prot_H-elongata_contig131111.2252.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig131111.2252.1
Unique Nameprot_H-elongata_contig131111.2252.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length54
Homology
BLAST of mRNA_H-elongata_contig131111.2252.1 vs. uniprot
Match: D8LIC3_ECTSI (Ribosomal RNA-processing protein 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC3_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.560e-18
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 0
Query:    1 MQGYLRGHGTYLEEGANGEPPRLVACVAGVVERVNKLISVRPIKSR 46
            +QGYLRGHGTY+EEG +G PP+L+ACVAGVVERVNKLISVRPIKSR
Sbjct:   18 VQGYLRGHGTYVEEGTDGGPPKLLACVAGVVERVNKLISVRPIKSR 63          
BLAST of mRNA_H-elongata_contig131111.2252.1 vs. uniprot
Match: A0A6H5KMR3_9PHAE (Ribosomal RNA-processing protein 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR3_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.220e-18
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 0
Query:    1 MQGYLRGHGTYLEEGANGEPPRLVACVAGVVERVNKLISVRPIKSR 46
            +QGYLRGHGTY+EEG +G PP+L+ACVAGVVERVNKLISVRPIKSR
Sbjct:   18 VQGYLRGHGTYVEEGTDGGPPKLLACVAGVVERVNKLISVRPIKSR 63          
BLAST of mRNA_H-elongata_contig131111.2252.1 vs. uniprot
Match: A0A836CMW4_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.350e-14
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 0
Query:    3 GYLRGHGTYLEEGANGEPPRLVACVAGVVERVNKLISVRPIKSR 46
            G+LRGHGTY++E  +G  P+L+ACVAGVVERVNKLISVRP+KSR
Sbjct:   16 GFLRGHGTYIQESEDGGEPQLIACVAGVVERVNKLISVRPVKSR 59          
BLAST of mRNA_H-elongata_contig131111.2252.1 vs. uniprot
Match: UPI000B8E21E9 (exosome complex component RRP4 isoform X2 n=1 Tax=Zootermopsis nevadensis TaxID=136037 RepID=UPI000B8E21E9)

HSP 1 Score: 59.7 bits (143), Expect = 3.880e-9
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0
Query:    1 MQGYLRGHGTYLEEGANGEPPRLVACVAGVVERVNKLISVRPIKSR 46
            M G++RGHGTY+EE A      L A VAGVVE+VNKLISVRPIK+R
Sbjct:   37 MSGFMRGHGTYMEEDA------LTASVAGVVEQVNKLISVRPIKNR 76          
BLAST of mRNA_H-elongata_contig131111.2252.1 vs. uniprot
Match: A0A067RDM3_ZOONE (Ribosomal RNA-processing protein 4 n=2 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067RDM3_ZOONE)

HSP 1 Score: 59.7 bits (143), Expect = 4.200e-9
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0
Query:    1 MQGYLRGHGTYLEEGANGEPPRLVACVAGVVERVNKLISVRPIKSR 46
            M G++RGHGTY+EE A      L A VAGVVE+VNKLISVRPIK+R
Sbjct:   37 MSGFMRGHGTYMEEDA------LTASVAGVVEQVNKLISVRPIKNR 76          
BLAST of mRNA_H-elongata_contig131111.2252.1 vs. uniprot
Match: F2U1Z1_SALR5 (Ribosomal RNA-processing protein 4 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U1Z1_SALR5)

HSP 1 Score: 58.5 bits (140), Expect = 1.070e-8
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 0
Query:    2 QGYLRGHGTYLEEGANGEPPRLVACVAGVVERVNKLISVRPIKSR 46
            QGY+RGHGT++ +G      RL+A VAGVVERVNK+ISVRP+++R
Sbjct:   47 QGYMRGHGTFIHDG------RLLASVAGVVERVNKVISVRPVRTR 85          
BLAST of mRNA_H-elongata_contig131111.2252.1 vs. uniprot
Match: A0A7S0Y5B4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y5B4_HEMAN)

HSP 1 Score: 55.8 bits (133), Expect = 2.700e-8
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 0
Query:    3 GYLRGHGTYLEEGANGEPPRLVACVAGVVERVNKLISVRPIKSR 46
            G+LRGHGTY+++G  GE   LVA VAGVV+RVNKL+SV P+KSR
Sbjct:   16 GFLRGHGTYVKDG--GET--LVASVAGVVQRVNKLVSVIPVKSR 55          
BLAST of mRNA_H-elongata_contig131111.2252.1 vs. uniprot
Match: UPI0006B10691 (exosome complex component RRP4-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B10691)

HSP 1 Score: 57.4 bits (137), Expect = 2.710e-8
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 0
Query:    3 GYLRGHGTYLEEGANGEPPRLVACVAGVVERVNKLISVRPIKSR 46
            G++RGHGTY+EE        LVA VAG+VERVNKL+SVRP+K+R
Sbjct:   36 GFMRGHGTYVEE------ENLVASVAGIVERVNKLVSVRPLKTR 73          
BLAST of mRNA_H-elongata_contig131111.2252.1 vs. uniprot
Match: A0A2J7RGE7_9NEOP (Ribosomal RNA-processing protein 4 n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RGE7_9NEOP)

HSP 1 Score: 57.4 bits (137), Expect = 2.760e-8
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 0
Query:    3 GYLRGHGTYLEEGANGEPPRLVACVAGVVERVNKLISVRPIKSR 46
            G++RGHGTY+EE A      L A VAGVVE+VNKLISVRPIK+R
Sbjct:   39 GFMRGHGTYMEEDA------LTASVAGVVEQVNKLISVRPIKNR 76          
BLAST of mRNA_H-elongata_contig131111.2252.1 vs. uniprot
Match: A0A7M7K2I4_VARDE (Ribosomal RNA-processing protein 4 n=1 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7K2I4_VARDE)

HSP 1 Score: 56.6 bits (135), Expect = 5.190e-8
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 0
Query:    3 GYLRGHGTYLEEGANGEPPRLVACVAGVVERVNKLISVRPIKSR 46
            GY+RGHGTYLEE +      L++ VAGVVE+VNKLI+VRP+K+R
Sbjct:   42 GYMRGHGTYLEEESG-----LLSAVAGVVEKVNKLITVRPLKTR 80          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131111.2252.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIC3_ECTSI1.560e-1884.78Ribosomal RNA-processing protein 4 n=1 Tax=Ectocar... [more]
A0A6H5KMR3_9PHAE2.220e-1884.78Ribosomal RNA-processing protein 4 n=1 Tax=Ectocar... [more]
A0A836CMW4_9STRA2.350e-1475.00Ribosomal RNA-processing protein 4 n=1 Tax=Tribone... [more]
UPI000B8E21E93.880e-967.39exosome complex component RRP4 isoform X2 n=1 Tax=... [more]
A0A067RDM3_ZOONE4.200e-967.39Ribosomal RNA-processing protein 4 n=2 Tax=Zooterm... [more]
F2U1Z1_SALR51.070e-862.22Ribosomal RNA-processing protein 4 n=1 Tax=Salping... [more]
A0A7S0Y5B4_HEMAN2.700e-868.18Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
UPI0006B106912.710e-863.64exosome complex component RRP4-like n=1 Tax=Limulu... [more]
A0A2J7RGE7_9NEOP2.760e-868.18Ribosomal RNA-processing protein 4 n=1 Tax=Cryptot... [more]
A0A7M7K2I4_VARDE5.190e-863.64Ribosomal RNA-processing protein 4 n=1 Tax=Varroa ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025721Exosome complex component, N-terminal domainPFAMPF14382ECR1_Ncoord: 2..34
e-value: 4.9E-8
score: 32.6
NoneNo IPR availableGENE3D2.40.50.100coord: 1..49
e-value: 4.2E-15
score: 57.1
NoneNo IPR availablePANTHERPTHR21321:SF4EXOSOME COMPLEX COMPONENT RRP4coord: 3..46
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 2..45
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 3..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131111contigH-elongata_contig131111:1500..1661 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131111.2252.1mRNA_H-elongata_contig131111.2252.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig131111 1491..1661 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig131111.2252.1 ID=prot_H-elongata_contig131111.2252.1|Name=mRNA_H-elongata_contig131111.2252.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MQGYLRGHGTYLEEGANGEPPRLVACVAGVVERVNKLISVRPIKSRRAAL
VFL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025721Exosome_cplx_N_dom
IPR026699Exosome_RNA_bind1/RRP40/RRP4