mRNA_H-elongata_contig131064.2247.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131064.2247.1
Unique NamemRNA_H-elongata_contig131064.2247.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131064.2247.1 vs. uniprot
Match: D7FYH7_ECTSI (Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYH7_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 9.830e-26
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 VKCVVHWFQMMYSGRLSMFADSPAAQYIPVTYDVRRISCPVAIVYGGRDYLGEI 162
            VKCV+HWFQMMYSGRLSMFAD PA+QY+PVTYDV R+SCPVAIVYGGRD+L E+
Sbjct:  276 VKCVLHWFQMMYSGRLSMFADGPASQYVPVTYDVARVSCPVAIVYGGRDHLVEV 329
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BLAST of mRNA_H-elongata_contig131064.2247.1 vs. uniprot
Match: A0A8H7Q8B6_9FUNG (AB hydrolase-1 domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7Q8B6_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 1.830e-6
Identity = 24/61 (39.34%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    1 VKCVVHWFQMMYSGRLSMFADSP----------AAQYIPVTYDVRRISCPVAIVYGGRDYL 153
            VKC+VHWFQ++ +GR  M+ + P          A  +IP  +  ++I  P+AI YGG D L
Sbjct:  405 VKCLVHWFQIIRTGRFQMYDEIPNILPYRSEQGAMDHIPQRFPTKQIKTPIAIFYGGSDSL 465
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BLAST of mRNA_H-elongata_contig131064.2247.1 vs. uniprot
Match: A0A1S8WA19_9FUNG (AB hydrolase-1 domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8WA19_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 1.830e-6
Identity = 28/66 (42.42%), Postives = 36/66 (54.55%), Query Frame = 1 
Query:    1 VKCVVHWFQMMYSGRLSMFADSPAAQ------YIPVTYDVRRISCPVAIVYGGRDYLGEIFPYIYK 180
            VK VVHWFQ+M +GR  M+ D P         Y    Y   +I  P+AI+YGG D L ++  YI K
Sbjct:  377 VKIVVHWFQIMKTGRFQMYDDHPPMMPNAVEGYHVPRYPTSQIQTPIAIIYGGEDTLPDM-DYIIK 441
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BLAST of mRNA_H-elongata_contig131064.2247.1 vs. uniprot
Match: A0A177WK78_BATDL (Abhydro_lipase domain-containing protein n=3 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WK78_BATDL)

HSP 1 Score: 51.6 bits (122), Expect = 4.690e-6
Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    1 VKCVVHWFQMMYSGRLSMFADSPAAQ-------YIPVTYDVRRISCPVAIVYGGRDYLGEIFPYIYK 180
            VK VVHWFQ+M +GR  M+ D P          +IP  +   +I  P+AI+YGG+D L ++  YI K
Sbjct:  380 VKIVVHWFQIMKTGRFQMYDDLPPMMPNGVEGYHIP-RFPTSQIQTPIAIIYGGKDTLPDM-DYILK 444
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BLAST of mRNA_H-elongata_contig131064.2247.1 vs. uniprot
Match: A0A8H7S2B5_9FUNG (AB hydrolase-1 domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S2B5_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 1.200e-5
Identity = 23/61 (37.70%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    1 VKCVVHWFQMMYSGRLSMFADSPA----------AQYIPVTYDVRRISCPVAIVYGGRDYL 153
            VK +VHWFQ++ +GR  MF + P+          A ++P  +  ++I  P+AI YGG D L
Sbjct:  364 VKSLVHWFQIIRTGRFQMFDELPSRLPYHTANAVADHVPPRFTTKQIKTPIAIFYGGSDSL 424
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BLAST of mRNA_H-elongata_contig131064.2247.1 vs. uniprot
Match: A0A8H7EP20_9FUNG (Cholesterol esterase n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EP20_9FUNG)

HSP 1 Score: 49.7 bits (117), Expect = 2.200e-5
Identity = 23/61 (37.70%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    1 VKCVVHWFQMMYSGRLSMFADSPAA----------QYIPVTYDVRRISCPVAIVYGGRDYL 153
            VK +VHWFQ++ +GR  MF + P+            +IP  +  ++I+ P+AI YGG D L
Sbjct:  213 VKSLVHWFQIIRTGRFQMFDEMPSRLPYHAVNTVMDHIPPRFPTKQITTPIAIFYGGSDSL 273
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BLAST of mRNA_H-elongata_contig131064.2247.1 vs. uniprot
Match: A0A642VEK4_9ASCO (Abhydro_lipase domain-containing protein n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642VEK4_9ASCO)

HSP 1 Score: 48.9 bits (115), Expect = 4.180e-5
Identity = 28/61 (45.90%), Postives = 34/61 (55.74%), Query Frame = 1 
Query:    1 VKCVVHWFQMMYSGRLSMFADSPAA--QYIPVTYDV-----RRISCPVAIVYGGRDYLGEI 162
            VK VVHWFQ+M SGR  MF D   +   Y P TY V     + I  PV ++YG  D L +I
Sbjct:  335 VKSVVHWFQIMRSGRFHMFDDDVQSPLMYDPRTYRVAPFPTQNIMSPVVLIYGTSDSLVDI 395
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BLAST of mRNA_H-elongata_contig131064.2247.1 vs. uniprot
Match: A0A077X1J8_9FUNG (AB hydrolase-1 domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077X1J8_9FUNG)

HSP 1 Score: 48.5 bits (114), Expect = 5.730e-5
Identity = 22/61 (36.07%), Postives = 34/61 (55.74%), Query Frame = 1 
Query:    1 VKCVVHWFQMMYSGRLSMFADSPAA----------QYIPVTYDVRRISCPVAIVYGGRDYL 153
            VK +VHWFQ++ +GR  MF + P+            ++P  +  ++I  P+AI YGG D L
Sbjct:  364 VKSLVHWFQIIRTGRFQMFDELPSRLPYHTSNAVMDHVPPRFPTKQIKTPIAIFYGGSDSL 424
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BLAST of mRNA_H-elongata_contig131064.2247.1 vs. uniprot
Match: S2J1V7_MUCC1 (Lipase n=1 Tax=Mucor circinelloides f. circinelloides (strain 1006PhL) TaxID=1220926 RepID=S2J1V7_MUCC1)

HSP 1 Score: 48.1 bits (113), Expect = 7.800e-5
Identity = 21/61 (34.43%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    1 VKCVVHWFQMMYSGRLSMFADSPAA----------QYIPVTYDVRRISCPVAIVYGGRDYL 153
            VK +VHWFQ++ SGR  M+ ++P+            ++P  +  ++I+ P+AI YG  D L
Sbjct:  281 VKSIVHWFQIISSGRFQMYDETPSLLPWSTVNTVIDHLPPKFPTKQITTPIAIFYGSADTL 341
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BLAST of mRNA_H-elongata_contig131064.2247.1 vs. uniprot
Match: A0A8H7RKZ0_9FUNG (Abhydro_lipase domain-containing protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7RKZ0_9FUNG)

HSP 1 Score: 48.1 bits (113), Expect = 7.810e-5
Identity = 21/61 (34.43%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    1 VKCVVHWFQMMYSGRLSMFADSPAA----------QYIPVTYDVRRISCPVAIVYGGRDYL 153
            VK +VHWFQ++ SGR  M+ ++P+            ++P  +  ++I+ P+AI YG  D L
Sbjct:  308 VKSIVHWFQIISSGRFQMYDETPSLLPWSTVNTVIDHLPPKFPTKQIATPIAIFYGSADTL 368
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131064.2247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FYH7_ECTSI9.830e-2683.33Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A8H7Q8B6_9FUNG1.830e-639.34AB hydrolase-1 domain-containing protein n=1 Tax=U... [more]
A0A1S8WA19_9FUNG1.830e-642.42AB hydrolase-1 domain-containing protein n=1 Tax=B... [more]
A0A177WK78_BATDL4.690e-641.79Abhydro_lipase domain-containing protein n=3 Tax=B... [more]
A0A8H7S2B5_9FUNG1.200e-537.70AB hydrolase-1 domain-containing protein n=1 Tax=M... [more]
A0A8H7EP20_9FUNG2.200e-537.70Cholesterol esterase n=1 Tax=Apophysomyces ossifor... [more]
A0A642VEK4_9ASCO4.180e-545.90Abhydro_lipase domain-containing protein n=1 Tax=T... [more]
A0A077X1J8_9FUNG5.730e-536.07AB hydrolase-1 domain-containing protein n=1 Tax=L... [more]
S2J1V7_MUCC17.800e-534.43Lipase n=1 Tax=Mucor circinelloides f. circinelloi... [more]
A0A8H7RKZ0_9FUNG7.810e-534.43Abhydro_lipase domain-containing protein n=1 Tax=M... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131064contigH-elongata_contig131064:457..639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue4.7e-15
Seed eggNOG ortholog2880.D7FYH7
Preferred nameTGL1
KEGG rclassRC00055,RC00523
KEGG koko:K01052
KEGG ReactionR01462
KEGG Pathwayko00100,ko04142,ko04979,map00100,map04142,map04979
GOsGO:0003674,GO:0003824,GO:0004771,GO:0005575,GO:0005622,GO:0005623,GO:0005811,GO:0006066,GO:0006629,GO:0006694,GO:0006696,GO:0008150,GO:0008152,GO:0008202,GO:0008204,GO:0008610,GO:0009058,GO:0009987,GO:0016020,GO:0016021,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016298,GO:0016787,GO:0016788,GO:0031224,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044425,GO:0044464,GO:0046165,GO:0052689,GO:0071704,GO:0097384,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653
EggNOG free text desc.hydrolase activity, acting on ester bonds
EggNOG OGsCOG0596@1,KOG2624@2759
EC3.1.1.13
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size183
Cds size156
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.6211746-UTR-H-elongata_contig131064:456..4831622929778.6211746-UTR-H-elongata_contig131064:456..483Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131064 457..483 +
1691679154.2448785-UTR-H-elongata_contig131064:456..4831691679154.2448785-UTR-H-elongata_contig131064:456..483Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131064 457..483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.6353855-CDS-H-elongata_contig131064:483..6391622929778.6353855-CDS-H-elongata_contig131064:483..639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131064 484..639 +
1691679154.26401-CDS-H-elongata_contig131064:483..6391691679154.26401-CDS-H-elongata_contig131064:483..639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131064 484..639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131064.2247.1prot_H-elongata_contig131064.2247.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131064 484..639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131064.2247.1

>prot_H-elongata_contig131064.2247.1 ID=prot_H-elongata_contig131064.2247.1|Name=mRNA_H-elongata_contig131064.2247.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MMYSGRLSMFADSPAAQYIPVTYDVRRISCPVAIVYGGRDYLGEIFPYIY
K*
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mRNA from alignment at H-elongata_contig131064:457..639+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131064.2247.1 ID=mRNA_H-elongata_contig131064.2247.1|Name=mRNA_H-elongata_contig131064.2247.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig131064:457..639+ (Himanthalia elongata Himel1 dioecious)
GTCAAGTGCGTGGTGCACTGGTTCCAGATGATGTACTCTGGGCGTCTTTC
TATGTTCGCCGATTCCCCGGCCGCCCAGTACATTCCGGTCACCTACGACG
TCCGACGGATTTCTTGCCCGGTGGCCATCGTTTACGGAGGCAGAGATTAT
CTGGGTGAGATATTTCCATATATATATAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig131064:457..639+

>mRNA_H-elongata_contig131064.2247.1 ID=mRNA_H-elongata_contig131064.2247.1|Name=mRNA_H-elongata_contig131064.2247.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig131064:457..639+ (Himanthalia elongata Himel1 dioecious)
ATGATGTACTCTGGGCGTCTTTCTATGTTCGCCGATTCCCCGGCCGCCCA
GTACATTCCGGTCACCTACGACGTCCGACGGATTTCTTGCCCGGTGGCCA
TCGTTTACGGAGGCAGAGATTATCTGGGTGAGATATTTCCATATATATAT
AAATAAATGATGTACTCTGGGCGTCTTTCTATGTTCGCCGATTCCCCGGC
CGCCCAGTACATTCCGGTCACCTACGACGTCCGACGGATTTCTTGCCCGG
TGGCCATCGTTTACGGAGGCAGAGATTATCTGGGTGAGATATTTCCATAT
ATATATAAATAA
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