mRNA_H-elongata_contig131033.2244.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131033.2244.1
Unique NamemRNA_H-elongata_contig131033.2244.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131033.2244.1 vs. uniprot
Match: A0A1V9X0W5_9ACAR (Arf-GAP with coiled-coil n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9X0W5_9ACAR)

HSP 1 Score: 88.6 bits (218), Expect = 5.740e-19
Identity = 38/66 (57.58%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 GSRIAAMAAASAKRLLPRNERCVDCRARDPDWASISLGVMMCIECSGIHRSMGVHVSKVRARRVFS 198
            G+ +  + ++SA R +P NERCVDC ARDP+WAS++LG  +CI+CSGIHRS+GVH+SKVR+ ++ S
Sbjct:  260 GAHVKRLTSSSALRTVPGNERCVDCGARDPEWASVNLGATLCIQCSGIHRSLGVHISKVRSLKLDS 325
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BLAST of mRNA_H-elongata_contig131033.2244.1 vs. uniprot
Match: A0A812REU2_SYMMI (AGD3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812REU2_SYMMI)

HSP 1 Score: 79.7 bits (195), Expect = 7.990e-17
Identity = 32/48 (66.67%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   40 RLLPRNERCVDCRARDPDWASISLGVMMCIECSGIHRSMGVHVSKVRA 183
            R +P N+RCVDC A  PDWASI+LGV+MC++CSG+HRS+G H+SKVR+
Sbjct:   12 RRVPGNDRCVDCGAEAPDWASINLGVLMCLQCSGVHRSLGTHISKVRS 59
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BLAST of mRNA_H-elongata_contig131033.2244.1 vs. uniprot
Match: D7FVG0_ECTSI (Centaurin, beta 5, isoform CRA_a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG0_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 8.440e-17
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:   55 NERCVDCRARDPDWASISLGVMMCIECSGIHRSMGVHVSKVRA 183
            N  CVDC AR+PDW+SI+LGVMMCIECSGIHRSMGVHVSKVR+
Sbjct:  444 NPECVDCGAREPDWSSINLGVMMCIECSGIHRSMGVHVSKVRS 486
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BLAST of mRNA_H-elongata_contig131033.2244.1 vs. uniprot
Match: A0A0D2U686_CAPO3 (Development and differentiation enhancing factor 2 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U686_CAPO3)

HSP 1 Score: 82.4 bits (202), Expect = 8.500e-17
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   40 RLLPRNERCVDCRARDPDWASISLGVMMCIECSGIHRSMGVHVSKVRA 183
            R LP N RCVDC A DP+WAS++LG+MMCI+CSG+HR +GVH+SKVR+
Sbjct:  434 RALPGNNRCVDCDAADPEWASLNLGIMMCIDCSGVHRELGVHISKVRS 481
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BLAST of mRNA_H-elongata_contig131033.2244.1 vs. uniprot
Match: A0A6H5L2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J8_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.510e-17
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:   55 NERCVDCRARDPDWASISLGVMMCIECSGIHRSMGVHVSKVRA 183
            N  CVDC AR+PDW+SI+LGVMMCIECSGIHRSMGVHVSKVR+
Sbjct:  704 NPECVDCGAREPDWSSINLGVMMCIECSGIHRSMGVHVSKVRS 746
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BLAST of mRNA_H-elongata_contig131033.2244.1 vs. uniprot
Match: A0A1E7FKS9_9STRA (Arf GTPase activating protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKS9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.210e-16
Identity = 30/48 (62.50%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   55 NERCVDCRARDPDWASISLGVMMCIECSGIHRSMGVHVSKVRARRVFS 198
            N  CVDC A +PDW S++LG++MCI+CSG+HRS+GVHVSKVR+ ++ S
Sbjct:    4 NSTCVDCGAPNPDWVSLNLGILMCIDCSGVHRSLGVHVSKVRSLKLDS 51
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BLAST of mRNA_H-elongata_contig131033.2244.1 vs. uniprot
Match: A0A8H7UGP7_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UGP7_9FUNG)

HSP 1 Score: 81.6 bits (200), Expect = 1.580e-16
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   40 RLLPRNERCVDCRARDPDWASISLGVMMCIECSGIHRSMGVHVSKVRA 183
            R +P N  C DCRA DPDWASI+LG ++CIECSGIHRS+GVHVSKVR+
Sbjct:  455 RSMPGNNFCADCRAADPDWASINLGTLLCIECSGIHRSLGVHVSKVRS 502
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BLAST of mRNA_H-elongata_contig131033.2244.1 vs. uniprot
Match: A0A835ZCL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.590e-16
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   40 RLLPRNERCVDCRARDPDWASISLGVMMCIECSGIHRSMGVHVSKVRA 183
            RL   N +CVDC A  PDWASISLGV+MCIECSGIHRSMGVH+SKVR+
Sbjct:  929 RLSKANPQCVDCGAATPDWASISLGVLMCIECSGIHRSMGVHISKVRS 976
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BLAST of mRNA_H-elongata_contig131033.2244.1 vs. uniprot
Match: A0A5D2GH80_GOSDA (Arf-GAP domain-containing protein n=1 Tax=Gossypium darwinii TaxID=34276 RepID=A0A5D2GH80_GOSDA)

HSP 1 Score: 75.9 bits (185), Expect = 1.760e-16
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   46 LPRNERCVDCRARDPDWASISLGVMMCIECSGIHRSMGVHVSKVRA 183
            LP N  C DC+++ P WAS+SLG+ +CI+CSGIHRS+GVH+SKVR+
Sbjct:   25 LPENRECADCKSKGPRWASVSLGIFICIQCSGIHRSLGVHISKVRS 70
[Close]
BLAST of mRNA_H-elongata_contig131033.2244.1 vs. uniprot
Match: A0A067JFB9_JATCU (Uncharacterized protein n=2 Tax=Jatropha curcas TaxID=180498 RepID=A0A067JFB9_JATCU)

HSP 1 Score: 81.3 bits (199), Expect = 2.160e-16
Identity = 33/48 (68.75%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:   40 RLLPRNERCVDCRARDPDWASISLGVMMCIECSGIHRSMGVHVSKVRA 183
            R +P N++CVDC A +PDWAS++LGV+MCIECSG+HR++GVHVSKVR+
Sbjct:  500 RRVPGNDKCVDCGAPEPDWASLNLGVLMCIECSGVHRNLGVHVSKVRS 547
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131033.2244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V9X0W5_9ACAR5.740e-1957.58Arf-GAP with coiled-coil n=1 Tax=Tropilaelaps merc... [more]
A0A812REU2_SYMMI7.990e-1766.67AGD3 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
D7FVG0_ECTSI8.440e-1783.72Centaurin, beta 5, isoform CRA_a n=1 Tax=Ectocarpu... [more]
A0A0D2U686_CAPO38.500e-1768.75Development and differentiation enhancing factor 2... [more]
A0A6H5L2J8_9PHAE8.510e-1783.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1E7FKS9_9STRA1.210e-1662.50Arf GTPase activating protein (Fragment) n=1 Tax=F... [more]
A0A8H7UGP7_9FUNG1.580e-1672.92Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A835ZCL2_9STRA1.590e-1677.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D2GH80_GOSDA1.760e-1663.04Arf-GAP domain-containing protein n=1 Tax=Gossypiu... [more]
A0A067JFB9_JATCU2.160e-1668.75Uncharacterized protein n=2 Tax=Jatropha curcas Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131033contigH-elongata_contig131033:953..1799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score82.0
Seed ortholog evalue1e-13
Seed eggNOG ortholog192875.XP_004364787.1
Preferred nameASAP1
KEGG koko:K12488
KEGG Pathwayko04144,ko04666,map04144,map04666
GOsGO:0000139,GO:0000278,GO:0000281,GO:0000910,GO:0001654,GO:0001726,GO:0001745,GO:0001786,GO:0002102,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005794,GO:0005795,GO:0005802,GO:0005829,GO:0005856,GO:0005886,GO:0005912,GO:0005924,GO:0005925,GO:0006810,GO:0006888,GO:0006891,GO:0006928,GO:0006996,GO:0007049,GO:0007275,GO:0007399,GO:0007423,GO:0008047,GO:0008150,GO:0008289,GO:0009653,GO:0009887,GO:0009987,GO:0010324,GO:0010638,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0016477,GO:0017124,GO:0019904,GO:0022008,GO:0022402,GO:0022607,GO:0030030,GO:0030031,GO:0030054,GO:0030055,GO:0030154,GO:0030234,GO:0030425,GO:0030695,GO:0031090,GO:0031252,GO:0031253,GO:0031334,GO:0031344,GO:0031345,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0031985,GO:0032231,GO:0032266,GO:0032501,GO:0032502,GO:0032506,GO:0032580,GO:0032879,GO:0032880,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0035091,GO:0036090,GO:0036477,GO:0040011,GO:0042995,GO:0043005,GO:0043085,GO:0043087,GO:0043167,GO:0043168,GO:0043197,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043547,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044309,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0045177,GO:0045202,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046907,GO:0048193,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048592,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050773,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051093,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051301,GO:0051336,GO:0051345,GO:0051492,GO:0051493,GO:0051641,GO:0051649,GO:0051674,GO:0051960,GO:0051961,GO:0060271,GO:0060284,GO:0060341,GO:0060589,GO:0060998,GO:0061000,GO:0061024,GO:0061640,GO:0065007,GO:0065009,GO:0070013,GO:0070161,GO:0070925,GO:0071801,GO:0071803,GO:0071840,GO:0071944,GO:0072341,GO:0090596,GO:0097447,GO:0097458,GO:0097708,GO:0098588,GO:0098590,GO:0098772,GO:0098791,GO:0098794,GO:0099024,GO:0110020,GO:0110053,GO:0120025,GO:0120031,GO:0120035,GO:0120036,GO:0120038,GO:1901981,GO:1902115,GO:1902117,GO:1902410,GO:1902903,GO:1902936,GO:1903047,GO:1903358,GO:1903525,GO:1903527,GO:1903729,GO:1903827,GO:1903829,GO:1990386,GO:2000026,GO:2000171
EggNOG free text desc.Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein
EggNOG OGs38B5T@33154,COG5347@1,KOG0521@2759
COG Functional cat.T
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131033.2244.1prot_H-elongata_contig131033.2244.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131033 971..1799 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.4309793-UTR-H-elongata_contig131033:952..9701622929778.4309793-UTR-H-elongata_contig131033:952..970Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131033 953..970 +
1691679154.1980093-UTR-H-elongata_contig131033:952..9701691679154.1980093-UTR-H-elongata_contig131033:952..970Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131033 953..970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.4422102-CDS-H-elongata_contig131033:970..10151622929778.4422102-CDS-H-elongata_contig131033:970..1015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131033 971..1015 +
1691679154.207763-CDS-H-elongata_contig131033:970..10151691679154.207763-CDS-H-elongata_contig131033:970..1015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131033 971..1015 +
1622929778.459823-CDS-H-elongata_contig131033:1661..17991622929778.459823-CDS-H-elongata_contig131033:1661..1799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131033 1662..1799 +
1691679154.2183945-CDS-H-elongata_contig131033:1661..17991691679154.2183945-CDS-H-elongata_contig131033:1661..1799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131033 1662..1799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131033.2244.1

>prot_H-elongata_contig131033.2244.1 ID=prot_H-elongata_contig131033.2244.1|Name=mRNA_H-elongata_contig131033.2244.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MAAASAKRLLPRNERCVDCRARDPDWASISLGVMMCIECSGIHRSMGVHV
SKVRARRVFS*
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mRNA from alignment at H-elongata_contig131033:953..1799+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131033.2244.1 ID=mRNA_H-elongata_contig131033.2244.1|Name=mRNA_H-elongata_contig131033.2244.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=847bp|location=Sequence derived from alignment at H-elongata_contig131033:953..1799+ (Himanthalia elongata Himel1 dioecious)
GGAAGCAGAATTGCCGCGATGGCGGCAGCTTCTGCAAAACGCCTCCTCCC
TAGAAATGAGCGAGTGATTCGTGTTTTGACGTGGTGATCATGATGCTGTA
GCGCGATCGACCGCCGCGTGTCTCGCCTCGAGAACGGACAGACGGACGAA
TTTTTATGTCTCCGTTCTTATCTATTCCAGATATAAAGAATCGAGTTGGT
TTAGAGAGAGCCCGAAAGGCATTGGTTTGATGTTTTTGCGTGATTAAGCT
TCATGCACTTTTTCGAGCTTCAATTTTCGACTTCACGGTCGGCGAGGTAA
AAAGGCTTACTGAATCCTTCCCGTGATCAAATAAGTCTTTTAAATAAAAA
TATGTATTAAGGCAAGCACGGCAGATGGAAGGTAAGGTGGATAAATCCTG
TGTGACCCCCCGGCTGGTGCGTCCACAAGTTTGGCGTCCATAATTAAATG
GGATGACATTATATTATATTAAATTAAATGTTAGACGCGATGTCATTTGT
TGTTGTTTATGGAAACCGGGCGCGAAAACGTGTAACTCAAAAGTTTTTTC
CCTCTCGCGATAGATTCAAATTGGCGAAAGCCTCGTTTAATTACGTGGAC
GTTGTCCTCTAAGTTTATTCGCGTTTTCGTCTCTTTTTTTTTCTTCTCTC
TCTCTCTCTCTCTTTGTCACTTCTCTCGTTTTTGCTTTTTCATTCAGGCA
AATCCCGAGTGCGTTGACTGCCGTGCTAGAGATCCGGACTGGGCGAGCAT
TAGCCTGGGGGTTATGATGTGCATAGAGTGTTCTGGGATACACCGTTCCA
TGGGAGTGCATGTCTCAAAGGTGAGAGCGCGAAGGGTTTTTTCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig131033:953..1799+

>mRNA_H-elongata_contig131033.2244.1 ID=mRNA_H-elongata_contig131033.2244.1|Name=mRNA_H-elongata_contig131033.2244.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig131033:953..1799+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGCAGCTTCTGCAAAACGCCTCCTCCCTAGAAATGAGCGAATGGC
GGCAGCTTCTGCAAAACGCCTCCTCCCTAGAAATGAGCGATGCGTTGACT
GCCGTGCTAGAGATCCGGACTGGGCGAGCATTAGCCTGGGGGTTATGATG
TGCATAGAGTGTTCTGGGATACACCGTTCCATGGGAGTGCATGTCTCAAA
GGTGAGAGCGCGAAGGGTTTTTTCATGATGCGTTGACTGCCGTGCTAGAG
ATCCGGACTGGGCGAGCATTAGCCTGGGGGTTATGATGTGCATAGAGTGT
TCTGGGATACACCGTTCCATGGGAGTGCATGTCTCAAAGGTGAGAGCGCG
AAGGGTTTTTTCATGA
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