mRNA_H-elongata_contig131025.2242.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131025.2242.1
Unique NamemRNA_H-elongata_contig131025.2242.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131025.2242.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.170e-18
Identity = 47/105 (44.76%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:    1 FKLKDMGDARCYMGCHITRSRKARELKIDQHLYVESMVETFDVKKGSKIPATSGVPTLSKADEPRNPEEKEEMRKFPYQEAVGALMWTATMTRPDMASAVRAVAR 315
            F  K++G+ + + GC I R  +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E EE  ++P +EA+G++MW +T +RPD++ AVRAVAR
Sbjct:  101 FPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 198
[Close]
BLAST of mRNA_H-elongata_contig131025.2242.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.640e-18
Identity = 47/105 (44.76%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:    1 FKLKDMGDARCYMGCHITRSRKARELKIDQHLYVESMVETFDVKKGSKIPATSGVPTLSKADEPRNPEEKEEMRKFPYQEAVGALMWTATMTRPDMASAVRAVAR 315
            F  K++G+ + + GC I R  +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E EE  ++P +EA+G++MW +T +RPD++ AVRAVAR
Sbjct:   37 FPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 134
[Close]
BLAST of mRNA_H-elongata_contig131025.2242.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.590e-17
Identity = 47/105 (44.76%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:    1 FKLKDMGDARCYMGCHITRSRKARELKIDQHLYVESMVETFDVKKGSKIPATSGVPTLSKADEPRNPEEKEEMRKFPYQEAVGALMWTATMTRPDMASAVRAVAR 315
            F  K++G+ + + GC I R  +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E EE  ++P +EA+G++MW +T +RPD++ AVRAVAR
Sbjct:  244 FPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 341
[Close]
BLAST of mRNA_H-elongata_contig131025.2242.1 vs. uniprot
Match: A0A6H5K1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T2_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.770e-17
Identity = 47/105 (44.76%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:    1 FKLKDMGDARCYMGCHITRSRKARELKIDQHLYVESMVETFDVKKGSKIPATSGVPTLSKADEPRNPEEKEEMRKFPYQEAVGALMWTATMTRPDMASAVRAVAR 315
            F  K++G+ + + GC I R  +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E EE  ++P +EA+G++MW +T +RPD++ AVRAVAR
Sbjct:  497 FPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 594
[Close]
BLAST of mRNA_H-elongata_contig131025.2242.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.840e-17
Identity = 47/105 (44.76%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:    1 FKLKDMGDARCYMGCHITRSRKARELKIDQHLYVESMVETFDVKKGSKIPATSGVPTLSKADEPRNPEEKEEMRKFPYQEAVGALMWTATMTRPDMASAVRAVAR 315
            F  K++G+ + + GC I R  +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E EE  ++P +EA+G++MW +T +RPD++ AVRAVAR
Sbjct:  957 FPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 1054
[Close]
BLAST of mRNA_H-elongata_contig131025.2242.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.860e-17
Identity = 47/105 (44.76%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:    1 FKLKDMGDARCYMGCHITRSRKARELKIDQHLYVESMVETFDVKKGSKIPATSGVPTLSKADEPRNPEEKEEMRKFPYQEAVGALMWTATMTRPDMASAVRAVAR 315
            F  K++G+ + + GC I R  +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E EE  ++P +EA+G++MW +T +RPD++ AVRAVAR
Sbjct: 1336 FPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 1433
[Close]
BLAST of mRNA_H-elongata_contig131025.2242.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.860e-17
Identity = 47/105 (44.76%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:    1 FKLKDMGDARCYMGCHITRSRKARELKIDQHLYVESMVETFDVKKGSKIPATSGVPTLSKADEPRNPEEKEEMRKFPYQEAVGALMWTATMTRPDMASAVRAVAR 315
            F  K++G+ + + GC I R  +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E EE  ++P +EA+G++MW +T +RPD++ AVRAVAR
Sbjct: 1356 FPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 1453
[Close]
BLAST of mRNA_H-elongata_contig131025.2242.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.860e-17
Identity = 47/105 (44.76%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:    1 FKLKDMGDARCYMGCHITRSRKARELKIDQHLYVESMVETFDVKKGSKIPATSGVPTLSKADEPRNPEEKEEMRKFPYQEAVGALMWTATMTRPDMASAVRAVAR 315
            F  K++G+ + + GC I R  +A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E EE  ++P +EA+G++MW +T +RPD++ AVRAVAR
Sbjct: 1499 FPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 1596
[Close]
BLAST of mRNA_H-elongata_contig131025.2242.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.320e-17
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:    1 FKLKDMGDARCYMGCHITRSRKARELKIDQHLYVESMVETFDVKKGSKIPATSGVPTLSKADEPRNPEEKEEMRKFPYQEAVGALMWTATMTRPDMASAVRAVAR 315
            F  K++G+ + + GC I R   A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E EE  ++P +EA+G++MW +T +RPD++ AVRAVAR
Sbjct:  592 FPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 689
[Close]
BLAST of mRNA_H-elongata_contig131025.2242.1 vs. uniprot
Match: A0A6H5JLP8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP8_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.360e-17
Identity = 47/105 (44.76%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:    1 FKLKDMGDARCYMGCHITRSRKARELKIDQHLYVESMVETFDVKKGSKIPATSGVPTLSKADEPRNPEEKEEMRKFPYQEAVGALMWTATMTRPDMASAVRAVAR 315
            F  K++G+ + + GC I R   A  L+I Q  Y++SMVE FDVK  S+IPAT G     K        E EE  ++P  EA+G++MW +T +RPD++ AVRAVAR
Sbjct:  536 FPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPMGEAIGSMMWVSTFSRPDVSFAVRAVAR 633
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131025.2242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRS6_9PHAE1.170e-1844.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPT0_9PHAE2.640e-1844.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE1.590e-1744.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1T2_9PHAE1.770e-1744.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE1.840e-1744.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.860e-1744.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.860e-1744.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.860e-1744.76Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5K164_9PHAE3.320e-1744.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLP8_9PHAE8.360e-1744.76Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131025contigH-elongata_contig131025:102..419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score71.6
Seed ortholog evalue2.3e-10
Seed eggNOG ortholog4081.Solyc11g051150.1.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.2077136-UTR-H-elongata_contig131025:101..1161622929778.2077136-UTR-H-elongata_contig131025:101..116Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131025 102..116 +
1691679154.0808852-UTR-H-elongata_contig131025:101..1161691679154.0808852-UTR-H-elongata_contig131025:101..116Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131025 102..116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.219937-CDS-H-elongata_contig131025:116..4191622929778.219937-CDS-H-elongata_contig131025:116..419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131025 117..419 +
1691679154.0899935-CDS-H-elongata_contig131025:116..4191691679154.0899935-CDS-H-elongata_contig131025:116..419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131025 117..419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131025.2242.1prot_H-elongata_contig131025.2242.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131025 117..419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131025.2242.1

>prot_H-elongata_contig131025.2242.1 ID=prot_H-elongata_contig131025.2242.1|Name=mRNA_H-elongata_contig131025.2242.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MGDARCYMGCHITRSRKARELKIDQHLYVESMVETFDVKKGSKIPATSGV
PTLSKADEPRNPEEKEEMRKFPYQEAVGALMWTATMTRPDMASAVRAVAR
F
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mRNA from alignment at H-elongata_contig131025:102..419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131025.2242.1 ID=mRNA_H-elongata_contig131025.2242.1|Name=mRNA_H-elongata_contig131025.2242.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig131025:102..419+ (Himanthalia elongata Himel1 dioecious)
TTCAAATTGAAGGACATGGGTGACGCCAGGTGCTACATGGGTTGCCATAT
TACTAGGAGCCGCAAGGCGCGCGAGCTGAAGATCGACCAACACTTGTACG
TAGAGTCAATGGTGGAAACGTTCGACGTCAAGAAGGGAAGCAAGATACCG
GCTACGTCGGGGGTGCCAACACTCTCAAAGGCGGACGAGCCGCGGAACCC
GGAGGAGAAGGAGGAAATGAGGAAGTTTCCATACCAGGAAGCAGTGGGGG
CGCTTATGTGGACGGCGACGATGACACGGCCGGACATGGCGAGCGCAGTA
CGCGCTGTGGCCAGGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig131025:102..419+

>mRNA_H-elongata_contig131025.2242.1 ID=mRNA_H-elongata_contig131025.2242.1|Name=mRNA_H-elongata_contig131025.2242.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig131025:102..419+ (Himanthalia elongata Himel1 dioecious)
ATGGGTGACGCCAGGTGCTACATGGGTTGCCATATTACTAGGAGCCGCAA
GGCGCGCGAGCTGAAGATCGACCAACACTTGTACGTAGAGTCAATGGTGG
AAACGTTCGACGTCAAGAAGGGAAGCAAGATACCGGCTACGTCGGGGGTG
CCAACACTCTCAAAGGCGGACGAGCCGCGGAACCCGGAGGAGAAGGAGGA
AATGAGGAAGTTTCCATACCAGGAAGCAGTGGGGGCGCTTATGTGGACGG
CGACGATGACACGGCCGGACATGGCGAGCGCAGTACGCGCTGTGGCCAGG
TTCATGGGTGACGCCAGGTGCTACATGGGTTGCCATATTACTAGGAGCCG
CAAGGCGCGCGAGCTGAAGATCGACCAACACTTGTACGTAGAGTCAATGG
TGGAAACGTTCGACGTCAAGAAGGGAAGCAAGATACCGGCTACGTCGGGG
GTGCCAACACTCTCAAAGGCGGACGAGCCGCGGAACCCGGAGGAGAAGGA
GGAAATGAGGAAGTTTCCATACCAGGAAGCAGTGGGGGCGCTTATGTGGA
CGGCGACGATGACACGGCCGGACATGGCGAGCGCAGTACGCGCTGTGGCC
AGGTTC
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