mRNA_H-elongata_contig130993.2240.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130993.2240.1
Unique NamemRNA_H-elongata_contig130993.2240.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig130993.2240.1 vs. uniprot
Match: D7G5X2_ECTSI (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5X2_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 7.780e-15
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 ELYSLDDASFARVQPVYGLVFLFKWTGERDDRTTAEASSQPSLFFARQV 147
            ELYSLD+++F  ++PVYGLVFLFKWTG+ D+R T E+  +P LFFARQV
Sbjct:   17 ELYSLDESNFKDIRPVYGLVFLFKWTGD-DERHTTESQDEPGLFFARQV 64
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BLAST of mRNA_H-elongata_contig130993.2240.1 vs. uniprot
Match: A0A6H5KR90_9PHAE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR90_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 7.350e-14
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 ELYSLDDASFARVQPVYGLVFLFKWTGERDDRTTAEASSQPSLFFARQV 147
            ELYSLD+++F  V+PVYGLVFLFKWTG+ D+R T E  ++P LFFARQV
Sbjct:    4 ELYSLDESNFKDVRPVYGLVFLFKWTGD-DERHTTEPQNEPGLFFARQV 51
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BLAST of mRNA_H-elongata_contig130993.2240.1 vs. uniprot
Match: A0A8J2SRA1_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRA1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.500e-13
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 ELYSLDDASFARVQPVYGLVFLFKWTGERDDRTTAEASSQPSLFFARQV 147
            ELYSLDDA  A++QPV+GL+FLFKWTGE+DDR   +    P LFFA+QV
Sbjct:   29 ELYSLDDAELAQLQPVFGLIFLFKWTGEKDDRPCCD--EVPGLFFAKQV 75
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BLAST of mRNA_H-elongata_contig130993.2240.1 vs. uniprot
Match: A0A7S1XK40_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XK40_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.080e-12
Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 ELYSLDDASFARVQ-PVYGLVFLFKWTGERDDRTTAEASSQPSLFFARQV 147
            ELYSLD  SF R++ PVYGLVFLFKW  E DDR T      P LFFA+QV
Sbjct:   31 ELYSLDPDSFERLEKPVYGLVFLFKWQREADDRPTVADGEVPGLFFAKQV 80
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BLAST of mRNA_H-elongata_contig130993.2240.1 vs. uniprot
Match: F0YGW3_AURAN (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGW3_AURAN)

HSP 1 Score: 67.4 bits (163), Expect = 5.410e-12
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 ELYSLDDASFARVQPVYGLVFLFKWTGERDDRTTAEAS-SQPSLFFARQV 147
            ELYSLDD   AR  PV+GL+FLFKWTGE+DDR T     + P LF+A+Q+
Sbjct:   29 ELYSLDDGELARHAPVFGLIFLFKWTGEKDDRATLSFDEAPPGLFYAKQM 78
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BLAST of mRNA_H-elongata_contig130993.2240.1 vs. uniprot
Match: A0A835YVG3_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVG3_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 6.140e-11
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 ELYSLDDASFARVQPVYGLVFLFKWTGERDDRTTAEASSQPSLFFARQV 147
            ELYSLD+ SFA +  +YGL+FLFKW  E D+R T +A + P LFF+ QV
Sbjct:   31 ELYSLDEGSFADLGDIYGLIFLFKWRKETDNRPTLDAMNLPDLFFSHQV 79
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BLAST of mRNA_H-elongata_contig130993.2240.1 vs. uniprot
Match: A0A485K8S6_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K8S6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.780e-10
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 ELYSLDDASFARVQPVYGLVFLFKWTGERDDRTTAEASSQ---PSLFFARQV 147
            ELYSLDDASF ++ P++GL+FLFKWT       T+ AS+    P LFFA+QV
Sbjct:   29 ELYSLDDASFQQIAPIFGLIFLFKWTPGHAPAPTSSASAHQISPDLFFAKQV 80
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BLAST of mRNA_H-elongata_contig130993.2240.1 vs. uniprot
Match: A0A6G0WB30_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WB30_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.180e-10
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 ELYSLDDASFARVQPVYGLVFLFKWT-GERDDRTTAEASSQPSLFFARQV 147
            ELYSLD+ASF ++ PV+GL+FLFKWT G     TT+     P LFFA+QV
Sbjct:   29 ELYSLDEASFQQIAPVFGLIFLFKWTPGHAPAPTTSTHVVSPDLFFAKQV 78
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BLAST of mRNA_H-elongata_contig130993.2240.1 vs. uniprot
Match: A0A446WT88_TRITD (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446WT88_TRITD)

HSP 1 Score: 60.1 bits (144), Expect = 2.480e-9
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 ELYSLDDASFARVQPVYGLVFLFKWTGERDDRTTAEASSQPSLFFARQV 147
            ELYSLD  S +++QPVYGL+FLFKW    +D     +   P+LFFARQV
Sbjct:   29 ELYSLDVDSLSQLQPVYGLIFLFKWMPGGNDERPVVSDPNPNLFFARQV 77
[Close]
BLAST of mRNA_H-elongata_contig130993.2240.1 vs. uniprot
Match: A0A453Q453_AEGTS (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453Q453_AEGTS)

HSP 1 Score: 60.1 bits (144), Expect = 2.690e-9
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 ELYSLDDASFARVQPVYGLVFLFKWTGERDDRTTAEASSQPSLFFARQV 147
            ELYSLD  S +++QPVYGL+FLFKW    +D     +   P+LFFARQV
Sbjct:   46 ELYSLDVDSLSQLQPVYGLIFLFKWMPGGNDERPVVSDPNPNLFFARQV 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130993.2240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5X2_ECTSI7.780e-1565.31Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR90_9PHAE7.350e-1467.35Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ecto... [more]
A0A8J2SRA1_9STRA1.500e-1365.31Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pela... [more]
A0A7S1XK40_9STRA3.080e-1264.00Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
F0YGW3_AURAN5.410e-1260.00Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aure... [more]
A0A835YVG3_9STRA6.140e-1157.14Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
A0A485K8S6_9STRA2.780e-1055.77Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Apha... [more]
A0A6G0WB30_9STRA7.180e-1058.00Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Apha... [more]
A0A446WT88_TRITD2.480e-955.10Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trit... [more]
A0A453Q453_AEGTS2.690e-955.10Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aegi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130993contigH-elongata_contig130993:1578..1727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue3e-11
Seed eggNOG ortholog2880.D7G5X2
KEGG koko:K05610
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0004843,GO:0004857,GO:0004866,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009653,GO:0009892,GO:0009894,GO:0009987,GO:0010016,GO:0010466,GO:0010605,GO:0010951,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0030162,GO:0030234,GO:0030414,GO:0031011,GO:0031323,GO:0031324,GO:0031329,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0033202,GO:0036211,GO:0036459,GO:0042176,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045861,GO:0048367,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0052547,GO:0052548,GO:0060255,GO:0061134,GO:0061135,GO:0061136,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070603,GO:0070628,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0097346,GO:0098772,GO:0101005,GO:0140096,GO:1901564,GO:1902494,GO:1903050,GO:1903362,GO:1904949
EggNOG free text desc.monoubiquitinated histone deubiquitination
EggNOG OGsKOG2778@1,KOG2778@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionUbiquitin C-terminal hydrolase
Ec32 orthologEc-13_001980.1
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.1028116-CDS-H-elongata_contig130993:1577..17271622929778.1028116-CDS-H-elongata_contig130993:1577..1727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130993 1578..1727 +
1691679154.0398092-CDS-H-elongata_contig130993:1577..17271691679154.0398092-CDS-H-elongata_contig130993:1577..1727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130993 1578..1727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130993.2240.1prot_H-elongata_contig130993.2240.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130993 1578..1727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130993.2240.1

>prot_H-elongata_contig130993.2240.1 ID=prot_H-elongata_contig130993.2240.1|Name=mRNA_H-elongata_contig130993.2240.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
ELYSLDDASFARVQPVYGLVFLFKWTGERDDRTTAEASSQPSLFFARQV*
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mRNA from alignment at H-elongata_contig130993:1578..1727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130993.2240.1 ID=mRNA_H-elongata_contig130993.2240.1|Name=mRNA_H-elongata_contig130993.2240.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig130993:1578..1727+ (Himanthalia elongata Himel1 dioecious)
GAGCTCTACAGTCTGGATGACGCCAGCTTCGCCCGAGTGCAGCCCGTCTA
CGGCCTGGTGTTCCTCTTCAAATGGACAGGAGAGAGGGATGATCGCACAA
CCGCCGAAGCGAGCAGTCAACCCAGCCTTTTTTTCGCACGTCAGGTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig130993:1578..1727+

>mRNA_H-elongata_contig130993.2240.1 ID=mRNA_H-elongata_contig130993.2240.1|Name=mRNA_H-elongata_contig130993.2240.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig130993:1578..1727+ (Himanthalia elongata Himel1 dioecious)
GAGCTCTACAGTCTGGATGACGCCAGCTTCGCCCGAGTGCAGCCCGTCTA
CGGCCTGGTGTTCCTCTTCAAATGGACAGGAGAGAGGGATGATCGCACAA
CCGCCGAAGCGAGCAGTCAACCCAGCCTTTTTTTCGCACGTCAGGTGTAA
GAGCTCTACAGTCTGGATGACGCCAGCTTCGCCCGAGTGCAGCCCGTCTA
CGGCCTGGTGTTCCTCTTCAAATGGACAGGAGAGAGGGATGATCGCACAA
CCGCCGAAGCGAGCAGTCAACCCAGCCTTTTTTTCGCACGTCAGGTGTAA
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