prot_H-elongata_contig130949.2239.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig130949.2239.1
Unique Nameprot_H-elongata_contig130949.2239.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length155
Homology
BLAST of mRNA_H-elongata_contig130949.2239.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 8.310e-28
Identity = 53/147 (36.05%), Postives = 89/147 (60.54%), Query Frame = 0
Query:    9 GTKLSAWVDVDYGTCPDTRRSVSGGAVMMADGAISWFLRVKKVTAAASSESEYVAVAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEDAIKMARNRFSSRRTRDVDIKHHIVCDAIEGGVVHVEYVRSGEQHAGILTKSVDVKTF 154
            G  +  +VD DY +    RRSVSGG VM   G ++WF R +K    +++E+EYVA+A+++ E+ FLRQV  FM P   +  I + EDN   I++A N  ++  ++ +D++HH + + +E   + + +V S  QH   LTK++  ++F
Sbjct:   12 GMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESF 158          
BLAST of mRNA_H-elongata_contig130949.2239.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.650e-27
Identity = 54/147 (36.73%), Postives = 91/147 (61.90%), Query Frame = 0
Query:    9 GTKLSAWVDVDYGTCPDTRRSVSGGAVMMADGAISWFLRVKKVTAAASSESEYVAVAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEDAIKMARNRFSSRRTRDVDIKHHIVCDAIEGGVVHVEYVRSGEQHAGILTKSVDVKTF 154
            G  +  +VD DY +    RRSVSGG VM   G ++WF R +K    +++E+EYVA+A+++ E+ FLRQV  FM P   +  I + EDN+ AI++A N  ++  ++ +D++HH + + +E   + +  V +  QHA  LTK++  ++F
Sbjct:  164 GMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESF 310          
BLAST of mRNA_H-elongata_contig130949.2239.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 8.910e-27
Identity = 55/147 (37.41%), Postives = 92/147 (62.59%), Query Frame = 0
Query:    9 GTKLSAWVDVDYGTCPDTRRSVSGGAVMMADGAISWFLRVKKVTAAASSESEYVAVAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEDAIKMARNRFSSRRTRDVDIKHHIVCDAIEGGVVHVEYVRSGEQHAGILTKSVDVKTF 154
            G  +  +VD DY +    RRSVSGG VM   G ++WF R +K    +++E+EYVA+A+++ E+ FLRQV  FM P   +  I + EDN+ AI++A N  ++  ++ +D++HH + + +E   + + +V S  QHA  LTK++  ++F
Sbjct: 1315 GMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 1461          
BLAST of mRNA_H-elongata_contig130949.2239.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.110e-26
Identity = 53/147 (36.05%), Postives = 91/147 (61.90%), Query Frame = 0
Query:    9 GTKLSAWVDVDYGTCPDTRRSVSGGAVMMADGAISWFLRVKKVTAAASSESEYVAVAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEDAIKMARNRFSSRRTRDVDIKHHIVCDAIEGGVVHVEYVRSGEQHAGILTKSVDVKTF 154
            G  +  +VD DY +    RRSVSGG VM   G ++WF R +K    +++E+EYVA+A+++ E+ FLRQV  FM P   +  I + EDN+ AI++  N  ++  ++ +D++HH + + +E   + + +V +  QHA  LTK++  ++F
Sbjct:  219 GMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESF 365          
BLAST of mRNA_H-elongata_contig130949.2239.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.570e-26
Identity = 56/147 (38.10%), Postives = 91/147 (61.90%), Query Frame = 0
Query:    9 GTKLSAWVDVDYGTCPDTRRSVSGGAVMMADGAISWFLRVKKVTAAASSESEYVAVAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEDAIKMARNRFSSRRTRDVDIKHHIVCDAIEGGVVHVEYVRSGEQHAGILTKSVDVKTF 154
            G  +  +VD DY +    RRSVSGG VM   G ++WF R +K     ++ESEYVA+A+++ E+ FLRQV  FM P   +  I + EDN+ AI++A N  ++  ++ +D++HH + + +E   + + +V S  QHA  LTK++  ++F
Sbjct:  671 GMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLYTTESEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 817          
BLAST of mRNA_H-elongata_contig130949.2239.1 vs. uniprot
Match: A0A6H5KIL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.610e-26
Identity = 59/148 (39.86%), Postives = 94/148 (63.51%), Query Frame = 0
Query:    8 AGTKLSAWVDVDYGTCPDTRRSVSGGAVMMADGAISWFLRVKKVTAAASSESEYVAVAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEDAIKMARNRFSSRRTRDVDIKHHIVCDAIEGGVVHVEYVRSGEQHAGILTKSVDVKTF 154
            +G  L  +VD DY +    RRSVSGG VM A GAI+WF + +K    +++++EYVA+A+M  E+ FLRQV  FM P  +   I ++EDNE AI++A++  S+  ++ +D++HH +   ++   V + +V S  QHA  LTK++  + F
Sbjct:  907 SGFSLITFVDADYASVAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPVSNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPEREF 1054          
BLAST of mRNA_H-elongata_contig130949.2239.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.180e-26
Identity = 55/147 (37.41%), Postives = 90/147 (61.22%), Query Frame = 0
Query:    9 GTKLSAWVDVDYGTCPDTRRSVSGGAVMMADGAISWFLRVKKVTAAASSESEYVAVAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEDAIKMARNRFSSRRTRDVDIKHHIVCDAIEGGVVHVEYVRSGEQHAGILTKSVDVKTF 154
            G  +  +VD DY      RRSVSGG VM   G ++WF R +K    +++E+EYVA+A+++ E+ FLRQV  FM P   +  I + EDN+ AI++A N  ++  ++ +D +HH++   +E   + + +V S  QHA  LTK++  ++F
Sbjct:  136 GMSMQVFVDADYVRKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNSNSKHIDERHHLIRKLVERKEISITHVTSEFQHADFLTKAISKESF 282          
BLAST of mRNA_H-elongata_contig130949.2239.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.200e-26
Identity = 58/148 (39.19%), Postives = 94/148 (63.51%), Query Frame = 0
Query:    8 AGTKLSAWVDVDYGTCPDTRRSVSGGAVMMADGAISWFLRVKKVTAAASSESEYVAVAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEDAIKMARNRFSSRRTRDVDIKHHIVCDAIEGGVVHVEYVRSGEQHAGILTKSVDVKTF 154
            +G  L  +V+ DY +    RRSVSGG VM A GAI+WF + +K    +++++EYVA+A+M  E+ FLRQV  FM P  +   I ++EDNE AI++A++  S+  ++ +D++HH +   ++   V + +V S  QHA  LTK++  + F
Sbjct:  278 SGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPEREF 425          
BLAST of mRNA_H-elongata_contig130949.2239.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 3.370e-26
Identity = 57/148 (38.51%), Postives = 93/148 (62.84%), Query Frame = 0
Query:    8 AGTKLSAWVDVDYGTCPDTRRSVSGGAVMMADGAISWFLRVKKVTAAASSESEYVAVAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEDAIKMARNRFSSRRTRDVDIKHHIVCDAIEGGVVHVEYVRSGEQHAGILTKSVDVKTF 154
            +G  L  + D DY +    RRSVSGG VM A GAI+WF + +K    +++++EYVA+A+M  E+ FLR+V  FM P  +   I ++EDNE AI++A++  S+  ++ +D++HH +   ++   V + +V S  QHA  LTK++  + F
Sbjct:  226 SGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPERDF 373          
BLAST of mRNA_H-elongata_contig130949.2239.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.520e-26
Identity = 53/142 (37.32%), Postives = 89/142 (62.68%), Query Frame = 0
Query:    9 GTKLSAWVDVDYGTCPDTRRSVSGGAVMMADGAISWFLRVKKVTAAASSESEYVAVAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEDAIKMARNRFSSRRTRDVDIKHHIVCDAIEGGVVHVEYVRSGEQHAGILTKSV 149
            G  +  +VD DY +    RRSVSGG VM   G ++WF R +K    +++E+EYVA+A+++ E+ FLRQV  FM P   +  I + EDN+ AI++A N  ++  ++ +D++HH + + +E   + + +V +  QHA  LTK++
Sbjct:  281 GMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAI 422          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130949.2239.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTT9_9PHAE8.310e-2836.05Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE4.650e-2736.73Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHY5_9PHAE8.910e-2737.41Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L4G9_9PHAE1.110e-2636.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQN5_9PHAE1.570e-2638.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KIL0_9PHAE1.610e-2639.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K8K2_9PHAE2.180e-2637.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRZ9_9PHAE3.200e-2639.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWK8_9PHAE3.370e-2638.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE4.520e-2637.32Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 9..126
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 9..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130949contigH-elongata_contig130949:1346..1810 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130949.2239.1mRNA_H-elongata_contig130949.2239.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig130949 1346..1810 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig130949.2239.1 ID=prot_H-elongata_contig130949.2239.1|Name=mRNA_H-elongata_contig130949.2239.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp
YGREPGRAGTKLSAWVDVDYGTCPDTRRSVSGGAVMMADGAISWFLRVKK
VTAAASSESEYVAVAEMVNELRFLRQVKEFMTPPIDVAIKIHEDNEDAIK
MARNRFSSRRTRDVDIKHHIVCDAIEGGVVHVEYVRSGEQHAGILTKSVD
VKTFE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like