mRNA_H-elongata_contig130940.2237.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130940.2237.1
Unique NamemRNA_H-elongata_contig130940.2237.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig130940.2237.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.190e-22
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    4 LAEFGIKLSDLAGGTTDSGPDIKTMCANFLLLLYKIYWDWCDSHFCDKATENAFGT 171
            LAE+GIKLSDLAGGTTDSG D+K MC N LL L+KI+WDWCD H  DK+ EN FGT
Sbjct:  285 LAEYGIKLSDLAGGTTDSGSDVKAMCVNILLGLHKIWWDWCDCHLADKSAENTFGT 340          
BLAST of mRNA_H-elongata_contig130940.2237.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.040e-21
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 1
Query:    1 VLAEFGIKLSDLAGGTTDSGPDIKTMCANFLLLLYKIYWDWCDSHFCDKATENAFGT 171
            +LAEFGIKLSDLAGGTTDSG DIK MC NFLL  + +YWDWC  H  D+A E AFGT
Sbjct:  108 LLAEFGIKLSDLAGGTTDSGSDIKAMCTNFLLAQHNVYWDWCVCHLADRAAEAAFGT 164          
BLAST of mRNA_H-elongata_contig130940.2237.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.130e-19
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    1 VLAEFGIKLSDLAGGTTDSGPDIKTMCANFLLLLYKIYWDWCDSHFCDKATENAFGT 171
            VL EFG+K+SDLAGGTTDSG D+K MC NFLL  +K  WDWC  H  D+A E AFGT
Sbjct:  303 VLREFGVKISDLAGGTTDSGSDVKAMCVNFLLAQHKGSWDWCVCHLADRAAEQAFGT 359          
BLAST of mRNA_H-elongata_contig130940.2237.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 6.390e-13
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 VLAEFGIKLSDLAGGTTDSGPDIKTMCANFLLLLYKIYWDWCDSHFCDKATENAFGT 171
            VL EFG++ SDLA GTTDSG D+K++  N L   Y + W+WC  H   KA E+AFGT
Sbjct:  233 VLHEFGLRASDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCCCHLMVKAAEDAFGT 289          
BLAST of mRNA_H-elongata_contig130940.2237.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.680e-12
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 VLAEFGIKLSDLAGGTTDSGPDIKTMCANFLLLLYKIYWDWCDSHFCDKATENAFGT 171
            +L EFG++ SDLA GTTDSG D+K++  N L   Y + W+WC  H   KA E+AFGT
Sbjct:   68 ILNEFGLRPSDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCYCHLMVKAAEDAFGT 124          
BLAST of mRNA_H-elongata_contig130940.2237.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.320e-12
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    1 VLAEFGIKLSDLAGGTTDSGPDIKTMCANFLLLLYKIYWDWCDSHFCDKATENAFGT 171
            +L EFG++ SDLA GTTDSG D+K+   N L   Y + W+WC  H   KA E+ FGT
Sbjct:   36 ILREFGLRPSDLASGTTDSGSDVKSASVNGLYPQYGVLWNWCFCHLMVKAAEDGFGT 92          
BLAST of mRNA_H-elongata_contig130940.2237.1 vs. uniprot
Match: A0A6H5JWR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 7.210e-11
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    1 VLAEFGIKLSDLAGGTTDSGPDIKTMCANFLLLLYKIYWDWCDSHFCDKATENAFGT 171
            +L EFG++ SD+A GTTDSG D+K++  N L   Y + W+WC  H   K  E+ FGT
Sbjct:  133 ILHEFGLRPSDIASGTTDSGSDVKSVSINGLHPHYGVLWNWCFCHLMVKTAEDGFGT 189          
BLAST of mRNA_H-elongata_contig130940.2237.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 8.460e-11
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    1 VLAEFGIKLSDLAGGTTDSGPDIKTMCANFLLLLYKIYWDWCDSHFCDKATENAFGT 171
            +L EFG++ SDLA GT DSG D+K++  N L   + + W+WC  H   KA E+ FGT
Sbjct:   87 ILHEFGLRTSDLASGTADSGSDVKSVSFNGLHPQFGVLWNWCFCHLMVKAAEDGFGT 143          
BLAST of mRNA_H-elongata_contig130940.2237.1 vs. uniprot
Match: A0A6H5JN28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN28_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.190e-10
Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1
Query:    1 VLAEFGIKLSDLAGGTTDSGPDIKTMCANFLLLLYKIYWDWCDSHFCDKATENAF 165
            VL EFG+K+SDLAGGTTDSG D+K MC NFLL  +K+  +    H      E  +
Sbjct:   76 VLREFGVKISDLAGGTTDSGSDVKAMCVNFLLAQHKVSQEIERYHLLYITAEEGY 130          
BLAST of mRNA_H-elongata_contig130940.2237.1 vs. uniprot
Match: A0A6H5JTT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT2_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.930e-9
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    1 VLAEFGIKLSDLAGGTTDSGPDIKTMCANFLLLLYKIYWDWCDSHFCDKATENAFGT 171
            +L EFG++ SDLA GTTDSG D+K++  N L   + + W+ C  H   KA E+ FGT
Sbjct:   44 ILHEFGLRPSDLASGTTDSGLDVKSVSVNGLHPQFGVLWNCCFYHLMVKAAEDGFGT 100          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130940.2237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JYQ2_9PHAE1.190e-2273.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ46_9PHAE1.040e-2171.93Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L1G0_9PHAE1.130e-1966.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS21_9PHAE6.390e-1354.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JZ66_9PHAE1.680e-1252.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEE6_9PHAE4.320e-1250.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWR2_9PHAE7.210e-1147.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8D8_9PHAE8.460e-1147.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN28_9PHAE5.190e-1050.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT2_9PHAE2.930e-947.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130940contigH-elongata_contig130940:655..828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.8082404-CDS-H-elongata_contig130940:654..8281622929777.8082404-CDS-H-elongata_contig130940:654..828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130940 655..828 -
1691679154.0033057-CDS-H-elongata_contig130940:654..8281691679154.0033057-CDS-H-elongata_contig130940:654..828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130940 655..828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130940.2237.1prot_H-elongata_contig130940.2237.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130940 655..828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130940.2237.1

>prot_H-elongata_contig130940.2237.1 ID=prot_H-elongata_contig130940.2237.1|Name=mRNA_H-elongata_contig130940.2237.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
VLAEFGIKLSDLAGGTTDSGPDIKTMCANFLLLLYKIYWDWCDSHFCDKA
TENAFGT*
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mRNA from alignment at H-elongata_contig130940:655..828-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130940.2237.1 ID=mRNA_H-elongata_contig130940.2237.1|Name=mRNA_H-elongata_contig130940.2237.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig130940:655..828- (Himanthalia elongata Himel1 dioecious)
GTGTTGGCGGAGTTCGGTATCAAGCTGTCGGACCTCGCTGGCGGAACGAC GGACTCCGGCCCCGACATCAAGACGATGTGCGCCAACTTCCTCCTGCTGT TGTACAAGATCTACTGGGATTGGTGCGACAGCCACTTTTGCGACAAGGCT ACCGAGAATGCCTTCGGCACCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig130940:655..828-

>mRNA_H-elongata_contig130940.2237.1 ID=mRNA_H-elongata_contig130940.2237.1|Name=mRNA_H-elongata_contig130940.2237.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig130940:655..828- (Himanthalia elongata Himel1 dioecious)
GTGTTGGCGGAGTTCGGTATCAAGCTGTCGGACCTCGCTGGCGGAACGAC
GGACTCCGGCCCCGACATCAAGACGATGTGCGCCAACTTCCTCCTGCTGT
TGTACAAGATCTACTGGGATTGGTGCGACAGCCACTTTTGCGACAAGGCT
ACCGAGAATGCCTTCGGCACCTAGGTGTTGGCGGAGTTCGGTATCAAGCT
GTCGGACCTCGCTGGCGGAACGACGGACTCCGGCCCCGACATCAAGACGA
TGTGCGCCAACTTCCTCCTGCTGTTGTACAAGATCTACTGGGATTGGTGC
GACAGCCACTTTTGCGACAAGGCTACCGAGAATGCCTTCGGCACCTAG
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