mRNA_H-elongata_contig130887.2233.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130887.2233.1
Unique NamemRNA_H-elongata_contig130887.2233.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig130887.2233.1 vs. uniprot
Match: A0A6H5JWC3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWC3_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 8.990e-54
Identity = 92/135 (68.15%), Postives = 109/135 (80.74%), Query Frame = 1 
Query:    1 DASGMTLEMEAIETSLAKLSPSGWKPGVTYDPVADKELMEDDRIEAQKREERNKKSGFFSYVKMVFGAKWADSKSLRKIPSTDVGIFERCKKEAGFVPYYIRKMQHPAAKKAFAFGFLLRLNQGSDEVSTSLKQV 405
            DASGMTLEMEAIETSL KL+PSGW P   YD  AD ELM++DR EA KRE+R K SGFF +VKM+FG K AD++SL+KIP++D  +F +CKK+ GFVPYYIR+MQH  AKKA +FGFLLRL QGSDEV   LKQ+
Sbjct:  216 DASGMTLEMEAIETSLQKLAPSGWVPNDAYDKDADVELMKEDREEAVKREKRKKSSGFFGFVKMIFGGKMADNRSLKKIPTSDSALFSQCKKDGGFVPYYIRQMQHANAKKALSFGFLLRLCQGSDEVPVQLKQL 350
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BLAST of mRNA_H-elongata_contig130887.2233.1 vs. uniprot
Match: A0A6H5JXG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.930e-28
Identity = 61/135 (45.19%), Postives = 90/135 (66.67%), Query Frame = 1 
Query:   10 GMTLEMEAIETSLAKLSPSGWKPGVTYDPVADKELMEDDRIEAQKREERNKKS-GFFSYVKMVFGAKWADSKSLRKIPSTDVGIFERCKKEAGFVPYYI---RKMQHPAAKKAFAFGFLLRLNQGSDEVSTSLKQ 402
            GMTLE+E +ET    L+ SGW  G+++DP  D+ELME+DR  A++REER K++ G F+++KM+ GAK ADS SL+  P+++  + + C + AGF PYY+    K +   A+ A  + F  RL QGS+EV  + KQ
Sbjct:  156 GMTLELEPLETGNKHLAESGWTAGISFDPEGDEELMEEDRAMAERREERKKQACGGFTFLKMLVGAKMADSASLKGTPTSEKNVKQLCTERAGFAPYYLVGEEKSKMANARNALVWAFTRRLCQGSEEVPAATKQ 290
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BLAST of mRNA_H-elongata_contig130887.2233.1 vs. uniprot
Match: D7G5G2_ECTSI (Probable fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G2_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.990e-10
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 DASGMTLEMEAIETSLAKLSPSGWKPGVTYDPVADKELMEDDRIEAQKREERNKKS--GFFSYVKMVFGAKWA 213
            D  GMTLE+E +ET    L+ SGW  G+++DP  D+ELME+DR+ A++REER K++  GF S    +  A +A
Sbjct:   44 DTLGMTLELEPLETGNEHLAESGWTAGISFDPEGDEELMEEDRVMAERREERKKQACGGFTSADNTILRAHFA 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130887.2233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWC3_9PHAE8.990e-5468.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JXG8_9PHAE1.930e-2845.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5G2_ECTSI1.990e-1046.58Probable fusion protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130887contigH-elongata_contig130887:146..1405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size393
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130887.2233.1prot_H-elongata_contig130887.2233.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130887 146..1393 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.3817236-CDS-H-elongata_contig130887:145..3691622929777.3817236-CDS-H-elongata_contig130887:145..369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130887 146..369 -
1691679153.8778148-CDS-H-elongata_contig130887:145..3691691679153.8778148-CDS-H-elongata_contig130887:145..369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130887 146..369 -
1622929777.3968964-CDS-H-elongata_contig130887:1224..13931622929777.3968964-CDS-H-elongata_contig130887:1224..1393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130887 1225..1393 -
1691679153.8881612-CDS-H-elongata_contig130887:1224..13931691679153.8881612-CDS-H-elongata_contig130887:1224..1393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130887 1225..1393 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.410977-UTR-H-elongata_contig130887:1393..14051622929777.410977-UTR-H-elongata_contig130887:1393..1405Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130887 1394..1405 -
1691679153.8958666-UTR-H-elongata_contig130887:1393..14051691679153.8958666-UTR-H-elongata_contig130887:1393..1405Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130887 1394..1405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130887.2233.1

>prot_H-elongata_contig130887.2233.1 ID=prot_H-elongata_contig130887.2233.1|Name=mRNA_H-elongata_contig130887.2233.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MTLEMEAIETSLAKLSPSGWKPGVTYDPVADKELMEDDRIEAQKREERNK
KSGFFSYVKMVFGAKWADSKSLRKIPSTDVGIFERCKKEAGFVPYYIRKM
QHPAAKKAFAFGFLLRLNQGSDEVSTSLKQV
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mRNA from alignment at H-elongata_contig130887:146..1405-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130887.2233.1 ID=mRNA_H-elongata_contig130887.2233.1|Name=mRNA_H-elongata_contig130887.2233.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1260bp|location=Sequence derived from alignment at H-elongata_contig130887:146..1405- (Himanthalia elongata Himel1 dioecious)
GACGCGTCGGGCATGACGCTTGAGATGGAAGCGATCGAGACGAGCCTGGC
GAAATTGTCCCCCAGCGGCTGGAAGCCTGGCGTTACGTATGACCCCGTCG
CGGATAAGGAGCTGATGGAGGATGACCGTATCGAGGCGCAAAAGAGAGAG
GAGAGGAACAAAAAGAGCGGCTTTTTCTCATGTGAGGCAACCACCGTACT
CCACCGCGCACCGCGTCGCGTCGCATCGCACCCTAGTCGGCGCTGCACAG
CACAGTCCTTGGTGTCGGGGTAAAATTATTTTAGGGGTAAAGCAACTGGT
CACGAATTTGTTGTGGCGTCGAGGAGACAGACGCCTGGTTTACGACCTCG
ACTATAGGCTCCATTGGCGAAGGCCTCTTTTTCGTGTTGTGCCAATGTTT
CCCGACGCGATAAGCGTTTCTGCAGGCAATTGTGGACGAGACTGTCGGCT
CTGTGTGCTAAGAGTAGGACGAGAGATGATGTAAAGAAACGGCGGCGCTC
TTTTTTTTTCTTCTTCTTTTTTTTTCTTCTTTTTTTCTCGGAAGTTTATT
TCTTTTTCTTCTAGCGGGGATGATTCCTTTTCTTCTCGCAGGTGGAAGCG
TCAAATCAATAGACGCGAAACCTGGGACTAAAACCTACCATTTTTAATAA
GCGATTGGGGAACTTCGGAAGCCGCCACGTTTTCCTACTGAACGCCATTT
TCTCTCTTTTGGGTGATGAGTCTTGGTGAAAGTTACACCGGGGGTGTCAA
ATAGACCCCCGCCAGTGGACGCAGAACGTTGAAGTTGTTTGACATTTTCC
GAACCCACCCGGAGAGAATAACCAAACCCTTTAGTCACGCCCTCTGCGCG
TGACTACCGTGTTGCTAGGCTTGGATGTTTCCCGAATCGATGTGCGTGGG
TGATAAAAGGCAACCGCATGTCGGCCTTAATAGCCTCGCCCTATAGGAGA
TGAATCTGTACGCCTTGAGCCCCCCTCCCCCCCGCCCCCCCCCCTCCTCC
TGACTCAACTCTGTCTGTTCCACTCGTTTTTGGCAGACGTGAAGATGGTG
TTCGGTGCGAAGTGGGCTGATAGCAAGTCGCTGCGGAAGATCCCATCCAC
TGACGTTGGCATCTTCGAGAGGTGCAAGAAGGAGGCAGGGTTTGTGCCCT
ACTACATCCGCAAGATGCAACACCCCGCTGCCAAGAAGGCTTTCGCGTTC
GGCTTCCTCCTGCGCCTTAACCAGGGCTCGGACGAGGTGTCCACGAGCCT
TAAGCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig130887:146..1405-

>mRNA_H-elongata_contig130887.2233.1 ID=mRNA_H-elongata_contig130887.2233.1|Name=mRNA_H-elongata_contig130887.2233.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig130887:146..1405- (Himanthalia elongata Himel1 dioecious)
ATGACGCTTGAGATGGAAGCGATCGAGACGAGCCTGGCGAAATTGTCCCC
CAGCGGCTGGAAGCCTGGCGTTACGTATGACCCCGTCGCGGATAAGGAGC
TGATGGAGGATGACCGTATCGAGGCGCAAAAGAGAGAGGAGAGGAACAAA
AAGAGCGGCTTTTTCTCATATGACGCTTGAGATGGAAGCGATCGAGACGA
GCCTGGCGAAATTGTCCCCCAGCGGCTGGAAGCCTGGCGTTACGTATGAC
CCCGTCGCGGATAAGGAGCTGATGGAGGATGACCGTATCGAGGCGCAAAA
GAGAGAGGAGAGGAACAAAAAGAGCGGCTTTTTCTCATACGTGAAGATGG
TGTTCGGTGCGAAGTGGGCTGATAGCAAGTCGCTGCGGAAGATCCCATCC
ACTGACGTTGGCATCTTCGAGAGGTGCAAGAAGGAGGCAGGGTTTGTGCC
CTACTACATCCGCAAGATGCAACACCCCGCTGCCAAGAAGGCTTTCGCGT
TCGGCTTCCTCCTGCGCCTTAACCAGGGCTCGGACGAGGTGTCCACGAGC
CTTAAGCAGGTGACGTGAAGATGGTGTTCGGTGCGAAGTGGGCTGATAGC
AAGTCGCTGCGGAAGATCCCATCCACTGACGTTGGCATCTTCGAGAGGTG
CAAGAAGGAGGCAGGGTTTGTGCCCTACTACATCCGCAAGATGCAACACC
CCGCTGCCAAGAAGGCTTTCGCGTTCGGCTTCCTCCTGCGCCTTAACCAG
GGCTCGGACGAGGTGTCCACGAGCCTTAAGCAGGTG
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