mRNA_H-elongata_contig130885.2232.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130885.2232.1
Unique NamemRNA_H-elongata_contig130885.2232.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130885.2232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130885contigH-elongata_contig130885:575..922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.3288066-UTR-H-elongata_contig130885:574..6011622929777.3288066-UTR-H-elongata_contig130885:574..601Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130885 575..601 +
1691679153.8443458-UTR-H-elongata_contig130885:574..6011691679153.8443458-UTR-H-elongata_contig130885:574..601Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130885 575..601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.3401477-CDS-H-elongata_contig130885:601..9221622929777.3401477-CDS-H-elongata_contig130885:601..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130885 602..922 +
1691679153.8575914-CDS-H-elongata_contig130885:601..9221691679153.8575914-CDS-H-elongata_contig130885:601..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130885 602..922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130885.2232.1prot_H-elongata_contig130885.2232.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130885 602..922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130885.2232.1

>prot_H-elongata_contig130885.2232.1 ID=prot_H-elongata_contig130885.2232.1|Name=mRNA_H-elongata_contig130885.2232.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MRCARLALGLQLQGTAHLVWKSGDIVDFDKPITDGVTLYLETTIAPHDDY
YSYSGGGTVGSGGSSGGNGGGSGNGIGGGSGGSGGGLAQRRSSVRGNACR
WQGGDGD
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mRNA from alignment at H-elongata_contig130885:575..922+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130885.2232.1 ID=mRNA_H-elongata_contig130885.2232.1|Name=mRNA_H-elongata_contig130885.2232.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at H-elongata_contig130885:575..922+ (Himanthalia elongata Himel1 dioecious)
TACGAAGGCGCAACGGAAGGCGCCGTCATGAGGTGCGCGCGCCTTGCCCT
AGGCCTTCAGTTGCAAGGAACCGCCCACCTTGTGTGGAAATCCGGGGACA
TTGTCGACTTCGACAAGCCCATCACCGATGGTGTCACGCTCTATCTCGAA
ACTACCATAGCACCGCACGATGACTACTATTCATACAGCGGCGGAGGCAC
CGTGGGCAGTGGTGGAAGTAGTGGTGGCAACGGTGGTGGCAGCGGAAATG
GTATCGGTGGCGGCAGTGGCGGCAGTGGCGGCGGTCTGGCGCAACGACGA
AGCAGTGTGCGGGGGAATGCCTGCCGCTGGCAGGGCGGCGACGGGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig130885:575..922+

>mRNA_H-elongata_contig130885.2232.1 ID=mRNA_H-elongata_contig130885.2232.1|Name=mRNA_H-elongata_contig130885.2232.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig130885:575..922+ (Himanthalia elongata Himel1 dioecious)
ATGAGGTGCGCGCGCCTTGCCCTAGGCCTTCAGTTGCAAGGAACCGCCCA
CCTTGTGTGGAAATCCGGGGACATTGTCGACTTCGACAAGCCCATCACCG
ATGGTGTCACGCTCTATCTCGAAACTACCATAGCACCGCACGATGACTAC
TATTCATACAGCGGCGGAGGCACCGTGGGCAGTGGTGGAAGTAGTGGTGG
CAACGGTGGTGGCAGCGGAAATGGTATCGGTGGCGGCAGTGGCGGCAGTG
GCGGCGGTCTGGCGCAACGACGAAGCAGTGTGCGGGGGAATGCCTGCCGC
TGGCAGGGCGGCGACGGGGACATGAGGTGCGCGCGCCTTGCCCTAGGCCT
TCAGTTGCAAGGAACCGCCCACCTTGTGTGGAAATCCGGGGACATTGTCG
ACTTCGACAAGCCCATCACCGATGGTGTCACGCTCTATCTCGAAACTACC
ATAGCACCGCACGATGACTACTATTCATACAGCGGCGGAGGCACCGTGGG
CAGTGGTGGAAGTAGTGGTGGCAACGGTGGTGGCAGCGGAAATGGTATCG
GTGGCGGCAGTGGCGGCAGTGGCGGCGGTCTGGCGCAACGACGAAGCAGT
GTGCGGGGGAATGCCTGCCGCTGGCAGGGCGGCGACGGGGAC
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