mRNA_H-elongata_contig102579.223.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102579.223.1
Unique NamemRNA_H-elongata_contig102579.223.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A6H5KVU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU6_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.130e-30
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 1
Query:    1 VDVIVDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228
            VDV+ DLRPPEPPFGLA+VQSVKT YFPQ +AC+ L I   VFGR+VGSV V+PG++DLGLNLKQN RYQLLGYSR
Sbjct:  199 VDVLADLRPPEPPFGLAIVQSVKTAYFPQHKACQTLGISPQVFGRIVGSVSVDPGRVDLGLNLKQNGRYQLLGYSR 274          
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: D7FME4_ECTSI (5\'-3\' exoribonuclease 1 (Exonuclease 2) (Exonuclease II) (Exo II) (P140) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME4_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 6.520e-30
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 VDVIVDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228
            VDV+ DLRPPEPPFGLA+VQSVKT YFPQ +AC+ L I   VFGR+VGSV V+PG++DL LNLKQN RYQLLGYSR
Sbjct:  332 VDVLADLRPPEPPFGLAIVQSVKTAYFPQHKACQTLGISPQVFGRIVGSVSVDPGRVDLALNLKQNGRYQLLGYSR 407          
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A835Z4G8_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.240e-23
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    1 VDVIVDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228
            VDV+VDLRPPEPPFG AV  +V+  Y+P    C+ L I+  VFG+VVG+V  +PG+ D+GLNLK N RYQLLGYSR
Sbjct:  830 VDVVVDLRPPEPPFGAAVAAAVQDRYYPAHAVCQRLRIRPDVFGKVVGTVNADPGRYDIGLNLKANGRYQLLGYSR 905          
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A7S3MGQ7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGQ7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.520e-19
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    1 VDVIVDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228
            VDV   L PPEPPFG ++  S+K  Y+  +  C +L I  SV G++VG V V+PG+ DLGLNLK+N +YQLLGYS+
Sbjct:  415 VDVEFTLYPPEPPFGYSIANSIKEEYYTSKDLCALLQITPSVLGKIVGMVRVDPGRADLGLNLKRNGQYQLLGYSQ 490          
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A6V1PVC7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PVC7_HETAK)

HSP 1 Score: 85.9 bits (211), Expect = 7.890e-18
Identity = 38/74 (51.35%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    7 VIVDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228
            V+V+ R PEPPFGL + +S++  Y P  +  + L ++  VFG+VVGSV +EPG++++GLNLK N ++QLLGYSR
Sbjct:  756 VVVEERDPEPPFGLNIARSIQEQYVPAPQLARALGLRGDVFGKVVGSVRIEPGRIEVGLNLKWNGQFQLLGYSR 829          
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A7S0BVY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVY8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.550e-14
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   13 VDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228
            V + PPEPPFGLA+ +SVK  Y     A K+L +  SVFG++ GS+ V+PG+ DLGLNLK  +   + GY+R
Sbjct:  161 VRIIPPEPPFGLAIARSVKESYVSSHDAAKVLHLDPSVFGKITGSLSVDPGRYDLGLNLKYKEGLCVSGYTR 232          
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A7S2UEG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEG0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.350e-14
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 VDVIVDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228
            V V V + PPEPPFGLA+ +SV+  Y     A K+L I   +FG++ GS+  +PG+ DLGLNLK      +LGY+R
Sbjct:  136 VSVTVAVVPPEPPFGLAIARSVQESYISSSDAAKVLNIHPGIFGKITGSLHFDPGRYDLGLNLKYKHDLSVLGYTR 211          
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A7S2PS12_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PS12_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.310e-13
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   13 VDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228
            V + PPEPPFGLA+ +SV+  Y     A K+L +   V G++ GS+LV PG+ DLGLNLK      +LGY+R
Sbjct:  631 VHVLPPEPPFGLAIAKSVQDTYVSSIEAAKLLKLNPGVLGKLTGSLLVNPGRYDLGLNLKFKKEMYVLGYTR 702          
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A7S2RYB5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RYB5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 9.320e-13
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    1 VDVIVDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228
            V + V + PPEPPFGLA+ +SV+  Y     A ++L +   +FG++ GS+   PG+ DLGLNLK      +LGY+R
Sbjct:   79 VGIKVLVIPPEPPFGLAIARSVQESYISSFDASRVLKMNPGIFGKIAGSLHFNPGRYDLGLNLKYKQDLCVLGYTR 154          
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A6G0WCS2_9STRA (5'-3' exoribonuclease 1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCS2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.840e-12
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    7 VIVDLRPP--EPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228
            V V +R P  EPPFG A+ +S+  H++P    C+ L I+ S  GR+ GS+LV PG+ D+GLN+K      L GY R
Sbjct:  871 VTVSIRVPSAEPPFGYAIAESISDHFYPSFVICQKLGIQPSTLGRITGSLLVNPGRYDIGLNMKFKKELTLAGYCR 946          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KVU6_9PHAE1.130e-3076.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FME4_ECTSI6.520e-3075.005\'-3\' exoribonuclease 1 (Exonuclease 2) (Exonucl... [more]
A0A835Z4G8_9STRA2.240e-2361.84XRN 5'-3' exonuclease N-terminus-domain-containing... [more]
A0A7S3MGQ7_9STRA6.520e-1953.95Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6V1PVC7_HETAK7.890e-1851.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0BVY8_9STRA2.550e-1450.00Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2UEG0_9STRA3.350e-1447.37Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2PS12_9STRA2.310e-1348.61Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2RYB5_9STRA9.320e-1343.42Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A6G0WCS2_9STRA3.840e-1244.745'-3' exoribonuclease 1 n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102579contigH-elongata_contig102579:1599..1829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue1.9e-25
Seed eggNOG ortholog2880.D7FME4
KEGG koko:K12618
KEGG Pathwayko03008,ko03018,map03008,map03018
EggNOG free text desc.5'-3' exoribonuclease activity
EggNOG OGsCOG5049@1,KOG2045@2759
COG Functional cat.ADL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929563.1775196-CDS-H-elongata_contig102579:1598..18291622929563.1775196-CDS-H-elongata_contig102579:1598..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102579 1599..1829 +
1691679071.6708684-CDS-H-elongata_contig102579:1598..18291691679071.6708684-CDS-H-elongata_contig102579:1598..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102579 1599..1829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102579.223.1prot_H-elongata_contig102579.223.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102579 1599..1829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102579.223.1

>prot_H-elongata_contig102579.223.1 ID=prot_H-elongata_contig102579.223.1|Name=mRNA_H-elongata_contig102579.223.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
VDVIVDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSV
LVEPGKLDLGLNLKQNDRYQLLGYSR*
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mRNA from alignment at H-elongata_contig102579:1599..1829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102579.223.1 ID=mRNA_H-elongata_contig102579.223.1|Name=mRNA_H-elongata_contig102579.223.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig102579:1599..1829+ (Himanthalia elongata Himel1 dioecious)
GTGGACGTTATTGTGGATCTTCGACCCCCCGAGCCTCCTTTCGGGCTTGC TGTGGTGCAGTCTGTCAAGACGCATTACTTCCCACAGCAGCGCGCCTGCA AGATCCTAATGATCAAGGCCAGTGTGTTCGGGAGGGTGGTCGGGAGCGTT CTCGTGGAGCCCGGCAAGCTGGACCTGGGTCTGAACCTCAAGCAGAACGA CCGCTACCAGCTGTTGGGATACTCGCGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig102579:1599..1829+

>mRNA_H-elongata_contig102579.223.1 ID=mRNA_H-elongata_contig102579.223.1|Name=mRNA_H-elongata_contig102579.223.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig102579:1599..1829+ (Himanthalia elongata Himel1 dioecious)
GTGGACGTTATTGTGGATCTTCGACCCCCCGAGCCTCCTTTCGGGCTTGC
TGTGGTGCAGTCTGTCAAGACGCATTACTTCCCACAGCAGCGCGCCTGCA
AGATCCTAATGATCAAGGCCAGTGTGTTCGGGAGGGTGGTCGGGAGCGTT
CTCGTGGAGCCCGGCAAGCTGGACCTGGGTCTGAACCTCAAGCAGAACGA
CCGCTACCAGCTGTTGGGATACTCGCGGTAAGTGGACGTTATTGTGGATC
TTCGACCCCCCGAGCCTCCTTTCGGGCTTGCTGTGGTGCAGTCTGTCAAG
ACGCATTACTTCCCACAGCAGCGCGCCTGCAAGATCCTAATGATCAAGGC
CAGTGTGTTCGGGAGGGTGGTCGGGAGCGTTCTCGTGGAGCCCGGCAAGC
TGGACCTGGGTCTGAACCTCAAGCAGAACGACCGCTACCAGCTGTTGGGA
TACTCGCGGTAA
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