mRNA_H-elongata_contig102554.222.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102554.222.1
Unique NamemRNA_H-elongata_contig102554.222.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig102554.222.1 vs. uniprot
Match: A0A6H5KZQ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ1_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 7.590e-6
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 2 
Query:  134 VWAYGNGLMHPDLYFTGRELAFCVKATVQLAWKDRRQADKGEVTFRA 274
            +WAY NGL+H D   T   L F  + + QLAW +RR+AD+ EVTFRA
Sbjct:  153 LWAYHNGLVHADFCLTRGNLVF-FEGSCQLAWDERRRADRVEVTFRA 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102554.222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZQ1_9PHAE7.590e-653.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102554contigH-elongata_contig102554:142..432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size207
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102554.222.1prot_H-elongata_contig102554.222.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102554 210..432 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929563.085745-UTR-H-elongata_contig102554:141..2091622929563.085745-UTR-H-elongata_contig102554:141..209Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102554 142..209 -
1691679071.6419625-UTR-H-elongata_contig102554:141..2091691679071.6419625-UTR-H-elongata_contig102554:141..209Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102554 142..209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929563.1041608-CDS-H-elongata_contig102554:209..2811622929563.1041608-CDS-H-elongata_contig102554:209..281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102554 210..281 -
1691679071.6512852-CDS-H-elongata_contig102554:209..2811691679071.6512852-CDS-H-elongata_contig102554:209..281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102554 210..281 -
1622929563.1199276-CDS-H-elongata_contig102554:297..4321622929563.1199276-CDS-H-elongata_contig102554:297..432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102554 298..432 -
1691679071.6607375-CDS-H-elongata_contig102554:297..4321691679071.6607375-CDS-H-elongata_contig102554:297..432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102554 298..432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102554.222.1

>prot_H-elongata_contig102554.222.1 ID=prot_H-elongata_contig102554.222.1|Name=mRNA_H-elongata_contig102554.222.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
GGSTQKVYGNSLTWEILVQGGRGAPAGGTSGQLRGWASRCLITCCLGVWK
WANASRFIFHGKGTSVLC*
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mRNA from alignment at H-elongata_contig102554:142..432-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102554.222.1 ID=mRNA_H-elongata_contig102554.222.1|Name=mRNA_H-elongata_contig102554.222.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at H-elongata_contig102554:142..432- (Himanthalia elongata Himel1 dioecious)
GGAGGCAGCACACAGAAGGTGTACGGAAACTCCTTAACATGGGAGATACT
GGTGCAAGGTGGAAGAGGTGCGCCGGCCGGGGGCACGAGTGGGCAGTTAC
GTGGTTGGGCCTCGCGCTGTCTTATCACCTGCTGTGCAGGGCGTCAGAAA
GTTGGGCGTATGGAAATGGGCTAATGCATCCCGATTTATATTTCACGGGA
AGGGAACTAGCGTTTTGTGTTAAGGCAACAGTACAACTAGCTTGGAAGGA
TAGGCGGCAGGCCGACAAGGGGGAAGTAACGTTTCGAGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig102554:142..432-

>mRNA_H-elongata_contig102554.222.1 ID=mRNA_H-elongata_contig102554.222.1|Name=mRNA_H-elongata_contig102554.222.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig102554:142..432- (Himanthalia elongata Himel1 dioecious)
GGAGGCAGCACACAGAAGGTGTACGGAAACTCCTTAACATGGGAGATACT
GGTGCAAGGTGGAAGAGGTGCGCCGGCCGGGGGCACGAGTGGGCAGTTAC
GTGGTTGGGCCTCGCGCTGTCTTATCACCTGCTGTGGAGGCAGCACACAG
AAGGTGTACGGAAACTCCTTAACATGGGAGATACTGGTGCAAGGTGGAAG
AGGTGCGCCGGCCGGGGGCACGAGTGGGCAGTTACGTGGTTGGGCCTCGC
GCTGTCTTATCACCTGCTGTTTGGGCGTATGGAAATGGGCTAATGCATCC
CGATTTATATTTCACGGGAAGGGAACTAGCGTTTTGTGTTAATTGGGCGT
ATGGAAATGGGCTAATGCATCCCGATTTATATTTCACGGGAAGGGAACTA
GCGTTTTGTGTTAA
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