mRNA_H-elongata_contig13061.2219.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13061.2219.1
Unique NamemRNA_H-elongata_contig13061.2219.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: D7FP90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP90_ECTSI)

HSP 1 Score: 456 bits (1172), Expect = 2.180e-158
Identity = 208/281 (74.02%), Postives = 235/281 (83.63%), Query Frame = 1
Query:    1 CPNDVHVFDFERHHWAEVKVWGDAPLPRELFGMCAGPISGTIIVAGGTGVEMDSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKINEESVPTPVASGATALANVPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
            C NDV+VF+ E H W++V V GDAPLPR  FGMCAGP  GT+IVAGGTGVEMDSLRAD +E++ P+RTWT +L DS+ TPC+FYGQSVC+YGDN+LLFGGSTGL YTN LFEY ++  KW+RLVTSGR PSPRYKHQ VVV  K+YVI GGCFKP+QS IDLYCL+L++LVWEE  M GE  K RVAH+CSFDAETDTI+LWGGFTS+LSRLQDFFGFHCPTATWV++ EE    PVA GAT L   PP  AFHSAAFFQG LYVFSGANGDVRY DVWRF
Sbjct:   77 CLNDVYVFNLELHRWSKVTVKGDAPLPRASFGMCAGPAPGTLIVAGGTGVEMDSLRADVVEYNVPNRTWTQILTDSEETPCKFYGQSVCTYGDNLLLFGGSTGLHYTNDLFEYNVRTNKWKRLVTSGRMPSPRYKHQAVVVGHKMYVIGGGCFKPEQSGIDLYCLDLRSLVWEETTMKGELPKARVAHSCSFDAETDTIYLWGGFTSELSRLQDFFGFHCPTATWVRMAEEPTQAPVAGGATDLVGAPPARAFHSAAFFQGGLYVFSGANGDVRYSDVWRF 357          
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: D7FP81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP81_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 9.930e-123
Identity = 172/283 (60.78%), Postives = 207/283 (73.14%), Query Frame = 1
Query:    1 CPNDVHVFDFERHHWAEVKVWGDAPLPRELFGMCAGPISGTIIVAGGTGVEMDSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWE--EIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKINEESVPTPVASGATALANVPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
            C ND++VFD + H W      GD+   R  FGMC GP  GT+IVAGGTGVEMDSLRAD +E++  +RTWT VL DS+ TPC+FYGQSVC+YGDN+LLFGGSTGL Y+N LFEY +   +WR+L T+GRKPSPRYKHQ V V DK+YVI GGCFKP+QS+IDLYCL+LKTLVWE  E  M G+  K RVAH+CSFD     I+LWGGFT +LSRL DF+ ++C +A W ++        V  G  A    PP  AFHSA F  GALY+FSGANGD+RY DVWR+
Sbjct:   72 CLNDMYVFDLQLHRWERAVPKGDSIHARASFGMCQGPTPGTVIVAGGTGVEMDSLRADVVEYNTRTRTWTSVLTDSEETPCKFYGQSVCTYGDNLLLFGGSTGLHYSNDLFEYNVCSNRWRKLTTTGRKPSPRYKHQAVAVGDKMYVIGGGCFKPEQSSIDLYCLDLKTLVWEMDETEMKGDLPKARVAHSCSFDPVGGDIYLWGGFTGELSRLADFYVYNCKSACWRRL--------VMEGGDAS---PPARAFHSAVFHDGALYLFSGANGDIRYNDVWRY 343          
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: A0A836CEB6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEB6_9STRA)

HSP 1 Score: 358 bits (919), Expect = 6.330e-120
Identity = 168/289 (58.13%), Postives = 208/289 (71.97%), Query Frame = 1
Query:    1 CPNDVHVFDFERHHWAEVKVWGDAPLPRELFGMCAGPISG-TIIVAGGTGVEMDSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKINEESVPTPVASGATALAN-------VPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
            C NDV+ FD + H W  V V G+ PLPR  FGMCA P    +I+VAGGTGVEMDSLRAD +EFD  +R W  V+ DS+ TPCRFYGQS+C+YG+++LLFGGSTG+ YTN L+EY     +WR+L T+GRKP+PRYKHQ V+V   +YVI GGCFKP+QS ID++ L+L TL W+E+  +G+  K RVAH+C +DA T TIFLWGGFTS+LSRLQDF+  HC TATW      ++   V SG             +PP  AFH+A FF+ ALYVFSGANGDVRY DVWR+
Sbjct:   61 CLNDVYTFDLDTHQWNAVAVNGEPPLPRASFGMCARPSPHRSIVVAGGTGVEMDSLRADIVEFDTRTRAWRRVVTDSEETPCRFYGQSLCTYGESLLLFGGSTGMHYTNDLYEYNTTTQRWRKLTTTGRKPTPRYKHQAVIVGASMYVIGGGCFKPEQSTIDVHRLDLATLAWDEVATSGDVPKSRVAHSCCYDAGTGTIFLWGGFTSELSRLQDFYTLHCETATWRAA--AALAPAVVSGVVXXXXXXXXXXXLPPARAFHAACFFEDALYVFSGANGDVRYSDVWRY 347          
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: A0A836CQE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQE2_9STRA)

HSP 1 Score: 341 bits (875), Expect = 2.490e-113
Identity = 167/290 (57.59%), Postives = 198/290 (68.28%), Query Frame = 1
Query:    1 CPNDVHVFDFERHHWAEVKVWGDA-PLPRELFGMCAGPISGTIIVAGGTGVEMDSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKINEESVPTPVASGATALANV--------PPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
            C ND++ FD + H W  V   GD+ P  R  FGMCAGP + TIIVAGGTGVEMDSLR+D +EFD  ++ W+ +  D +  P RFYGQ+VC YG  +LLFGGSTGL YTN LFEY +    WR+L T+G++PSPRYKHQ VVV D +YVI GGCFKP+Q+ IDLY L+L+TLVW+   M GE  + RVAH+CSFD  T TI+LWGGFT +LSRLQDFF +    A W +I      TP A  A   A          P   AFHSA F  GALYVFSGANGDVRY DVWRF
Sbjct:   70 CLNDMYTFDLDSHRWETVTAKGDSVPSARASFGMCAGPAANTIIVAGGTGVEMDSLRSDVLEFDTRTKLWSKITGDGEDAPSRFYGQTVCRYGSVLLLFGGSTGLHYTNDLFEYNMTTNCWRKLATTGKRPSPRYKHQAVVVGDAMYVIGGGCFKPEQAAIDLYRLDLRTLVWDTPAMGGEVPRARVAHSCSFDPATSTIYLWGGFTGELSRLQDFFAYDTARAEWAEIK-----TPPADAAAPSAXXXXXXXXXXPYARAFHSAVFHDGALYVFSGANGDVRYNDVWRF 354          
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: A0A835ZFC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFC9_9STRA)

HSP 1 Score: 339 bits (869), Expect = 2.860e-112
Identity = 163/291 (56.01%), Postives = 196/291 (67.35%), Query Frame = 1
Query:    1 CPNDVHVFDFERHHWAEVKVWGDA-PLPRELFGMCAGPISGTIIVAGGTGVEMDSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKINEESVPTPVASGATALAN---------VPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
            C ND++ FD +RH W  +   G+  P  R  F MC+GP   T+IVAGGTGVEMDSLR+D ++FD  +R W  + RD    P +FYGQ+VC YGD +LLFGGSTGL YTN LFEY +    WR+LVT GR+PSPRYKHQ VVV D +YVI GGCFKP+QS ID+YCLNL+TLVW + R  G   + RVAH+CSFD ET TI+LWGGFT +LSRLQDF+ +H PT  W +I                            P   AFHSA F++GALYVFSGANGDVRY DVWR+
Sbjct:   75 CLNDMYTFDLDRHVWELIPHRGEEMPTARASFAMCSGPDEKTLIVAGGTGVEMDSLRSDILQFDTRTRRWIKLHRDGDDAPSKFYGQTVCRYGDVLLLFGGSTGLHYTNDLFEYNVVTNCWRKLVTQGRRPSPRYKHQAVVVGDFMYVIGGGCFKPEQSAIDMYCLNLRTLVWAQPRSAGAVPRARVAHSCSFDPETCTIYLWGGFTGELSRLQDFYAYHAPTGEWTEIRTAPPXXXXXXXXXXXXXXXXXXXXXVAPYARAFHSAVFYKGALYVFSGANGDVRYNDVWRY 365          
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: A0A835Z314_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z314_9STRA)

HSP 1 Score: 233 bits (594), Expect = 5.680e-71
Identity = 123/280 (43.93%), Postives = 152/280 (54.29%), Query Frame = 1
Query:    7 NDVHVFDFERHHWAEVKVWGDAPLPRELFGMCAGPI-SGTIIVAGGTGVEMDSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKINEESVPTPVASGATALANVPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
            ND + F+ E H W  VKV  + P  R  F MCA P  S +I VAGGTG + DSL  D +EFD  +RTW+ V+ D   TP   YGQS C+YG +++LFGG++GL Y N                                          G F P  S +D+YCLNL TLVW+ +  +GE  + RVAHTCSFD  TDTI +WGGF+S L RLQDF   HC TATW                T  +N PP  AFH+A F +GALY+F GA+GD RY DVWR+
Sbjct:   66 NDAYSFNLETHQWQLVKVNSEPPTARSSFSMCAPPDGSRSIFVAGGTGADPDSLCHDIVEFDTHARTWSRVV-DVGDTPWILYGQSQCAYGGSLILFGGTSGLEYVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAFMPQYSVVDVYCLNLITLVWKAVNTSGEAPQSRVAHTCSFDGATDTILMWGGFSSTLHRLQDFHILHCSTATWT---------------TETSNQPPPRAFHAACFHKGALYLFCGADGDNRYNDVWRY 329          
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: A0A7S2XVZ9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVZ9_9STRA)

HSP 1 Score: 228 bits (582), Expect = 3.370e-69
Identity = 114/284 (40.14%), Postives = 160/284 (56.34%), Query Frame = 1
Query:    1 CPNDVHVFDFERHHWAEVKVWGDAPLPRELFGMCAGPISGTIIVAGGTGVEMDSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATW---VKINEESVPTPVASGATALANVPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
            C +D  VFDF    W+ V+  G+ P  R  FGM  GP  GT+IVAGGTG +MD+  +D  E++  S TW  +++  K   C++YGQS+C Y  N+  FGGS G  Y+N L+ Y     +   + T+G+ P PRYK Q +VV+D L VI GG ++P    ID++ L+L TL W + + +G   + RVAHTC++D  T  I+LWGGF   L RL DF      T  W   + ++ +S               P   AFH +    G+ Y+F GA+GD R+ DVWRF
Sbjct:   74 CLSDFLVFDFSTQSWSAVQTRGEPPHARASFGMSRGPDPGTLIVAGGTGQDMDTF-SDIYEYNISSSTWRLLIKGEKANFCKYYGQSICEYKGNLFFFGGSRGRTYSNVLYRYDCAQEEGAAVPTTGKAPCPRYKQQMMVVKDSLLVIGGGNYRPPTHQIDVHELDLLTLNWSQWKTSGNVPQGRVAHTCTYDENTHQIYLWGGFNVVLHRLNDFHVLDIATRKWSTIISLDNQS---------------PRPRAFHCSCLHDGSFYIFGGADGDFRHSDVWRF 341          
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: A0A7S2XUR3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUR3_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.110e-58
Identity = 88/229 (38.43%), Postives = 138/229 (60.26%), Query Frame = 1
Query:  157 DSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKINEESVPTPVASGATALANVPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
            + L +D  EF   SRTW  +   +    CR YGQS CS+   ++ FGGS+G  Y+N+   + ++ +KW ++ T+G KP+PRYKHQ VVV   ++++ GG ++P +  +D++ LNLKTL W+E++  G P + RVAHTC +D  ++TI++WGGF   L RL+DF+     T  W  I+  +               P   AFH++   +G+LY+F GA+G  R+ DVW++
Sbjct:    2 EELCSDLFEFSTLSRTWRRLASSAF---CRLYGQSCCSFESKLIFFGGSSGKQYSNETVFFDVKQMKWEKISTTGPKPTPRYKHQAVVVGHSMFILGGGNYRPARDKMDVHMLNLKTLEWQEVKCTGMPPEARVAHTCQYDPLSNTIYVWGGFNGRLVRLKDFYALDLGTMKWDSIHCST-------------GCPSARAFHASCLCEGSLYIFGGADGHKRHADVWKY 214          
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: A0A7S2UZD9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZD9_9STRA)

HSP 1 Score: 201 bits (510), Expect = 2.700e-58
Identity = 94/281 (33.45%), Postives = 156/281 (55.52%), Query Frame = 1
Query:   10 DVHVFDFERHHWAEVKVWGDAPLPRELFGMCAGPISGTIIVAGGTGVEMDSLRADRIEFDDPSRTWTGVLRDSKRTPCRFYGQSVCSYGDNVLLFGGSTGL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKI---NEESVPTPVASGATALANVPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
            D+  FD +   W+ ++  G  P PR    +C GP  GT IVAGG       + +D  EF+  SR W  +   +  + C+FYGQSV SYG +++ FGG +G  Y+N ++   ++  +   L T+G  PSPRYK + V+++  +Y+I G  + P  + +D++ L+L+ LVW+++  +G   + R AH+C  D +   +++WGG++  L RL D +     +  W ++     E  P P A              FH + FF+GA+Y+F G++G+ R+CDVWR+
Sbjct:  104 DLVCFDLKTLKWSPIRTKGFGPFPRTSAAICKGPYEGTFIVAGGASTH-GLVYSDLFEFNVYSRQWRKLKHRADASFCKFYGQSVRSYGSSLIFFGGFSGGAYSNAVYMLDVESGEGSYLNTTGHAPSPRYKQEMVIIDHSMYIIGGSDYTPTINKMDVFILDLQALVWKQVSTSGPIPECRTAHSCVVDDKMQRLYVWGGYSGSLKRLDDGYMLDLQSNMWTQLFSFTNEVTPAPRA--------------FHCSCFFEGAIYIFGGSDGESRHCDVWRY 369          
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Match: A0A7S3XN17_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN17_HETAK)

HSP 1 Score: 199 bits (507), Expect = 2.550e-57
Identity = 101/282 (35.82%), Postives = 155/282 (54.96%), Query Frame = 1
Query:   10 DVHVFDFERHHWAEVKVWGDAPLPRELFGMCAGPISGTIIVAGGTGVEMDSLRADRI-EFDDPSRTWTGVL-RDSKRTPCRFYGQSVCSYGDNVLLFGGST-GL*YTNQLFEYKIQIIKWRRLVTSGRKPSPRYKHQTVVVEDKLYVIEGGCFKPDQSNIDLYCLNLKTLVWEEIRMNGEPRKD-RVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWVKINEESVPTPVASGATALANVPPVWAFHSAAFFQGALYVFSGANGDVRYCDVWRF 843
            D++ FD E   W  +K  GD P PR  F MC      +I + GGT  ++  L    + +F   +R W  V+ R+      R++G+S  +Y +++L FGG   G  +TN+L +  +  + W RL T+G  P  RYKHQ ++V+DKLY++ GGC+ P    ID +CL+L+T+VW ++ M+G    + R AHTC +D     +++WGGF   L  LQD       T  W  +   +       G     N PP  +FH+A F +G+LY F+G++G+ RY DV R+
Sbjct:  141 DINSFDLETRRWNRIKDSGDVPCPRTAFAMCWDK-QDSIFLWGGTDHDLQGLADQEVYQFHIHARKWERVVTRNRGILNLRYFGRSATAYKNSLLFFGGGVKGGRFTNELLQLDLDTMVWSRLETTGEAPCARYKHQALLVQDKLYIVGGGCYLPPTEEIDAFCLDLRTMVWAKLAMSGAALPEGRAAHTCEYDPVGHALYMWGGFNKSLVPLQDLHRLDLATGAWTALCRNAK-----EGGGG--NAPPCRSFHAACFHRGSLYSFNGSDGERRYDDVARY 414          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13061.2219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP90_ECTSI2.180e-15874.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FP81_ECTSI9.930e-12360.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEB6_9STRA6.330e-12058.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CQE2_9STRA2.490e-11357.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZFC9_9STRA2.860e-11256.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z314_9STRA5.680e-7143.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XVZ9_9STRA3.370e-6940.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2XUR3_9STRA1.110e-5838.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2UZD9_9STRA2.700e-5833.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XN17_HETAK2.550e-5735.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13061contigH-elongata_contig13061:1975..2820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue8.3e-43
Seed eggNOG ortholog2880.D7FP90
KEGG koko:K20285
EggNOG free text desc.nitrile biosynthetic process
EggNOG OGsKOG0379@1,KOG0379@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size846
Cds size318
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929776.2733076-UTR-H-elongata_contig13061:1974..25021622929776.2733076-UTR-H-elongata_contig13061:1974..2502Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13061 1975..2502 +
1691679153.4362104-UTR-H-elongata_contig13061:1974..25021691679153.4362104-UTR-H-elongata_contig13061:1974..2502Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13061 1975..2502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929776.288724-CDS-H-elongata_contig13061:2502..28201622929776.288724-CDS-H-elongata_contig13061:2502..2820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13061 2503..2820 +
1691679153.4472191-CDS-H-elongata_contig13061:2502..28201691679153.4472191-CDS-H-elongata_contig13061:2502..2820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13061 2503..2820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13061.2219.1prot_H-elongata_contig13061.2219.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13061 2503..2820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13061.2219.1

>prot_H-elongata_contig13061.2219.1 ID=prot_H-elongata_contig13061.2219.1|Name=mRNA_H-elongata_contig13061.2219.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MNGEPRKDRVAHTCSFDAETDTIFLWGGFTSDLSRLQDFFGFHCPTATWV
KINEESVPTPVASGATALANVPPVWAFHSAAFFQGALYVFSGANGDVRYC
DVWRF*
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mRNA from alignment at H-elongata_contig13061:1975..2820+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13061.2219.1 ID=mRNA_H-elongata_contig13061.2219.1|Name=mRNA_H-elongata_contig13061.2219.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=846bp|location=Sequence derived from alignment at H-elongata_contig13061:1975..2820+ (Himanthalia elongata Himel1 dioecious)
TGCCCCAACGACGTGCACGTGTTCGATTTTGAGCGACACCATTGGGCGGA AGTGAAGGTTTGGGGAGATGCGCCATTGCCGCGAGAACTGTTCGGCATGT GCGCGGGGCCAATCTCCGGCACTATCATTGTCGCGGGTGGCACTGGGGTG GAGATGGATAGCCTGCGAGCCGACAGGATCGAGTTCGACGACCCTAGCCG AACCTGGACGGGGGTTCTGAGGGACTCCAAGCGGACGCCCTGCAGGTTTT ACGGGCAAAGCGTGTGCTCATACGGGGACAACGTGCTGTTGTTTGGTGGC TCCACGGGGCTGTAGTACACAAACCAACTCTTTGAGTATAAGATTCAAAT TATCAAGTGGAGGAGGCTGGTCACGTCAGGGCGGAAACCTTCCCCTAGGT ATAAGCATCAGACGGTCGTGGTGGAGGACAAGCTGTACGTGATCGAGGGC GGGTGCTTCAAGCCGGATCAAAGCAACATAGACCTGTACTGCCTCAACCT GAAGACGCTTGTCTGGGAGGAGATTCGTATGAACGGGGAACCTCGCAAGG ATCGAGTCGCCCACACCTGTAGCTTCGACGCCGAAACCGACACTATCTTT CTTTGGGGGGGCTTCACCAGCGACCTCAGTCGCTTACAAGACTTCTTCGG ATTCCACTGTCCCACGGCAACATGGGTAAAGATAAACGAGGAATCCGTGC CGACGCCGGTGGCGAGTGGAGCGACCGCCCTTGCCAACGTGCCTCCCGTG TGGGCGTTCCACTCAGCGGCATTTTTTCAAGGCGCACTGTACGTTTTTAG TGGCGCGAACGGGGATGTTCGATACTGCGACGTCTGGCGTTTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig13061:1975..2820+

>mRNA_H-elongata_contig13061.2219.1 ID=mRNA_H-elongata_contig13061.2219.1|Name=mRNA_H-elongata_contig13061.2219.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig13061:1975..2820+ (Himanthalia elongata Himel1 dioecious)
ATGAACGGGGAACCTCGCAAGGATCGAGTCGCCCACACCTGTAGCTTCGA
CGCCGAAACCGACACTATCTTTCTTTGGGGGGGCTTCACCAGCGACCTCA
GTCGCTTACAAGACTTCTTCGGATTCCACTGTCCCACGGCAACATGGGTA
AAGATAAACGAGGAATCCGTGCCGACGCCGGTGGCGAGTGGAGCGACCGC
CCTTGCCAACGTGCCTCCCGTGTGGGCGTTCCACTCAGCGGCATTTTTTC
AAGGCGCACTGTACGTTTTTAGTGGCGCGAACGGGGATGTTCGATACTGC
GACGTCTGGCGTTTTTAAATGAACGGGGAACCTCGCAAGGATCGAGTCGC
CCACACCTGTAGCTTCGACGCCGAAACCGACACTATCTTTCTTTGGGGGG
GCTTCACCAGCGACCTCAGTCGCTTACAAGACTTCTTCGGATTCCACTGT
CCCACGGCAACATGGGTAAAGATAAACGAGGAATCCGTGCCGACGCCGGT
GGCGAGTGGAGCGACCGCCCTTGCCAACGTGCCTCCCGTGTGGGCGTTCC
ACTCAGCGGCATTTTTTCAAGGCGCACTGTACGTTTTTAGTGGCGCGAAC
GGGGATGTTCGATACTGCGACGTCTGGCGTTTTTAA
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