mRNA_H-elongata_contig130567.2216.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130567.2216.1
Unique NamemRNA_H-elongata_contig130567.2216.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig130567.2216.1 vs. uniprot
Match: D7G0R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R1_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 3.120e-29
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVLE 159
            RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVLE
Sbjct:  248 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVLE 300
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BLAST of mRNA_H-elongata_contig130567.2216.1 vs. uniprot
Match: A0A6H5JCY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY0_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.130e-29
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVLE 159
            RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVLE
Sbjct:  342 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVLE 394
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BLAST of mRNA_H-elongata_contig130567.2216.1 vs. uniprot
Match: A0A836C760_9STRA (Stromal processing peptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C760_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.680e-24
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVLEVR 165
            RERLFGTGS TNAYTDFHHTVFYASCPVLTPPGWG+ TPML RAL AL DVLE +
Sbjct:   81 RERLFGTGSQTNAYTDFHHTVFYASCPVLTPPGWGKRTPMLPRALEALCDVLEAK 135
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BLAST of mRNA_H-elongata_contig130567.2216.1 vs. uniprot
Match: A0A7S4D551_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D551_HETAK)

HSP 1 Score: 99.8 bits (247), Expect = 1.530e-23
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVLEVR 165
            RERLFGTGS TNAYTDFHHTVFYASCP LTPPGWGR   ML RAL AL+DV+E R
Sbjct:  176 RERLFGTGSQTNAYTDFHHTVFYASCPCLTPPGWGRRVSMLPRALDALVDVMEAR 230
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BLAST of mRNA_H-elongata_contig130567.2216.1 vs. uniprot
Match: A0A8J9TDL0_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TDL0_PHATR)

HSP 1 Score: 82.0 bits (201), Expect = 1.780e-17
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVLEVR 165
            RERLFGTGS TNAYTDFHHTVFYA+CPVL+P G     PML  AL AL+DV+E R
Sbjct:   65 RERLFGTGSQTNAYTDFHHTVFYAACPVLSPRG---NQPMLPMALDALVDVMEAR 116
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BLAST of mRNA_H-elongata_contig130567.2216.1 vs. uniprot
Match: A0A7S2WGW2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WGW2_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.970e-17
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPP-GWGRPTPMLGRALGALLDVLEVR 165
            RERLFGTGS TNAYTDFHHTVFYA+CP L P  G+    PM+  AL AL DV+E R
Sbjct:   53 RERLFGTGSQTNAYTDFHHTVFYAACPTLAPASGYHGQQPMMPMALDALADVMEAR 108
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BLAST of mRNA_H-elongata_contig130567.2216.1 vs. uniprot
Match: A0A7S2V8S7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V8S7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.240e-17
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVLEVR 165
            RERLFGTGS TNAYTDFHHTVFYA+CPV+TP G     PML  AL AL DV+E R
Sbjct:  136 RERLFGTGSQTNAYTDFHHTVFYAACPVVTPRG---NIPMLPMALDALQDVMEAR 187
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BLAST of mRNA_H-elongata_contig130567.2216.1 vs. uniprot
Match: A0A1Z5KE45_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KE45_FISSO)

HSP 1 Score: 82.8 bits (203), Expect = 4.630e-17
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVLEVRERFGK 180
            RERLFGTGS TNAYTDFHHTVFYA+CPV TP G     PML  AL AL+DV+E R   G+
Sbjct:  173 RERLFGTGSQTNAYTDFHHTVFYAACPVQTPRGG---VPMLPMALDALVDVMEARVEPGR 229
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BLAST of mRNA_H-elongata_contig130567.2216.1 vs. uniprot
Match: B5Y4R1_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y4R1_PHATC)

HSP 1 Score: 82.0 bits (201), Expect = 8.620e-17
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVLEVR 165
            RERLFGTGS TNAYTDFHHTVFYA+CPVL+P G     PML  AL AL+DV+E R
Sbjct:   65 RERLFGTGSQTNAYTDFHHTVFYAACPVLSPRG---NQPMLPMALDALVDVMEAR 116
[Close]
BLAST of mRNA_H-elongata_contig130567.2216.1 vs. uniprot
Match: A0A7S2G4F2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G4F2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.490e-16
Identity = 39/55 (70.91%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVLEVR 165
            RERLFGTGS TNAYTDFHHTV+YASCPV  P      T ML RAL AL +VLE R
Sbjct:  161 RERLFGTGSQTNAYTDFHHTVYYASCPVSLPAMPNDRTTMLDRALEALAEVLEAR 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130567.2216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0R1_ECTSI3.120e-29100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCY0_9PHAE3.130e-29100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C760_9STRA1.680e-2485.45Stromal processing peptidase n=1 Tax=Tribonema min... [more]
A0A7S4D551_HETAK1.530e-2381.82Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J9TDL0_PHATR1.780e-1772.73Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A7S2WGW2_9STRA2.970e-1767.86Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2V8S7_9STRA3.240e-1772.73Hypothetical protein (Fragment) n=2 Tax=Amphiprora... [more]
A0A1Z5KE45_FISSO4.630e-1768.33Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B5Y4R1_PHATC8.620e-1772.73Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A7S2G4F2_9STRA6.490e-1670.91Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130567contigH-elongata_contig130567:1507..1686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue2.9e-24
Seed eggNOG ortholog2880.D7G0R1
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0007275,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0022414,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929775.9115021-CDS-H-elongata_contig130567:1506..16861622929775.9115021-CDS-H-elongata_contig130567:1506..1686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130567 1507..1686 -
1691679153.2822754-CDS-H-elongata_contig130567:1506..16861691679153.2822754-CDS-H-elongata_contig130567:1506..1686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130567 1507..1686 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130567.2216.1prot_H-elongata_contig130567.2216.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130567 1507..1686 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130567.2216.1

>prot_H-elongata_contig130567.2216.1 ID=prot_H-elongata_contig130567.2216.1|Name=mRNA_H-elongata_contig130567.2216.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLD
VLEVRERFGK
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mRNA from alignment at H-elongata_contig130567:1507..1686-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130567.2216.1 ID=mRNA_H-elongata_contig130567.2216.1|Name=mRNA_H-elongata_contig130567.2216.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig130567:1507..1686- (Himanthalia elongata Himel1 dioecious)
AGGGAGCGCCTGTTTGGGACAGGCTCGTCTACGAACGCCTACACGGATTT
CCACCACACAGTTTTCTACGCTTCCTGCCCGGTCTTGACACCGCCAGGAT
GGGGGAGACCGACTCCTATGCTTGGCCGCGCGCTGGGGGCCCTTCTAGAT
GTGCTTGAGGTTCGTGAGCGGTTCGGTAAA
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Coding sequence (CDS) from alignment at H-elongata_contig130567:1507..1686-

>mRNA_H-elongata_contig130567.2216.1 ID=mRNA_H-elongata_contig130567.2216.1|Name=mRNA_H-elongata_contig130567.2216.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig130567:1507..1686- (Himanthalia elongata Himel1 dioecious)
AGGGAGCGCCTGTTTGGGACAGGCTCGTCTACGAACGCCTACACGGATTT
CCACCACACAGTTTTCTACGCTTCCTGCCCGGTCTTGACACCGCCAGGAT
GGGGGAGACCGACTCCTATGCTTGGCCGCGCGCTGGGGGCCCTTCTAGAT
GTGCTTGAGGTTCGTGAGCGGTTCGGTAAAAGGGAGCGCCTGTTTGGGAC
AGGCTCGTCTACGAACGCCTACACGGATTTCCACCACACAGTTTTCTACG
CTTCCTGCCCGGTCTTGACACCGCCAGGATGGGGGAGACCGACTCCTATG
CTTGGCCGCGCGCTGGGGGCCCTTCTAGATGTGCTTGAGGTTCGTGAGCG
GTTCGGTAAA
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