mRNA_H-elongata_contig130473.2213.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: D8LDN3_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN3_ECTSI) HSP 1 Score: 132 bits (333), Expect = 7.510e-35 Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 1
Query: 1 PWFTIPQGCYALVTEHGADVDYVTGQAVWPPGLHWGLFFA--VSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
P+FTIP+GCYALVT+ GAD+DY GQAVWP G H GL + VSNLVT+QNVVFDMPVKGC T+DNVTVEIDVAIVFRIMGD
Sbjct: 37 PFFTIPEGCYALVTDAGADIDYSDGQAVWPAGFHMGLPWRLKVSNLVTKQNVVFDMPVKGCITRDNVTVEIDVAIVFRIMGD 118
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A7S2HPB6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HPB6_9STRA) HSP 1 Score: 121 bits (303), Expect = 1.430e-30 Identity = 57/85 (67.06%), Postives = 66/85 (77.65%), Query Frame = 1
Query: 4 WFTIPQGCYALVTEHGADVDYV----TGQAVWPPGLHWGL--FFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
WFTIP GCYA+VT HGAD+DY T AVWPPGLH+ + VSNLVT+Q++V D+PVK CKTKDNVTV IDVA+ FRIMGD
Sbjct: 58 WFTIPDGCYAIVTRHGADLDYTHSDGTTTAVWPPGLHYPYPPWIGVSNLVTKQSIVLDLPVKACKTKDNVTVNIDVALAFRIMGD 142
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A6S9IEP5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IEP5_HETAK) HSP 1 Score: 120 bits (302), Expect = 1.990e-30 Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1
Query: 4 WFTIPQGCYALVTEHGADVDYVTGQAVWPPGLHWGL-FFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
WFTIP+G YALVT HGAD +Y G AVWP G+H G + VS+LVT+Q+VVFDMPVKGCKT DNVTVEIDV + FRIMGD
Sbjct: 39 WFTIPEGMYALVTRHGADENYSGGGAVWPAGIHMGPPWLKVSHLVTKQSVVFDMPVKGCKTMDNVTVEIDVCVTFRIMGD 118
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A7S4KFS0_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4KFS0_9EUKA) HSP 1 Score: 118 bits (296), Expect = 1.270e-29 Identity = 51/81 (62.96%), Postives = 67/81 (82.72%), Query Frame = 1
Query: 1 PWFTIPQGCYALVTEHGADVDYVTGQAVWPPGLHWGL-FFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
PWF++P GCYALVT G D+DY G VWP G + G+ ++ V N+VT+Q+VVF+MPVKGCKT+DNVTV+I+++IVFRIMGD
Sbjct: 42 PWFSVPDGCYALVTRFGKDIDYEDGNPVWPAGFYTGMPWYKVQNIVTKQSVVFNMPVKGCKTQDNVTVQINLSIVFRIMGD 122
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A7S1ZS35_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZS35_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.370e-28 Identity = 56/84 (66.67%), Postives = 66/84 (78.57%), Query Frame = 1
Query: 7 FTIPQGCYALVTEHGADVDYV----TGQAVWPPGLH--WGLFFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
FTIP GCYALVT HGAD+DY T AVWPPGLH + + VSNLVT+Q++V D+PVK CKTKDNVTV ID+++VFRIMGD
Sbjct: 57 FTIPDGCYALVTRHGADLDYTHPDGTTSAVWPPGLHVPFPPWVGVSNLVTKQSIVLDLPVKACKTKDNVTVNIDMSLVFRIMGD 140
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A7S0EDM3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EDM3_9EUKA) HSP 1 Score: 115 bits (288), Expect = 1.770e-28 Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 1
Query: 1 PWFTIPQGCYALVTEHGADVDYVTGQAVWPPGLHWGL-FFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
PWFT+P GCYALVT G D DY GQ +WP G H+G + V LVT+Q+VVF+MPVKGCKT DNVTV+I++A+VFR+M D
Sbjct: 69 PWFTVPDGCYALVTRFGKDEDYAEGQPIWPAGFHFGPPWLKVEFLVTKQSVVFNMPVKGCKTADNVTVQINLAVVFRVMAD 149
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A7S2UMA1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UMA1_9STRA) HSP 1 Score: 114 bits (285), Expect = 4.960e-28 Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 1
Query: 4 WFTIPQGCYALVTEHGADVDYV----TGQAVWPPGLH--WGLFFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
+FTIP GCYA+VT HGAD+DY T AVWP GLH + +F VS LVT+Q+VV D+PVK CKTKDNVTV +DV++VFRIMGD
Sbjct: 41 YFTIPSGCYAIVTRHGADIDYENPDGTRTAVWPAGLHPFYPPWFGVSQLVTKQSVVLDLPVKACKTKDNVTVNVDVSLVFRIMGD 125
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A7S3AUG6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AUG6_9EUKA) HSP 1 Score: 113 bits (283), Expect = 8.510e-28 Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 1
Query: 1 PWFTIPQGCYALVTEHGADVDYVTGQAVWPPGLHWGL-FFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
PWF++P GCYALVT G D+ Y VWP G WG + VSN+VT+Q+VVF+MPVKGCKT+DNVTV+I++A+VFRIMGD
Sbjct: 38 PWFSVPDGCYALVTRFGKDLMYEGDNPVWPAGFFWGPPWTKVSNIVTKQSVVFNMPVKGCKTQDNVTVQINLAVVFRIMGD 118
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A7S4JLX9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JLX9_9STRA) HSP 1 Score: 111 bits (277), Expect = 7.200e-27 Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 1
Query: 7 FTIPQGCYALVTEHGADVDYV----TGQAVWPPGLHWGL--FFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
FT+P GCYALVTEHGAD+DYV A WP GLH+ + VS+LVT+Q+VV DMPVK C+T+DNV V +DVA+VFRIMGD
Sbjct: 48 FTVPSGCYALVTEHGADLDYVDDDENASAAWPAGLHYPYPPWVRVSHLVTKQSVVLDMPVKACRTRDNVAVNVDVALVFRIMGD 131
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Match: A0A7S4UKA1_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UKA1_9STRA) HSP 1 Score: 108 bits (270), Expect = 5.390e-26 Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = 1
Query: 4 WFTIPQGCYALVTEHGADVDYVTGQAVWPPGLHWGL-FFAVSNLVTQQNVVFDMPVKGCKTKDNVTVEIDVAIVFRIMGD 240
+FTIP+G YALVT HGA VD+ G VWP GLH+G + VS+LVT+Q++VF+ PVKGCKTKDNVTV ID+ IVFR+MGD
Sbjct: 48 FFTIPEGFYALVTRHGARVDF-NGSPVWPSGLHFGPPWLKVSHLVTKQSMVFNTPVKGCKTKDNVTVAIDMGIVFRVMGD 126 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130473.2213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig130473.2213.1 >prot_H-elongata_contig130473.2213.1 ID=prot_H-elongata_contig130473.2213.1|Name=mRNA_H-elongata_contig130473.2213.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp PWFTIPQGCYALVTEHGADVDYVTGQAVWPPGLHWGLFFAVSNLVTQQNVback to top mRNA from alignment at H-elongata_contig130473:1158..1824+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig130473.2213.1 ID=mRNA_H-elongata_contig130473.2213.1|Name=mRNA_H-elongata_contig130473.2213.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=667bp|location=Sequence derived from alignment at H-elongata_contig130473:1158..1824+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig130473:1158..1824+ >mRNA_H-elongata_contig130473.2213.1 ID=mRNA_H-elongata_contig130473.2213.1|Name=mRNA_H-elongata_contig130473.2213.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig130473:1158..1824+ (Himanthalia elongata Himel1 dioecious)back to top |