mRNA_H-elongata_contig130452.2212.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130452.2212.1
Unique NamemRNA_H-elongata_contig130452.2212.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130452.2212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130452contigH-elongata_contig130452:428..1050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size623
Cds size576
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929775.3442526-CDS-H-elongata_contig130452:427..10031622929775.3442526-CDS-H-elongata_contig130452:427..1003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130452 428..1003 +
1691679153.0493004-CDS-H-elongata_contig130452:427..10031691679153.0493004-CDS-H-elongata_contig130452:427..1003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130452 428..1003 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929775.3586977-UTR-H-elongata_contig130452:1003..10501622929775.3586977-UTR-H-elongata_contig130452:1003..1050Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130452 1004..1050 +
1691679153.0612667-UTR-H-elongata_contig130452:1003..10501691679153.0612667-UTR-H-elongata_contig130452:1003..1050Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130452 1004..1050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130452.2212.1prot_H-elongata_contig130452.2212.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130452 428..1003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130452.2212.1

>prot_H-elongata_contig130452.2212.1 ID=prot_H-elongata_contig130452.2212.1|Name=mRNA_H-elongata_contig130452.2212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp
KRAVVAKQETAVAAEEVTRTVVAKEEINGTEEKGTRVVADEGGQETNEPE
NSGEDGKLQPENIQDGIGQELTSPVHPEQTRAAEPEPHPLEERELGGQPE
ERSDPRRAEELRPPSTPESQHQFDPTSTATGLKTPKKSFLRPEKKHSSSE
TKSKTLWRSLFSLAEQLTSLPKQKKATPRGAQYKQFDPGGG*
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mRNA from alignment at H-elongata_contig130452:428..1050+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130452.2212.1 ID=mRNA_H-elongata_contig130452.2212.1|Name=mRNA_H-elongata_contig130452.2212.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=623bp|location=Sequence derived from alignment at H-elongata_contig130452:428..1050+ (Himanthalia elongata Himel1 dioecious)
AAAAGGGCTGTTGTGGCAAAGCAGGAAACAGCGGTCGCAGCAGAGGAGGT
AACCAGGACTGTCGTGGCCAAGGAAGAAATTAATGGGACGGAAGAAAAAG
GGACCAGGGTGGTCGCCGATGAAGGAGGACAAGAAACGAATGAGCCGGAA
AACTCAGGGGAAGATGGAAAGCTCCAACCAGAAAACATCCAAGATGGAAT
TGGTCAAGAACTGACTTCGCCCGTTCATCCAGAGCAAACAAGAGCGGCAG
AACCAGAACCGCATCCTCTAGAAGAACGAGAGCTGGGAGGACAGCCCGAA
GAGCGCTCCGACCCAAGACGAGCTGAAGAACTCAGACCACCATCGACCCC
CGAGAGCCAGCACCAGTTCGATCCAACATCAACGGCAACAGGGCTTAAAA
CGCCTAAAAAGTCATTTCTCCGCCCGGAAAAGAAACATTCGAGCTCGGAG
ACCAAGAGCAAAACTTTGTGGAGAAGCCTATTCTCCCTGGCAGAGCAACT
TACGAGCTTGCCAAAACAAAAGAAGGCAACACCTAGAGGAGCACAATACA
AGCAGTTTGACCCCGGAGGCGGATGAGTGAGGAGGAGCCGGGGGGGCTGT
ATGTTTCTTTTTGTATGCCCTCT
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Coding sequence (CDS) from alignment at H-elongata_contig130452:428..1050+

>mRNA_H-elongata_contig130452.2212.1 ID=mRNA_H-elongata_contig130452.2212.1|Name=mRNA_H-elongata_contig130452.2212.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig130452:428..1050+ (Himanthalia elongata Himel1 dioecious)
AAAAGGGCTGTTGTGGCAAAGCAGGAAACAGCGGTCGCAGCAGAGGAGGT
AACCAGGACTGTCGTGGCCAAGGAAGAAATTAATGGGACGGAAGAAAAAG
GGACCAGGGTGGTCGCCGATGAAGGAGGACAAGAAACGAATGAGCCGGAA
AACTCAGGGGAAGATGGAAAGCTCCAACCAGAAAACATCCAAGATGGAAT
TGGTCAAGAACTGACTTCGCCCGTTCATCCAGAGCAAACAAGAGCGGCAG
AACCAGAACCGCATCCTCTAGAAGAACGAGAGCTGGGAGGACAGCCCGAA
GAGCGCTCCGACCCAAGACGAGCTGAAGAACTCAGACCACCATCGACCCC
CGAGAGCCAGCACCAGTTCGATCCAACATCAACGGCAACAGGGCTTAAAA
CGCCTAAAAAGTCATTTCTCCGCCCGGAAAAGAAACATTCGAGCTCGGAG
ACCAAGAGCAAAACTTTGTGGAGAAGCCTATTCTCCCTGGCAGAGCAACT
TACGAGCTTGCCAAAACAAAAGAAGGCAACACCTAGAGGAGCACAATACA
AGCAGTTTGACCCCGGAGGCGGATGAAAAAGGGCTGTTGTGGCAAAGCAG
GAAACAGCGGTCGCAGCAGAGGAGGTAACCAGGACTGTCGTGGCCAAGGA
AGAAATTAATGGGACGGAAGAAAAAGGGACCAGGGTGGTCGCCGATGAAG
GAGGACAAGAAACGAATGAGCCGGAAAACTCAGGGGAAGATGGAAAGCTC
CAACCAGAAAACATCCAAGATGGAATTGGTCAAGAACTGACTTCGCCCGT
TCATCCAGAGCAAACAAGAGCGGCAGAACCAGAACCGCATCCTCTAGAAG
AACGAGAGCTGGGAGGACAGCCCGAAGAGCGCTCCGACCCAAGACGAGCT
GAAGAACTCAGACCACCATCGACCCCCGAGAGCCAGCACCAGTTCGATCC
AACATCAACGGCAACAGGGCTTAAAACGCCTAAAAAGTCATTTCTCCGCC
CGGAAAAGAAACATTCGAGCTCGGAGACCAAGAGCAAAACTTTGTGGAGA
AGCCTATTCTCCCTGGCAGAGCAACTTACGAGCTTGCCAAAACAAAAGAA
GGCAACACCTAGAGGAGCACAATACAAGCAGTTTGACCCCGGAGGCGGAT
GA
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