prot_H-elongata_contig13044.2211.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13044.2211.1
Unique Nameprot_H-elongata_contig13044.2211.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length214
Homology
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BLAST of mRNA_H-elongata_contig13044.2211.1 vs. uniprot
Match: D8LEB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB3_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 6.210e-24
Identity = 55/93 (59.14%), Postives = 70/93 (75.27%), Query Frame = 0 
Query:    1 VRQSAKLSGQQYYEPDEKKSILATPDVRPRKWRQAEVAVGYFKIRKWIPKDQQNLTAELHGGLTDPADVAAAAKHQLNFRIGKSSSRLKNRTR 93
            VRQSAK +   YY PDEK S+ +TP VRPR WR A+VA GYF +++W+P+DQQ+LTA LHGGLTDPA++AAA K  L     K+S+R K+R R
Sbjct:   10 VRQSAKHAST-YYIPDEKNSLFSTPGVRPRGWRTADVAAGYFTVKRWMPRDQQHLTAGLHGGLTDPAEIAAA-KQSLRAN-SKASTRFKSRNR 99
[Close]
BLAST of mRNA_H-elongata_contig13044.2211.1 vs. uniprot
Match: A0A835ZBY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.200e-11
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 0 
Query:    1 VRQSAKLSGQQYYE-PDEKKSILATPDVRPRKWRQAEVAVGYFKIRKWIPKDQQNLTAELHGGLTDPADVAAAAKHQLNFRIGKSSSRLKNR 91
            VRQSA+   + Y +   E+ S+LA  D+R R+W++ EV +G FK++KW+PK QQ+LTAELH    D       +K +L  RI  S   L++R
Sbjct:   13 VRQSARGGTETYNDFIVEEASVLAFKDIRAREWQKVEVQLGTFKVKKWVPKSQQHLTAELHEHKADTGHRLKKSK-RLKGRIPPSKRGLRSR 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13044.2211.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEB3_ECTSI6.210e-2459.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZBY9_9STRA5.200e-1142.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13044contigH-elongata_contig13044:2129..3984 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13044.2211.1mRNA_H-elongata_contig13044.2211.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13044 2129..4579 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13044.2211.1 ID=prot_H-elongata_contig13044.2211.1|Name=mRNA_H-elongata_contig13044.2211.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp
VRQSAKLSGQQYYEPDEKKSILATPDVRPRKWRQAEVAVGYFKIRKWIPK
DQQNLTAELHGGLTDPADVAAAAKHQLNFRIGKSSSRLKNRTRAAAAAAA
AVPGGTPSRSQAITTASRVGGRTSPVGSFGAASPPWDASQSPPPGPSPPN
IPTSSMSPGGMPYTGAMTVGSSSSSKPFSAQGVDKRRDLGDIRTLAGIGG
AVPCDPPSHLMEK*
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