mRNA_H-elongata_contig130406.2208.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130406.2208.1
Unique NamemRNA_H-elongata_contig130406.2208.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: D7FPJ6_ECTSI (DUF667 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ6_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 7.180e-67
Identity = 123/246 (50.00%), Postives = 153/246 (62.20%), Query Frame = 1
Query:    1 EYKVIQEGNEVTVFDDEELGIQVMQLLGQRCSVSFPCSSILRHLCLHVKAS*LTGVYAR*I*ASQS*-------------------------------FMVTVVLI*KYMCSFKTSEHP--PF*LRGTNLSSPSLVLFYYCY*TLEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRGGWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRVI 639
            E +V+QEGNE +VFDDEELG+QV++LLG+RC V+FPCSSILR+LCLHVK +    V    +   Q                                 F   +     ++ +  T+     P     TN+  P   L      TL+K+FSFEVEIVD+TK+YRYID+SN RS ADIG DRA LPL+L  GWQ VNIDLE  VR VFG+SYLT SQ+T+RASAR+AK+FFQS+ FSDYELP HLRV+
Sbjct:   63 ECEVLQEGNEASVFDDEELGVQVVELLGRRCGVAFPCSSILRYLCLHVKVTQFLRVIHSIVSGKQKDGCCRARETTCATAARVPRFHFFDQHQRISVRFCSELACCNVWLQTLVTTRRRFVPNTSSSTNMRLPKPRLRPDFLQTLDKFFSFEVEIVDDTKRYRYIDISNTRSVADIGDDRALLPLKLEDGWQRVNIDLERTVRLVFGSSYLTTSQVTVRASARVAKLFFQSQPFSDYELPSHLRVV 308          
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: A0A7S1TVV2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVV2_9STRA)

HSP 1 Score: 100 bits (249), Expect = 6.880e-23
Identity = 65/205 (31.71%), Postives = 92/205 (44.88%), Query Frame = 1
Query:   25 NEVTVFDDEELGIQVMQLLGQRCSVSFPCSSILRHLCLHVKAS*LTGVYAR*I*ASQS*FMVTVVLI*KYMCSFKTSEHPPF*LRGTNLSSPSLVLFYYCY*TLEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRGGWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRVI 639
            NE  V +DEELG +V++L+G    +  P SSIL  L LHVK              S S F                                    F+ C           ++ VDNTK+YR   +SN +S   +    A LPL +  GWQ +  ++E++  + FG+ YLT  Q+ +R S  ++K FFQ   +SD ELP HLRV+
Sbjct:   44 NEAEVVEDEELGKEVIELMGLEAELVLPTSSILPMLVLHVK--------------STSHF------------------------------------FWIC-----------IDFVDNTKKYRTFTISNKQSIVSVDETEAKLPLIIDEGWQRLCFNVEELTAKAFGSKYLTTYQVRVRGSVCVSKAFFQGHDYSDAELPSHLRVL 187          
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: A0A6G1S9M0_9ACAR (UPF0468 protein C16orf80 n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1S9M0_9ACAR)

HSP 1 Score: 90.5 bits (223), Expect = 5.660e-19
Identity = 37/101 (36.63%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  334 LEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRGGWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRV 636
            L+++F+FE+EI+D+TK  R    SN ++   +      +PL+L  GW H+N++L D  RR +GT+Y+  S+IT+ A+ R+ +++F   Q++D ELP   ++
Sbjct:   82 LDRFFTFEIEIIDDTKAKRRFRASNYQTRTRVKDFICTMPLKLESGWNHINLNLADFTRRAYGTNYVETSRITVNANCRLRRIYFADRQYTDEELPAEFKL 182          
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: A0A1V9YI48_9STRA (DUF667 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YI48_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 6.610e-19
Identity = 40/103 (38.83%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  334 LEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRGGWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRVID 642
            L+ +F+FE+E++D  K+YR + ++NARS A +      +PL    GWQ+  +DL+ +V   FGT ++   Q+ L AS R+ +VFFQ  ++S  ELP  L ++D
Sbjct:  101 LDAFFTFEIEVLDEKKEYRTLTITNARSLARVNASHVQMPLAFGKGWQYFYVDLQSVVHDAFGTQHVATVQLRLMASCRLLRVFFQDVKYSYAELPLDLAILD 203          
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: A0A5D6Y0V0_9STRA (DUF667 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0V0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.720e-17
Identity = 43/115 (37.39%), Postives = 74/115 (64.35%), Query Frame = 1
Query:  304 LVLFYYCY*TLEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRG---GWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRVI 639
            LVLF     +L+++F+F++E++D+ +QYR + V+NARS A +      LPL   G   GW+++ +DL+ +  + FGT ++T + + +  + R+ +VFFQ E +SD ELP HL  +
Sbjct:  118 LVLFVK---SLDQFFAFQLEVLDDKQQYRTLKVTNARSLARVEGASVQLPLAFGGPGGGWRYLCMDLQQLTAQAFGTQHVTTTHVRIGGNCRLLRVFFQDELYSDAELPAHLTFL 229          
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: W4G477_9STRA (DUF667 domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G477_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 9.040e-17
Identity = 45/115 (39.13%), Postives = 70/115 (60.87%), Query Frame = 1
Query:  304 LVLFYYCY*TLEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLEL-RGG-WQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRVID 642
            LVLF      L+ YF+ ++E+VD+TK YR   ++N+RS A +      +PL   +GG W+HV +D+  M    FGT ++   Q+T+ A+ R+ +VFFQ   +SD ELP  L ++D
Sbjct:   86 LVLFVK---NLDAYFALDIEVVDDTKTYRTFHITNSRSLARVQASACQMPLVFGKGGTWRHVCLDVHRMCLDAFGTHHVATVQVTVHATCRLLRVFFQDVDYSDAELPPMLALLD 197          
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: A0A7R9PRD5_TIMGE (Hypothetical protein n=3 Tax=Timema TaxID=61471 RepID=A0A7R9PRD5_TIMGE)

HSP 1 Score: 84.3 bits (207), Expect = 2.850e-16
Identity = 37/120 (30.83%), Postives = 73/120 (60.83%), Query Frame = 1
Query:  277 RGTNLSSPSLVLFYYCY*TLEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRGGWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRV 636
            +   ++ P LV+       L+KYF+F+V+++D+    R +  SN RST ++  D   +PL L  GW  V ++L+D+++R +G+SY+  +++ + A+ R+ +V+F    + D ++P  LR+
Sbjct:   92 KSLAITLPYLVILLK---NLKKYFTFQVDVLDDAGATRKLRASNFRSTVEVTPDLCHMPLRLELGWNQVTLNLDDLMKRAYGSSYVETTRLQINANCRLRRVYFMDRLYRDEDVPADLRL 208          
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: A0A7R9DSI4_TIMCR (Hypothetical protein n=1 Tax=Timema cristinae TaxID=61476 RepID=A0A7R9DSI4_TIMCR)

HSP 1 Score: 82.8 bits (203), Expect = 2.930e-16
Identity = 34/101 (33.66%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  334 LEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRGGWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRV 636
            L+KYF+F+V+I+D+  + R +  SN RST ++  D   +PL L  GW  V ++L+D++RR +G+SY+   ++ + A+ R+ +V+F    + + ++P   R+
Sbjct:   39 LKKYFTFQVDILDDVGEIRKMRASNFRSTVEVTPDLCHMPLRLEVGWNQVTLNLDDLMRRAYGSSYVETIRLQINANCRLRRVYFMDRLYREEDVPADFRL 139          
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: A0A8D3B209_SCOMX (DUF667 domain-containing protein n=6 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3B209_SCOMX)

HSP 1 Score: 82.8 bits (203), Expect = 5.360e-16
Identity = 36/102 (35.29%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  334 LEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRGGWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRVI 639
            L+KYF+FEV+++D+    R    SN +ST  +      +P+ L  GW H+  +L D  RR +GT+Y+   ++ + A+ RI +VFF    +S+ ELP   ++I
Sbjct:   83 LKKYFTFEVQVLDDKNVRRRFQASNYQSTTRVSPFMCTIPMRLDEGWSHIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVFFSDRLYSEDELPAGFKLI 184          
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Match: A0A8D3C337_SCOMX (DUF667 domain-containing protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3C337_SCOMX)

HSP 1 Score: 82.8 bits (203), Expect = 7.070e-16
Identity = 36/102 (35.29%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  334 LEKYFSFEVEIVDNTKQYRYIDVSNARSTADIGCDRAFLPLELRGGWQHVNIDLEDMVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRVI 639
            L+KYF+FEV+++D+    R    SN +ST  +      +P+ L  GW H+  +L D  RR +GT+Y+   ++ + A+ RI +VFF    +S+ ELP   ++I
Sbjct:   83 LKKYFTFEVQVLDDKNVRRRFQASNYQSTTRVSPFMCTIPMRLDEGWSHIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVFFSDRLYSEDELPAGFKLI 184          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130406.2208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPJ6_ECTSI7.180e-6750.00DUF667 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S1TVV2_9STRA6.880e-2331.71Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A6G1S9M0_9ACAR5.660e-1936.63UPF0468 protein C16orf80 n=1 Tax=Aceria tosichella... [more]
A0A1V9YI48_9STRA6.610e-1938.83DUF667 domain-containing protein n=1 Tax=Thraustot... [more]
A0A5D6Y0V0_9STRA1.720e-1737.39DUF667 domain-containing protein n=1 Tax=Pythium b... [more]
W4G477_9STRA9.040e-1739.13DUF667 domain-containing protein n=4 Tax=Aphanomyc... [more]
A0A7R9PRD5_TIMGE2.850e-1630.83Hypothetical protein n=3 Tax=Timema TaxID=61471 Re... [more]
A0A7R9DSI4_TIMCR2.930e-1633.66Hypothetical protein n=1 Tax=Timema cristinae TaxI... [more]
A0A8D3B209_SCOMX5.360e-1635.29DUF667 domain-containing protein n=6 Tax=Scophthal... [more]
A0A8D3C337_SCOMX7.070e-1635.29DUF667 domain-containing protein n=1 Tax=Scophthal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130406contigH-elongata_contig130406:78..1180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue6e-12
Seed eggNOG ortholog2880.D7FPJ6
EggNOG free text desc.regulation of cilium movement involved in cell motility
EggNOG OGsKOG3213@1,KOG3213@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionCilia/flagella-associated protein 20
Ec32 orthologEc-12_000830.1
Exons2
Model size648
Cds size147
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130406.2208.1prot_H-elongata_contig130406.2208.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130406 1034..1180 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929775.0012822-UTR-H-elongata_contig130406:77..4811622929775.0012822-UTR-H-elongata_contig130406:77..481Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130406 78..481 +
1691679152.9373124-UTR-H-elongata_contig130406:77..4811691679152.9373124-UTR-H-elongata_contig130406:77..481Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130406 78..481 +
1622929775.0154867-UTR-H-elongata_contig130406:936..10331622929775.0154867-UTR-H-elongata_contig130406:936..1033Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130406 937..1033 +
1691679152.947962-UTR-H-elongata_contig130406:936..10331691679152.947962-UTR-H-elongata_contig130406:936..1033Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130406 937..1033 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929775.029483-CDS-H-elongata_contig130406:1033..11801622929775.029483-CDS-H-elongata_contig130406:1033..1180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130406 1034..1180 +
1691679152.9585063-CDS-H-elongata_contig130406:1033..11801691679152.9585063-CDS-H-elongata_contig130406:1033..1180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130406 1034..1180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130406.2208.1

>prot_H-elongata_contig130406.2208.1 ID=prot_H-elongata_contig130406.2208.1|Name=mRNA_H-elongata_contig130406.2208.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MVRRVFGTSYLTASQITLRASARIAKVFFQSEQFSDYELPGHLRVIDK*
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mRNA from alignment at H-elongata_contig130406:78..1180+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130406.2208.1 ID=mRNA_H-elongata_contig130406.2208.1|Name=mRNA_H-elongata_contig130406.2208.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1103bp|location=Sequence derived from alignment at H-elongata_contig130406:78..1180+ (Himanthalia elongata Himel1 dioecious)
GAGTACAAGGTTATACAAGAGGGCAACGAGGTGACTGTCTTCGATGACGA AGAGCTCGGGATCCAAGTCATGCAGCTGCTGGGTCAGCGATGCTCTGTAT CATTTCCATGTAGCTCTATTTTACGACACCTGTGCCTCCACGTCAAGGCA AGTTGACTAACAGGCGTGTACGCGCGATAAATTTGAGCCTCCCAGTCTTA ATTTATGGTTACCGTTGTTTTAATATAAAAATATATGTGCTCATTCAAAA CCTCCGAACATCCACCCTTCTAATTACGAGGTACTAACCTTTCGTCACCT TCGCTGGTTCTCTTCTATTACTGTTATTAGACGCTGGAGAAGTACTTTTC TTTTGAGGTGGAGATCGTCGACAACACTAAACAGTATCGATACATCGACG TCAGGTAGGATACCATACGAACCTAGAAATCTTCCCCTCTCCCATAAGCT TTTCTCCACAAGTGCAGCACTCGTTTTTTTTTCACCTAGCCTTGCGGCGT TGAAGGTATCTTATCAATCTCCCCGAAAACCTTCGCAAAATTTACTTGAC TGGACCAATTTCTTTGGATTTGTTCGACGCAAAAAGAAACGGGGGGTAAG AGGTATCATCCTCGTACCCACCCAACGGGGAGAACGAACGAAGGCGCGCA TCTCGTATCATGGCTTCATCACATGTATCATGATAATAAGGGAGATATGG TGCTCAGTTCGACTTTTCAAATCGTCAAGACAGCTTGCCGTTCTTTGCAT GCTTTAATTACCGACCCCTCTCCCCCAACCCACTGTGCCCATATTATCTC CCGTACCACGGATATATATCGGCGCCACCTTCATCGATCGGCAACGCTTG TCCGCGCAGCAACGCCCGGAGCACTGCAGACATCGGCTGTGATCGCGCCT TTCTTCCCCTCGAGCTTCGAGGGGGCTGGCAGCACGTCAACATCGACCTC GAGGACATGGTGCGCCGCGTATTCGGCACCTCCTACTTAACAGCCTCGCA GATTACACTCCGGGCAAGCGCGCGAATTGCAAAGGTTTTCTTCCAGAGCG AGCAATTTTCCGACTACGAGCTTCCTGGCCACCTCCGAGTGATCGACAAA TGA
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Coding sequence (CDS) from alignment at H-elongata_contig130406:78..1180+

>mRNA_H-elongata_contig130406.2208.1 ID=mRNA_H-elongata_contig130406.2208.1|Name=mRNA_H-elongata_contig130406.2208.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig130406:78..1180+ (Himanthalia elongata Himel1 dioecious)
ATGGTGCGCCGCGTATTCGGCACCTCCTACTTAACAGCCTCGCAGATTAC
ACTCCGGGCAAGCGCGCGAATTGCAAAGGTTTTCTTCCAGAGCGAGCAAT
TTTCCGACTACGAGCTTCCTGGCCACCTCCGAGTGATCGACAAATGAATG
GTGCGCCGCGTATTCGGCACCTCCTACTTAACAGCCTCGCAGATTACACT
CCGGGCAAGCGCGCGAATTGCAAAGGTTTTCTTCCAGAGCGAGCAATTTT
CCGACTACGAGCTTCCTGGCCACCTCCGAGTGATCGACAAATGA
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