mRNA_H-elongata_contig130405.2207.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig130405.2207.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 3.610e-20 Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1
Query: 4 RTWQVHPGYLAANAPLRHVSTSSAGTHVAVAGARGLAVYSRPTNRWRLFGNIHQ 165
R VHPGYL++NAPLRHVSTS AGT+VAVAG+RG AVYSRPTNRWRLFGNI Q
Sbjct: 725 RVLPVHPGYLSSNAPLRHVSTSRAGTYVAVAGSRGFAVYSRPTNRWRLFGNIEQ 778
BLAST of mRNA_H-elongata_contig130405.2207.1 vs. uniprot
Match: A0A2V0P0B4_9CHLO (RIC1 domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P0B4_9CHLO) HSP 1 Score: 62.4 bits (150), Expect = 1.780e-9 Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 1
Query: 28 YLAANAPLRHVSTSSAGTHVAVAGARGLAVYSRPTNRWRLFGNIHQ 165
YLAAN PL H + S +G VAV+G RGLAVYSR T RWRLFGN+ Q
Sbjct: 616 YLAANWPLVHAAASPSGGDVAVSGRRGLAVYSRRTERWRLFGNVSQ 661
BLAST of mRNA_H-elongata_contig130405.2207.1 vs. uniprot
Match: A0A4D9CZK3_9STRA (RIC1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZK3_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 2.430e-9 Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1
Query: 16 VHPGYLAANAPLRHVSTSSAGTHVAVAGARGLAVYSRPTNRWRLFGNIHQVMCKAQLARFLKCGKTGSVSLDHLWAK 246
V P Y + N P+ V+ S +G +AVAG RGLA+YSRP RWRLFGN+HQ + ++A G+ V + LW++
Sbjct: 545 VPPAY-SVNVPVTLVAQSPSGQQLAVAGKRGLALYSRPQRRWRLFGNVHQER-ELEVAGMTWWGEDAVVVVAKLWSR 619
BLAST of mRNA_H-elongata_contig130405.2207.1 vs. uniprot
Match: A0A250X4W9_9CHLO (RIC1 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X4W9_9CHLO) HSP 1 Score: 61.2 bits (147), Expect = 4.530e-9 Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 28 YLAANAPLRHVSTSSAGTHVAVAGARGLAVYSRPTNRWRLFGNIHQ---VMCKA 180
Y+ N PL H S S+ G H+AVAG RGLA+YSR N+WRLFG++ Q + C+A
Sbjct: 604 YIGPNWPLLHTSVSTNGLHIAVAGLRGLALYSRAANKWRLFGDVSQERKIWCQA 657
BLAST of mRNA_H-elongata_contig130405.2207.1 vs. uniprot
Match: A0A8J4C0E2_9CHLO (RIC1 domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C0E2_9CHLO) HSP 1 Score: 60.8 bits (146), Expect = 6.200e-9 Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 28 YLAANAPLRHVSTSSAGTHVAVAGARGLAVYSRPTNRWRLFGNI---HQVMCKA 180
Y++AN PL+ + S++GT +AVAG GLAVY+RP+ RWRLFG+I QV C+A
Sbjct: 567 YVSANWPLQRSAISASGTDIAVAGRNGLAVYNRPSERWRLFGDISQERQVSCRA 620
BLAST of mRNA_H-elongata_contig130405.2207.1 vs. uniprot
Match: A0A7S3VNY5_DUNTE (Hypothetical protein (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VNY5_DUNTE) HSP 1 Score: 60.1 bits (144), Expect = 1.140e-8 Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 1
Query: 28 YLAANAPLRHVSTSSAGTHVAVAGARGLAVYSRPTNRWRLFGNIHQ 165
Y+A+N P+ HV+ SS+G +AVAG RGLA+YSR T+RWRLFG++ Q
Sbjct: 165 YIASNWPVVHVAVSSSGIDMAVAGQRGLALYSRLTDRWRLFGDVSQ 210
BLAST of mRNA_H-elongata_contig130405.2207.1 vs. uniprot
Match: A0A7S1T8D7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T8D7_9CHLO) HSP 1 Score: 56.2 bits (134), Expect = 3.080e-8 Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 4 RTWQVHPGYLAANAPLRHVSTSSAGTHVAVAGARGLAVYSRPTNRWRLFGNIHQ 165
R +V Y+A+N PL H + S+ G +A AG RGLA+YSR + RWRLFG++ Q
Sbjct: 65 RHLRVPSAYMASNWPLVHAAVSADGYDIAAAGTRGLALYSRRSGRWRLFGDVSQ 118
BLAST of mRNA_H-elongata_contig130405.2207.1 vs. uniprot
Match: A0A0D2LPC2_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LPC2_9CHLO) HSP 1 Score: 57.0 bits (136), Expect = 8.550e-8 Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1
Query: 25 GYLAANAPLRHVSTSSAGTHVAVAGARGLAVYSRPTNRWRLFGNIHQ 165
GY+AA PL H + S++G VAV+G RGLAVY R RWRLFG++ Q
Sbjct: 87 GYVAAGWPLVHAAASASGADVAVSGRRGLAVYGRHAERWRLFGDVTQ 133
BLAST of mRNA_H-elongata_contig130405.2207.1 vs. uniprot
Match: A0A8J9RCC0_9CHLO (Probable RAB6A-GEF complex partner protein 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RCC0_9CHLO) HSP 1 Score: 56.2 bits (134), Expect = 2.630e-7 Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1
Query: 13 QVHPGYLAANAPLRHVSTSSAGTHVAVAGARGLAVYSRPTNRWRLFGNIHQ 165
Q+ YLAAN PL H + S+ G +AVAG GLA+YSR + RWRLFG++ Q
Sbjct: 520 QLPAPYLAANWPLLHAALSADGMDIAVAGRHGLALYSRRSARWRLFGDVSQ 570
BLAST of mRNA_H-elongata_contig130405.2207.1 vs. uniprot
Match: A0A7R9VWZ3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VWZ3_9CHLO) HSP 1 Score: 54.7 bits (130), Expect = 6.010e-7 Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 28 YLAANAPLRHVSTSSAGTHVAVAGARGLAVYSRPTNRWRLFGNIHQ---VMCKA 180
YLA N PL + S G VAVA RGLA+YSR +NRWRLFG++ Q V C+A
Sbjct: 48 YLAPNWPLVRTAVSPNGMDVAVAAQRGLALYSRASNRWRLFGDVSQERLVSCQA 101 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130405.2207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig130405.2207.1 >prot_H-elongata_contig130405.2207.1 ID=prot_H-elongata_contig130405.2207.1|Name=mRNA_H-elongata_contig130405.2207.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp ARTWQVHPGYLAANAPLRHVSTSSAGTHVAVAGARGLAVYSRPTNRWRLFback to top mRNA from alignment at H-elongata_contig130405:1271..1516- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig130405.2207.1 ID=mRNA_H-elongata_contig130405.2207.1|Name=mRNA_H-elongata_contig130405.2207.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig130405:1271..1516- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig130405:1271..1516- >mRNA_H-elongata_contig130405.2207.1 ID=mRNA_H-elongata_contig130405.2207.1|Name=mRNA_H-elongata_contig130405.2207.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig130405:1271..1516- (Himanthalia elongata Himel1 dioecious)back to top |