mRNA_H-elongata_contig130357.2206.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130357.2206.1
Unique NamemRNA_H-elongata_contig130357.2206.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig130357.2206.1 vs. uniprot
Match: A0A6H5LJJ9_9PHAE (UmuC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJJ9_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.960e-39
Identity = 72/96 (75.00%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 QVRNPSLAGKAVAVVQYPTTMHDMKDMTPDDDRIVEGSASSIIAVSYEARAFGVKRIMKGGEARKVCPELSLVQVPTRNSKADISLYRCVHASRRV 288
            Q+R+ +L G+ V VVQYPT+ HD+KDM PDD+R+VEGSASSIIAVSYEAR FGVKR MK G+ARKVCPEL+LVQVPTRN KADISLYR  HA  RV
Sbjct:   60 QLRDAALTGRPVVVVQYPTSNHDIKDMEPDDNRVVEGSASSIIAVSYEARPFGVKRGMKAGDARKVCPELALVQVPTRNGKADISLYR--HAGERV 153
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BLAST of mRNA_H-elongata_contig130357.2206.1 vs. uniprot
Match: D7FT49_ECTSI (Translesion synthesis DNA polymerase eta splice variant n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT49_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 3.120e-37
Identity = 72/96 (75.00%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    1 QVRNPSLAGKAVAVVQYPTTMHDMKDMTPDDDRIVEGSASSIIAVSYEARAFGVKRIMKGGEARKVCPELSLVQVPTRNSKADISLYRCVHASRRV 288
            Q+R+ +L G+ V VVQYPT+ HD+KDM PDD+R+VEGSASSIIAVSYEAR FGVKR MK G+ARKVCPELSLVQVPTRN KADIS YR  HA  RV
Sbjct:   60 QLRDAALTGRPVVVVQYPTSNHDIKDMAPDDNRVVEGSASSIIAVSYEARPFGVKRGMKAGDARKVCPELSLVQVPTRNGKADISFYR--HAGERV 153
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BLAST of mRNA_H-elongata_contig130357.2206.1 vs. uniprot
Match: A0A7S3H017_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H017_9STRA)

HSP 1 Score: 100 bits (249), Expect = 5.880e-25
Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:   10 NPSLAGKAVAVVQYPTTMHDMKDMTPDDDRIVEGSASSIIAVSYEARAFGVKRIMKGGEARKVCPELSLVQVPTRNSKADISLYR 264
            NPSL GKAV V QY     D+K   P+D+RIV  ++ S+IAVSYEARA GVKR M+G EA+KVCPE+ LVQVPT + KAD+++YR
Sbjct:   42 NPSLKGKAVGVAQY-NPFGDLKSFAPEDNRIV--NSGSLIAVSYEARARGVKRNMRGAEAKKVCPEMLLVQVPTSHGKADLTIYR 123
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BLAST of mRNA_H-elongata_contig130357.2206.1 vs. uniprot
Match: A0A7S1NH26_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NH26_9EUGL)

HSP 1 Score: 102 bits (253), Expect = 2.220e-23
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:    7 RNPSLAGKAVAVVQYPTTMHDMKDMTPDDDRIVEGSASSIIAVSYEARAFGVKRIMKGGEARKVCPELSLVQVPTRNSKADISLYR 264
            R+PSL G+ +AVVQY     D++ + P + RI   S  S+IAVSYEARAFGVKR M+G EAR+ CPEL LVQVPT N KAD+++YR
Sbjct:   37 RDPSLQGQPIAVVQY-NPFGDLRTILPSEPRIFNDSNGSLIAVSYEARAFGVKRNMRGDEARRQCPELQLVQVPTANGKADLTIYR 121
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BLAST of mRNA_H-elongata_contig130357.2206.1 vs. uniprot
Match: A0A5J4XRP8_9CHLO (DNA polymerase eta n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XRP8_9CHLO)

HSP 1 Score: 101 bits (251), Expect = 4.280e-23
Identity = 51/86 (59.30%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:    7 RNPSLAGKAVAVVQYPTTMHDMKDMTPDDDRIVEGSASSIIAVSYEARAFGVKRIMKGGEARKVCPELSLVQVPTRNSKADISLYR 264
            RNP L GK V  VQY     D++ +TPD+ RI   S  S+IAVSYEARA GVKR M+G +ARKVCPE+ LVQVPT + KAD+++YR
Sbjct:   26 RNPDLKGKPVVTVQY-NPFGDLRTITPDEPRIFNDSNGSLIAVSYEARASGVKRGMRGDQARKVCPEVQLVQVPTAHGKADLTVYR 110
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BLAST of mRNA_H-elongata_contig130357.2206.1 vs. uniprot
Match: A0A1D2AE22_AUXPR (UmuC domain-containing protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AE22_AUXPR)

HSP 1 Score: 97.4 bits (241), Expect = 5.390e-23
Identity = 54/95 (56.84%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:    7 RNPS-LAGKAVAVVQYPTTMHDMKDMTPDDDRIVEGSASSIIAVSYEARAFGVKRIMKGGEARKVCPELSLVQVPTRNSKADISLYRCVHASRRV 288
            R+P+ LAGK +AVVQY     D++ + P+DDR++  S +SIIAVSYEARA GV+R M+G EA  +CP+L LVQVPT + KAD++LYR   A RRV
Sbjct:   60 RDPNRLAGKPLAVVQY-NPQGDLRTLLPEDDRVIPASPNSIIAVSYEARAQGVRRNMRGDEACALCPDLILVQVPTAHGKADLTLYRA--AGRRV 151
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BLAST of mRNA_H-elongata_contig130357.2206.1 vs. uniprot
Match: A0A2K3D4A8_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D4A8_CHLRE)

HSP 1 Score: 99.8 bits (247), Expect = 2.340e-22
Identity = 55/88 (62.50%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:    7 RNPSLAGKAVAVVQY-PTTMHDMKD-MTPDDDRIVEGSASSIIAVSYEARAFGVKRIMKGGEARKVCPELSLVQVPTRNSKADISLYR 264
            RNPSL G+ VAVVQY P     +K  + PDD RI   S  SIIAVSYEAR FGVKR M G EARK CP L LVQVPT + KAD+++YR
Sbjct:   35 RNPSLRGRPVAVVQYNPWDTEALKTALRPDDPRIFNDSNGSIIAVSYEARKFGVKRNMSGQEARKACPTLQLVQVPTAHGKADLTIYR 122
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BLAST of mRNA_H-elongata_contig130357.2206.1 vs. uniprot
Match: A0A2P6TXE9_CHLSO (DNA polymerase eta isoform C n=3 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TXE9_CHLSO)

HSP 1 Score: 99.4 bits (246), Expect = 3.220e-22
Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:    1 QVRNPSLAGKAVAVVQYPTTMHDMKDMTPDDDRIVEGSASSIIAVSYEARAFGVKRIMKGGEARKVCPELSLVQVPTRNSKADISLYR 264
            Q RNPSL GK V VVQY      ++   PD++R++  S  S+IAVSYEARA GVKR M+G +ARK CP++ LVQVPT + KAD++LYR
Sbjct: 1918 QQRNPSLRGKPVGVVQY-NPYGSLETRGPDENRLMNDSNGSLIAVSYEARAHGVKRNMRGDDARKACPDIQLVQVPTAHGKADLTLYR 2004
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BLAST of mRNA_H-elongata_contig130357.2206.1 vs. uniprot
Match: L1JQL2_GUITC (UmuC domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQL2_GUITC)

HSP 1 Score: 97.1 bits (240), Expect = 4.500e-22
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 QVRNPSLAGKAVAVVQYPTTMHDMKDMTPDDDRIVEGSASSIIAVSYEARAFGVKRIMKGGEARKVCPELSLVQVPTRNSKADISLYR 264
            Q R+ SL GK VAV+QY     D++D+ PD++R  + S  S+IAVSYEARA GVKRIM+G EAR+ CP+L L+QVP  + K+DI+LYR
Sbjct:   19 QRRDESLRGKPVAVIQY-NPNGDLQDVRPDENRRCDHSDGSLIAVSYEARAKGVKRIMRGKEARQACPDLILIQVPVAHKKSDINLYR 105
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BLAST of mRNA_H-elongata_contig130357.2206.1 vs. uniprot
Match: A0A835Y9U0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y9U0_9CHLO)

HSP 1 Score: 97.8 bits (242), Expect = 1.100e-21
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 QVRNPSLAGKAVAVVQY-PTTMHDMKD-MTPDDDRIVEGSASSIIAVSYEARAFGVKRIMKGGEARKVCPELSLVQVPTRNSKADISLYR 264
            Q RNP+L G+ VAVVQY P     +K  + P+D+RI+  S  SIIAVSYEAR FGVKR M G +ARK+CP L LVQVPT + KAD+++YR
Sbjct:   29 QRRNPALRGQPVAVVQYNPWDTEALKTALRPEDNRILNDSNGSIIAVSYEARKFGVKRNMMGQQARKLCPTLQLVQVPTAHGKADLTIYR 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130357.2206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LJJ9_9PHAE1.960e-3975.00UmuC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FT49_ECTSI3.120e-3775.00Translesion synthesis DNA polymerase eta splice va... [more]
A0A7S3H017_9STRA5.880e-2561.18Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S1NH26_9EUGL2.220e-2359.30Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A5J4XRP8_9CHLO4.280e-2359.30DNA polymerase eta n=1 Tax=Trebouxia sp. A1-2 TaxI... [more]
A0A1D2AE22_AUXPR5.390e-2356.84UmuC domain-containing protein (Fragment) n=1 Tax=... [more]
A0A2K3D4A8_CHLRE2.340e-2262.50Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A2P6TXE9_CHLSO3.220e-2256.82DNA polymerase eta isoform C n=3 Tax=Chlorella sor... [more]
L1JQL2_GUITC4.500e-2256.82UmuC domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835Y9U0_9CHLO1.100e-2158.89Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130357contigH-elongata_contig130357:233..1000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue4.6e-32
Seed eggNOG ortholog2880.D7FT49
Preferred namePOLH
KEGG koko:K03509,ko:K03510
KEGG Pathwayko01524,ko03460,map01524,map03460
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006290,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007275,GO:0007346,GO:0008080,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009790,GO:0009792,GO:0009987,GO:0010224,GO:0010225,GO:0010564,GO:0010948,GO:0016043,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019985,GO:0022402,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035861,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045786,GO:0045787,GO:0045930,GO:0045931,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051276,GO:0051716,GO:0051726,GO:0052858,GO:0060255,GO:0065007,GO:0070013,GO:0070601,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071840,GO:0071897,GO:0071960,GO:0071962,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0097159,GO:0098813,GO:0104004,GO:0140014,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901976,GO:1901977,GO:1903047,GO:1904289,GO:1904290,GO:2000001,GO:2000002,GO:2001020,GO:2001021
EggNOG free text desc.DNA synthesis involved in DNA repair
EggNOG OGsCOG0389@1,KOG2095@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929774.8698504-CDS-H-elongata_contig130357:232..3611622929774.8698504-CDS-H-elongata_contig130357:232..361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130357 233..361 -
1691679152.8872108-CDS-H-elongata_contig130357:232..3611691679152.8872108-CDS-H-elongata_contig130357:232..361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130357 233..361 -
1622929774.882979-CDS-H-elongata_contig130357:841..10001622929774.882979-CDS-H-elongata_contig130357:841..1000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130357 842..1000 -
1691679152.91146-CDS-H-elongata_contig130357:841..10001691679152.91146-CDS-H-elongata_contig130357:841..1000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130357 842..1000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130357.2206.1prot_H-elongata_contig130357.2206.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130357 233..1000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130357.2206.1

>prot_H-elongata_contig130357.2206.1 ID=prot_H-elongata_contig130357.2206.1|Name=mRNA_H-elongata_contig130357.2206.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
QVRNPSLAGKAVAVVQYPTTMHDMKDMTPDDDRIVEGSASSIIAVSYEAR
AFGVKRIMKGGEARKVCPELSLVQVPTRNSKADISLYRCVHASRRV
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mRNA from alignment at H-elongata_contig130357:233..1000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130357.2206.1 ID=mRNA_H-elongata_contig130357.2206.1|Name=mRNA_H-elongata_contig130357.2206.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=768bp|location=Sequence derived from alignment at H-elongata_contig130357:233..1000- (Himanthalia elongata Himel1 dioecious)
CAGGTTCGAAACCCTAGCCTAGCGGGGAAAGCGGTCGCGGTGGTACAGTA
CCCGACCACGATGCATGACATGAAGGACATGACGCCAGACGATGATCGCA
TCGTCGAAGGCTCCGCGAGCTCCATCATCGCCGTCAGCTACGAGGCGCGG
GCATTCGGGGTGAGCAACACTCGTTGTATCTAAAGAGCATGTAAGCCTCG
TTGTGCCTTGAGCAGGCAAGGGCCAGCTCTAGATGCTTTGAAATGGTCGG
TGCCGCGCTACAGTAGGAAGTATGTACGCACAGTAGTAGTGTAGAAGTGC
TGACGATGTGCCCGGTGGTCTAGGAGAAGACTAGAACGATCAAAGCATCA
ACGCCTCGCACGGCTTCGATCGCGCCGTTGGCCTTTCGCGGGTTGGAAGC
GGGAGTGGAATGGAGATTATGCTGCTGCTTTCCGTGTGCGGTGTTCACTC
TCGACATCGCTGGATGAACATAGAAGGAATGTTACTGCTACTGTCATATG
GATCTCCACCCTCTACCAGAACCCCCCTCCCCCCCCCACCCTTTTTTCCC
CCCTTCTTGTCGTTGGTTCTTCTCCCTCCCTCCACTCGCCATACCGTGTC
GTTTCGTTTTGTTTCTCGTGCCGTTTCATGCGCTCTAAGGTGAAACGCAT
CATGAAGGGCGGCGAGGCCAGGAAGGTGTGTCCGGAGTTGTCCCTGGTGC
AGGTGCCCACCCGGAACAGCAAGGCCGACATCTCCTTGTACAGGTGTGTG
CACGCGTCACGTCGGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig130357:233..1000-

>mRNA_H-elongata_contig130357.2206.1 ID=mRNA_H-elongata_contig130357.2206.1|Name=mRNA_H-elongata_contig130357.2206.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig130357:233..1000- (Himanthalia elongata Himel1 dioecious)
CAGGTTCGAAACCCTAGCCTAGCGGGGAAAGCGGTCGCGGTGGTACAGTA
CCCGACCACGATGCATGACATGAAGGACATGACGCCAGACGATGATCGCA
TCGTCGAAGGCTCCGCGAGCTCCATCATCGCCGTCAGCTACGAGGCGCGG
GCATTCGGGCAGGTTCGAAACCCTAGCCTAGCGGGGAAAGCGGTCGCGGT
GGTACAGTACCCGACCACGATGCATGACATGAAGGACATGACGCCAGACG
ATGATCGCATCGTCGAAGGCTCCGCGAGCTCCATCATCGCCGTCAGCTAC
GAGGCGCGGGCATTCGGGGTGAAACGCATCATGAAGGGCGGCGAGGCCAG
GAAGGTGTGTCCGGAGTTGTCCCTGGTGCAGGTGCCCACCCGGAACAGCA
AGGCCGACATCTCCTTGTACAGGTGTGTGCACGCGTCACGTCGGGTCGTG
AAACGCATCATGAAGGGCGGCGAGGCCAGGAAGGTGTGTCCGGAGTTGTC
CCTGGTGCAGGTGCCCACCCGGAACAGCAAGGCCGACATCTCCTTGTACA
GGTGTGTGCACGCGTCACGTCGGGTC
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