mRNA_H-elongata_contig130304.2204.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 218 bits (554), Expect = 4.920e-66 Identity = 111/202 (54.95%), Postives = 140/202 (69.31%), Query Frame = 1
Query: 4 KSRLEKLELLLQLLVLLDNIDH-ETRSSLVSWERRVWSHYIKPMLADKTFCLRFRMEYEGFMSLVTWLRPALERDQKMGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAAGFKNRNTNDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKGFGMNFQ 606
K R+ +L LL ++VL+D D +TR V ERR W Y KPM+ D TF LRFRM+Y F L LRP LER+++MG+LRNG IPVE+Q+AM + +LAG SVF++MD +VI RSTAYAI+ RVI A+N LDCVWP G+ ++ R+TN VI VGA+DGLF+RM +PS+ H P FYSGHKKGFGMNFQ
Sbjct: 17 KKRMRQLLELLMIMVLMDEGDPPQTRDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGMYRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQ 218
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 204 bits (519), Expect = 1.010e-60 Identity = 99/177 (55.93%), Postives = 129/177 (72.88%), Query Frame = 1
Query: 76 RSSLVSWERRVWSHYIKPMLADKTFCLRFRMEYEGFMSLVTWLRPALERDQKMGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAAGFKNRNTNDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKGFGMNFQ 606
R + V ERR + Y++PM+ D TF RFRM+Y FM+L LRP L+RD+KMG+LRNGAIPVE+Q+AM + +LAG SVF++MDS+VI +STAYAI+ RVI A+N +L+C WP GD A ++ R+TN VI R VGA+DGLF+R+ P + H +P FYSGHKK FGMNFQ
Sbjct: 46 RGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQ 222
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 199 bits (507), Expect = 3.040e-59 Identity = 103/199 (51.76%), Postives = 132/199 (66.33%), Query Frame = 1
Query: 31 LLQLLVLLDNID------HETRSSLVSWERRVWSHYIKPMLADKTFCLRFRMEYEGFMSLVTWLRPALERDQKMGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAAGFKNRNTNDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKGFGMNFQV 609
LL L +LDN+ RS+LV+ ERR + YIKPML D TF +RFRMEY+ F LV LRPAL++++K G LRNGAIPVEYQVAM + WLAG S+++ MD HVI RSTAY + VI A+N L+C WP G+ + + DV+ + VGA+DGLF+RM +PS + P +Y+GHKKGFGMNFQV
Sbjct: 25 LLDALAILDNLSALDAPTKRNRSTLVARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDLPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 223
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE) HSP 1 Score: 169 bits (427), Expect = 5.950e-48 Identity = 86/179 (48.04%), Postives = 114/179 (63.69%), Query Frame = 1
Query: 52 LDNIDHETRSSLVSWERRVWSHYIKPMLADKTFCLRFRMEYEGFMSLVTWLRPALERDQKMGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAAGFKNRNTNDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKG 588
LD RS+LV+ ERR + +IKP+L D TF +RFRMEY+ F L+ LRPAL +++KMG LR GAIPVEYQ+AM + WLAG S+++ MD HVI RSTAY + VI A+N L+C WP DV+ + VGA+DGLF+RM +PS + P +Y+GH+KG
Sbjct: 38 LDAPTKRNRSTLVARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARM--------------DVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKG 202
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 161 bits (408), Expect = 2.560e-44 Identity = 78/140 (55.71%), Postives = 100/140 (71.43%), Query Frame = 1
Query: 190 LVTWLRPALERDQKMGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAAGFKNRNTNDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKGFGMNFQV 609
LV LRPAL+++Q+MG LRNGAIPVE QVAM + WLAG S+++ MD HVI RSTAY + VI A+N L+C WP G+ AA F+NR++ DV+ + VGA DGLF+RM +PS + P +Y+GHKKGFGMNFQ
Sbjct: 73 LVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQA 212
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE) HSP 1 Score: 145 bits (366), Expect = 2.990e-41 Identity = 70/126 (55.56%), Postives = 89/126 (70.63%), Query Frame = 1
Query: 232 MGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAAGFKNRNTNDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKGFGMNFQV 609
MG LRNGAIPVE QVAM + WLAG S+++ MD HVI RSTAY + VI A+N L+C WP G+ AA F+NR++ DV+ + VGA+D LF+RM +PS + P +Y+GHKKGFGMNFQV
Sbjct: 1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 126
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE) HSP 1 Score: 126 bits (316), Expect = 1.840e-31 Identity = 67/115 (58.26%), Postives = 82/115 (71.30%), Query Frame = 1
Query: 31 LLQLLVLLDNIDH------ETRSSLVSWERRVWSHYIKPMLADKTFCLRFRMEYEGFMSLVTWLRPALERDQKMGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAY 357
LL L +LDN+ +RS+LV+ RR + YIKPML D TF +RFRMEY+ F LV LRPAL++++KMG LRNGAIPVEYQVAM + WLAG S ++ MD HVI RSTAY
Sbjct: 25 LLDALAILDNLSALDPPSMRSRSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAY 139
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE) HSP 1 Score: 116 bits (290), Expect = 1.440e-27 Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 1
Query: 301 GASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAAGFKNRNTNDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKGFGMNFQV 609
G S+F++MD V +STAYAI+ RVI A+N DCVWP GD ++ R+TN+VI VGA+DGLF+ + PS+ H P FYSGHKKGFGMNFQ
Sbjct: 51 GGSIFEVMDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEGDDALDQCGVYRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQA 153
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 1.970e-22 Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query: 232 MGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDAVHGAAAGFKNRNT 471
MG LRNGAIPVEYQVAM + WLAG S+++ MD HVI RSTAY + VI A+N L+C WP G+ GAA F+NR++
Sbjct: 1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAAGAAELFRNRSS 80
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Match: A0A6H5J5V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5V5_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 3.520e-21 Identity = 57/150 (38.00%), Postives = 80/150 (53.33%), Query Frame = 1
Query: 166 MEYEGFMSLVTWLRPALERDQKMGSLRNGAIPVEYQVAMGVWWLAGASVFKIMDSHVITRSTAYAILRRVITAVNTLTRLDCVWPSGDA-VHGAAAGFKNRNT--NDVITRAVGALDGLFIRMRRPSIHDHPLPTRFYSGHKKGFGMNFQ 606
M + F L LR LE G NG I E+ +A + WLAG V D + STA+A +++ + A+N RL WP + + A F R + + V+ R VGAL+GL +R ++PSI +HP P RF+SGHK GMN+Q
Sbjct: 1 MSPKEFKGLYEMLRGRLECHGPEGRGHNGTIAGEWALASTLRWLAGHGVSAAADGPHMATSTAFAKIKKGLDAINDYGRLRIKWPRKERELQAKAQRFAARRSQLDPVLKRCVGALNGLLVRRKKPSITEHPYPHRFFSGHKMTVGMNYQ 150 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130304.2204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig130304.2204.1 >prot_H-elongata_contig130304.2204.1 ID=prot_H-elongata_contig130304.2204.1|Name=mRNA_H-elongata_contig130304.2204.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp MKSRLEKLELLLQLLVLLDNIDHETRSSLVSWERRVWSHYIKPMLADKTFback to top mRNA from alignment at H-elongata_contig130304:146..766- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig130304.2204.1 ID=mRNA_H-elongata_contig130304.2204.1|Name=mRNA_H-elongata_contig130304.2204.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=621bp|location=Sequence derived from alignment at H-elongata_contig130304:146..766- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig130304:146..766- >mRNA_H-elongata_contig130304.2204.1 ID=mRNA_H-elongata_contig130304.2204.1|Name=mRNA_H-elongata_contig130304.2204.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig130304:146..766- (Himanthalia elongata Himel1 dioecious)back to top |