prot_H-elongata_contig1302.2202.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig1302.2202.1
Unique Nameprot_H-elongata_contig1302.2202.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length404
Homology
BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: D7FQT7_ECTSI (RNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQT7_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 5.360e-109
Identity = 265/420 (63.10%), Postives = 280/420 (66.67%), Query Frame = 0
Query:    1 MLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHN-RGGSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRDGPRPSSGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRSGY---GGGGYNQGGDRSQQSYGGYSGQQQGYXXXXXXXXXXXXGXXXXQQDQGYATSGYSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQQQGYSSTGQAASXXXXXXX-------------TDTTGNGSYGASTAAASXXXXXXXXXXXXXAYRGGATTQSRQDRSYRPY 403
            MLKTHFGKWG+L+DVILMRNKITGEPRGFGFVQFQ ++SADAALKEEHVIDGRTIDVKRAVPRDRAP PRA  DR   N RGGSQ+G R GGMNDAPLTNKIFVGGLDQEVND+DFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYD+PD+VRKVM GG HELKGKSVEVKTAAPRDGPR  +GGGG XXXXXXXXXXXXXX XXXXXXXXXX        XXXXX         GGGYNQ     QQ  GGY                XXX XXX QQDQ YA+             XXXXXXXXX                            G Q GYS       XXXXXXX             TD +G+G YG +T AA+             AYRGGATTQ RQ+RSYRPY
Sbjct:   76 MLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSANARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQFNGGGGFXXXXXXXXXXXXXXYXXXXXXXXXXQQGWSQQGXXXXXXXXXXQQXXGGGYNQ-----QQQQGGYG---------------XXXXXXXGQQDQSYASX------------XXXXXXXXXQGAATTPRQSSQTASTGYNQGTTAQQGYGAQTGYSXXXXXXXXXXXXXXXXXXXXYGTSYAGTDASGSGGYG-NTGAATGYGTAGVDQGGYGAYRGGATTQGRQERSYRPY 462          
BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: A0A835M6Y2_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835M6Y2_9MAGN)

HSP 1 Score: 178 bits (451), Expect = 2.150e-48
Identity = 89/178 (50.00%), Postives = 116/178 (65.17%), Query Frame = 0
Query:    2 LKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRG-GSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRD 178
            L+ HF K+G + D ++MR+++T  PRGFGFV F   S  D AL+E HVI  RT++VK+AVPR    Q    ++++ H+RG G +  S  GG N    + KIFVGGL   V + +FRGYF KFG++ D VVMYD  T R RGFGFIT+D+ + V  VM    HEL  KSVEVK A P+D
Sbjct:   24 LRDHFSKYGEVIDTVIMRDRVTSRPRGFGFVVFADPSVVDQALEENHVICSRTVEVKKAVPRGEQHQHYHNSNQEQHSRGFGRKSSSNAGGNNTQFRSKKIFVGGLSASVTEEEFRGYFEKFGRITDVVVMYDSTTHRPRGFGFITFDSEEAVESVMQNNFHELNNKSVEVKRAVPKD 201          
BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: A0A835ZAL5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL5_9STRA)

HSP 1 Score: 169 bits (427), Expect = 2.110e-45
Identity = 94/188 (50.00%), Postives = 120/188 (63.83%), Query Frame = 0
Query:    2 LKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKE-EHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRDGPRPSSGGGG 188
            L  HF K+G+L+DV LM++K TG+PRGFGF++F+  S  DA L + EH IDGR +DVKRAVP+  AP P   T              RQ   N      K+FVGGL   V  ++FR YF  FG V DAVVM+D++T RSRGFGF+T+ +  VV+ V+  G HEL GK VEVKTA P++  R +S GGG
Sbjct:   34 LSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARAT--------------RQADFN------KVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLM-GTHELNGKMVEVKTAEPKESRRNASPGGG 200          
BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: A0A5A7PXB6_STRAF (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PXB6_STRAF)

HSP 1 Score: 168 bits (426), Expect = 8.540e-45
Identity = 89/190 (46.84%), Postives = 122/190 (64.21%), Query Frame = 0
Query:    1 MLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQ--MGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRDGPRPSSGGGG 188
            +L  HF K+G +S  ++ +++++G+PRGF FV F  +S+ D AL+E H I GRT++VKRA+PR         + +Q ++RG S+   G+ +G   D   T KIFVGGL   + + +FR YFAKFG++ D VVM+D  T R RGFGFITYD+ D V +VM    HEL GK VEVK A P+DG   S  G G
Sbjct:   22 ILNEHFNKYGVVSGSVIAKDRVSGQPRGFAFVTFSESSAVDRALQESHQILGRTVEVKRAIPRSEQQ-----SQQQHNSRGLSRNFSGTNKGRNTDEFRTKKIFVGGLSTNLTEQEFRSYFAKFGRITDVVVMHDNMTHRPRGFGFITYDSEDSVEEVMQKNFHELAGKLVEVKRAVPKDGSNSSGNGYG 206          
BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: UPI001C50233F (heterogeneous nuclear ribonucleoprotein 1-like n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C50233F)

HSP 1 Score: 167 bits (424), Expect = 1.020e-44
Identity = 90/178 (50.56%), Postives = 115/178 (64.61%), Query Frame = 0
Query:    2 LKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRDG 179
            LK HFGK+G + + ++MR+K TG  RGFGFV F   S AD AL+++HVI GRT++VK+AVPR    Q +     Q  N+G S   S  GG ++   T KIFVGGL   + + +F+ YF KFG+V D VVMYD  T R RGFGFIT+D+ + V  VM    HEL  K VEVK A P+DG
Sbjct:   22 LKDHFGKYGDVVESVIMRDKNTGSARGFGFVLFSDPSVADKALQDKHVILGRTVEVKKAVPR--GDQHQHXXXXQQQNKG-SIKNSSNGGSDNQFRTKKIFVGGLSSSLTEEEFKSYFEKFGRVTDVVVMYDSVTHRPRGFGFITFDSEEAVESVMQKNFHELNDKFVEVKRAVPKDG 196          
BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: I1I4K8_BRADI (Uncharacterized protein n=18 Tax=Pooideae TaxID=147368 RepID=I1I4K8_BRADI)

HSP 1 Score: 169 bits (429), Expect = 1.440e-44
Identity = 91/187 (48.66%), Postives = 114/187 (60.96%), Query Frame = 0
Query:    2 LKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRDGPRPSSGGGG 188
            L  HF  +G +S   +MR+K+TG PRGFGFV +   ++ DAAL E H +DGRT+DVKRA+ R+     +A       N GG    +   G      T KIFVGGL   + D +FR YF  FG V D VVMYD+ T R RGFGFIT+D+ D V +V+H   H+L GK VEVK A PR+   P SGGGG
Sbjct:   22 LHEHFSTFGEVSQAAVMRDKLTGRPRGFGFVVYADPAAVDAALLEPHTLDGRTVDVKRALSREEQQASKAVNPSTGRNTGGXXXXNDASGTR----TKKIFVGGLPSSLTDDEFRQYFQTFGAVTDVVVMYDQTTQRPRGFGFITFDSEDAVDRVLHKTFHDLGGKMVEVKRALPREA-NPGSGGGG 203          
BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: S8D8L2_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8D8L2_9LAMI)

HSP 1 Score: 166 bits (419), Expect = 3.210e-44
Identity = 87/183 (47.54%), Postives = 116/183 (63.39%), Query Frame = 0
Query:    2 LKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRD-GPRPS 183
            LK +FG +G + + ++MR++ TG  RGFGF+ F +   A+  +KE+H+IDGRT++ K+AVPRD         D  L NR     GS  G  + +  T KIFVGGL   V ++DF+ YF +FG + D VVMYD  T R RGFGFITYD+ D V +V+H   HEL GK VEVK A P++  P PS
Sbjct:   28 LKEYFGAYGEVIEAVIMRDRATGRARGFGFIVFANPLVAERVVKEKHIIDGRTVEAKKAVPRD---------DHHLMNRNTGSGGSIHGSPSQS-RTKKIFVGGLASTVTENDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLHNTFHELNGKMVEVKRAVPKELSPGPS 200          
BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: A0A2R6RN95_ACTCC (RNA-binding protein n=4 Tax=Actinidia TaxID=3624 RepID=A0A2R6RN95_ACTCC)

HSP 1 Score: 165 bits (418), Expect = 1.060e-43
Identity = 85/179 (47.49%), Postives = 116/179 (64.80%), Query Frame = 0
Query:    2 LKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRG-GSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRDG 179
            L+ HFGK+G++ D ++ R++ TG  RGFGFV F  +S+ + AL++ HVI  RT++VK+A+PR+   Q       Q  N+G    +GS  GG  D   T KIFVGGL   + + +F+ YF KFG++ D VVMYD  T R RGFGFIT+D+ D V +VM    HEL GK VEVK A P++G
Sbjct:   23 LRNHFGKYGAVVDSVIARDRTTGSHRGFGFVSFSDSSAVEKALQDSHVILERTVEVKKAIPRNEQHQ------NQQQNKGLNRNIGSSSGGSADQFRTKKIFVGGLAPILTEEEFKSYFEKFGRITDVVVMYDNVTSRPRGFGFITFDSEDAVEEVMKKSFHELTGKLVEVKRAVPKEG 195          
BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: A0A7S3UWI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWI8_HETAK)

HSP 1 Score: 160 bits (405), Expect = 1.400e-43
Identity = 82/177 (46.33%), Postives = 111/177 (62.71%), Query Frame = 0
Query:    2 LKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRD 178
            LK +F K+G L D  +M++K TG+PRGFGFVQF+ AS+ D  L EEH IDGR +D+K+A+ R+ AP+                       +++     KIFVGGL+Q V + DF+ YF KFG + DAVVM D+ T RSRGFGF+TY + + V +VM+   H L+ K VE+K A PRD
Sbjct:   30 LKFYFEKFGKLKDCAVMKDKFTGQPRGFGFVQFEDASAVDKVLAEEHTIDGRVLDIKKAISREHAPRA----------------------ISEKIDVKKIFVGGLEQAVTEGDFKDYFGKFGDITDAVVMMDRNTNRSRGFGFVTYADAESVNRVMN-ETHTLRDKVVEIKRAEPRD 183          
BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Match: A0A830BZA9_9LAMI (Heterogeneous nuclear ribonucleoprotein 1 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BZA9_9LAMI)

HSP 1 Score: 167 bits (424), Expect = 1.440e-43
Identity = 90/185 (48.65%), Postives = 116/185 (62.70%), Query Frame = 0
Query:    2 LKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQMGSRQGGMNDAPLTNKIFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMHGGVHELKGKSVEVKTAAPRD-GPRPSSG 185
            LK +FG +G + + ++MR++ TG  RGFGFV F + + A+  +KE+HVIDGRT++ K+AVPRD         D+ L NR      S QG       T KIFVGGL   V ++DF+ YF +FG + D VVMYD  T R RGFGFITYD+ D V  V+H   HEL GK VEVK A P++  P PS G
Sbjct:   22 LKAYFGAYGEVVEAVIMRDRTTGRARGFGFVVFSNPADAERVVKEKHVIDGRTVEAKKAVPRD---------DQHLINRNSGSSSSIQGSPGPG-RTKKIFVGGLASTVTENDFKTYFDQFGTIMDVVVMYDHNTQRPRGFGFITYDSEDAVDMVLHKTFHELNGKMVEVKRAVPKELSPGPSRG 196          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1302.2202.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT7_ECTSI5.360e-10963.10RNA-binding protein, putative n=2 Tax=Ectocarpus T... [more]
A0A835M6Y2_9MAGN2.150e-4850.00Uncharacterized protein n=1 Tax=Coptis chinensis T... [more]
A0A835ZAL5_9STRA2.110e-4550.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A5A7PXB6_STRAF8.540e-4546.84RNA-binding (RRM/RBD/RNP motifs) family protein n=... [more]
UPI001C50233F1.020e-4450.56heterogeneous nuclear ribonucleoprotein 1-like n=1... [more]
I1I4K8_BRADI1.440e-4448.66Uncharacterized protein n=18 Tax=Pooideae TaxID=14... [more]
S8D8L2_9LAMI3.210e-4447.54Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A2R6RN95_ACTCC1.060e-4347.49RNA-binding protein n=4 Tax=Actinidia TaxID=3624 R... [more]
A0A7S3UWI8_HETAK1.400e-4346.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A830BZA9_9LAMI1.440e-4348.65Heterogeneous nuclear ribonucleoprotein 1 n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 100..172
e-value: 6.8E-23
score: 92.1
coord: 1..58
e-value: 0.0011
score: 28.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 2..55
e-value: 1.5E-9
score: 37.5
coord: 101..157
e-value: 1.2E-14
score: 53.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..62
score: 13.311
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 99..176
score: 17.131
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 67..197
e-value: 2.0E-23
score: 84.8
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..66
e-value: 2.7E-18
score: 68.0
IPR037366BOULE/DAZ familyPANTHERPTHR11176BOULE-RELATEDcoord: 4..340
NoneNo IPR availablePANTHERPTHR11176:SF13GENE 17190-RELATEDcoord: 4..340
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 98..206
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1302contigH-elongata_contig1302:11801..15693 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1302.2202.1mRNA_H-elongata_contig1302.2202.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig1302 11416..16793 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig1302.2202.1 ID=prot_H-elongata_contig1302.2202.1|Name=mRNA_H-elongata_contig1302.2202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=404bp
MLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVI
DGRTIDVKRAVPRDRAPQPRATTDRQLHNRGGSQMGSRQGGMNDAPLTNK
IFVGGLDQEVNDSDFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNP
DVVRKVMHGGVHELKGKSVEVKTAAPRDGPRPSSGGGGSGYGGRGGYGGG
GGQGGGYSGGSGGYGGQQGWSQQGGYNDRSGYGGGGYNQGGDRSQQSYGG
YSGQQQGYGYNQQGGGGGGGGYGYGQQDQGYATSGYSQQGYGQGQQAAPA
ATRASSQTGSASGYSQTSTAQGYEAQTGYGQGYGQQQGYSSTGQAASGYG
TAYGTDTTGNGSYGASTAAASYGTAAVADQGGYGAYRGGATTQSRQDRSY
RPY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR037366BOULE/DAZ
IPR035979RBD_domain_sf