mRNA_H-elongata_contig100195.22.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100195.22.1
Unique NamemRNA_H-elongata_contig100195.22.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: A0A6H5KH14_9PHAE (B2-adapt-app_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH14_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.300e-31
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1
Query:    1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
            KH+D+PAGKAAVIWMVGEYGEEITEAPYMLEPLVD+WEEE S  IKMHLLTAAVK+FFKRPPEMQ
Sbjct:  462 KHIDEPAGKAAVIWMVGEYGEEITEAPYMLEPLVDAWEEEPSCQIKMHLLTAAVKLFFKRPPEMQ 526          
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: A0A835YU68_9STRA (Coatomer protein complex, beta sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU68_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.270e-23
Identity = 45/62 (72.58%), Postives = 57/62 (91.94%), Query Frame = 1
Query:   10 DDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
            D+PAGKAA+IWMVGEYG EI EAPYMLEPL+D++EEE +V++K+ LLTAA+K+FF RPPE+Q
Sbjct:  479 DEPAGKAALIWMVGEYGAEIPEAPYMLEPLIDAYEEETNVEVKLQLLTAAMKLFFARPPEVQ 540          
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: J3L227_ORYBR (Beta-adaptin-like protein n=20 Tax=BOP clade TaxID=359160 RepID=J3L227_ORYBR)

HSP 1 Score: 92.0 bits (227), Expect = 3.990e-20
Identity = 38/67 (56.72%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQVG 201
            K++ +P GKAA+IWM+GEY +++ +APY+LE LV++WEEE S ++++HLLTA +K FFKRPPE Q+ 
Sbjct:  458 KNIQEPKGKAALIWMLGEYSQDMHDAPYILESLVENWEEEHSPEVRLHLLTAVMKCFFKRPPETQMA 524          
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: A0A7S4D7F5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7F5_HETAK)

HSP 1 Score: 91.3 bits (225), Expect = 4.400e-20
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
            + ++DP GKAAVIWMVGEYG E+ EAPYMLEPL+D +EEE S ++++ LL A  K+FF+R PE+Q
Sbjct:   59 RRIEDPQGKAAVIWMVGEYGAELVEAPYMLEPLIDRYEEEPSGEVRLALLVATAKLFFQRAPEVQ 123          
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: A0A1D6NI63_MAIZE (Beta-adaptin-like protein A n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6NI63_MAIZE)

HSP 1 Score: 89.7 bits (221), Expect = 5.050e-20
Identity = 37/65 (56.92%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
            K++ +P GKAA+IWM+GEY +++ +APY+LE LV++W+EE S ++++HLLTA +K FFKRPPE Q
Sbjct:  127 KNIQEPKGKAALIWMLGEYSQDMHDAPYILENLVENWDEEHSPEVRLHLLTAVMKCFFKRPPETQ 191          
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: W1NSC6_AMBTC (Beta-adaptin-like protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NSC6_AMBTC)

HSP 1 Score: 91.7 bits (226), Expect = 5.440e-20
Identity = 37/65 (56.92%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
            +++ +P GKAA+IWM+GEY +++ +APY LE L+D+W+EE S ++++HLLTA VK FFKRPPE Q
Sbjct:  455 RNIQEPKGKAALIWMLGEYSQDMLDAPYTLESLIDNWDEEHSAEVRLHLLTAVVKCFFKRPPETQ 519          
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: A0A3Q8CI37_9SPER (Beta-adaptin-like protein n=4 Tax=Cupressaceae TaxID=3367 RepID=A0A3Q8CI37_9SPER)

HSP 1 Score: 91.7 bits (226), Expect = 5.450e-20
Identity = 37/65 (56.92%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
            K+V++P  KAA++WM+GEY +++ +APY+LE L+DSW+EE S ++++HLLTA  K FFKRPPE Q
Sbjct:  457 KNVEEPKAKAALVWMLGEYSQDMLDAPYILESLIDSWDEEDSAEVRLHLLTAVAKCFFKRPPETQ 521          
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: A0A7C9EPF7_OPUST (B2-adapt-app_C domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EPF7_OPUST)

HSP 1 Score: 90.9 bits (224), Expect = 6.130e-20
Identity = 37/65 (56.92%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
            K+V +P  KAA+IWM+GEY +++ +APY+LE L+D+WEEE S ++++HLLTA +K FF+RPPE Q
Sbjct:   53 KNVQEPKAKAALIWMLGEYAQDMADAPYILESLIDNWEEEDSAEVRLHLLTATMKCFFRRPPETQ 117          
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: A0A2P2J6K0_RHIMU (Beta-adaptin-like protein n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2J6K0_RHIMU)

HSP 1 Score: 91.3 bits (225), Expect = 7.430e-20
Identity = 37/65 (56.92%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
            K+V +P  KAA+IWM+GEY +E+T+APY+LE L+++W++E S ++++HLLTA +K FFKRPPE Q
Sbjct:  457 KNVQEPKAKAALIWMLGEYSQEMTDAPYVLESLIENWDDEHSAEVRLHLLTAVMKCFFKRPPETQ 521          
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: A0A2I4GNU5_JUGRE (Beta-adaptin-like protein n=2 Tax=Juglans TaxID=16718 RepID=A0A2I4GNU5_JUGRE)

HSP 1 Score: 91.3 bits (225), Expect = 7.440e-20
Identity = 38/65 (58.46%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
            K+V +P  KAA+IWM+GEY +++ +APY+LE L+D+WEEE S ++++HLLTA +K FFKRPPE Q
Sbjct:  457 KNVQEPKAKAALIWMLGEYSQDMHDAPYILESLIDNWEEEHSAEVRLHLLTAVMKCFFKRPPETQ 521          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH14_9PHAE1.300e-3189.23B2-adapt-app_C domain-containing protein n=2 Tax=E... [more]
A0A835YU68_9STRA2.270e-2372.58Coatomer protein complex, beta sub-unit n=1 Tax=Tr... [more]
J3L227_ORYBR3.990e-2056.72Beta-adaptin-like protein n=20 Tax=BOP clade TaxID... [more]
A0A7S4D7F5_HETAK4.400e-2061.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1D6NI63_MAIZE5.050e-2056.92Beta-adaptin-like protein A n=1 Tax=Zea mays TaxID... [more]
W1NSC6_AMBTC5.440e-2056.92Beta-adaptin-like protein n=1 Tax=Amborella tricho... [more]
A0A3Q8CI37_9SPER5.450e-2056.92Beta-adaptin-like protein n=4 Tax=Cupressaceae Tax... [more]
A0A7C9EPF7_OPUST6.130e-2056.92B2-adapt-app_C domain-containing protein (Fragment... [more]
A0A2P2J6K0_RHIMU7.430e-2056.92Beta-adaptin-like protein n=2 Tax=Rhizophora mucro... [more]
A0A2I4GNU5_JUGRE7.440e-2058.46Beta-adaptin-like protein n=2 Tax=Juglans TaxID=16... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100195contigH-elongata_contig100195:1347..2167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue1.6e-26
Seed eggNOG ortholog2880.D8LNY8
Preferred nameAP4B1
KEGG koko:K12401
KEGG Pathwayko04142,map04142
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019898,GO:0019899,GO:0019900,GO:0019901,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043424,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061938,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098796
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5096@1,KOG1061@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929544.4494014-CDS-H-elongata_contig100195:1346..14181622929544.4494014-CDS-H-elongata_contig100195:1346..1418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100195 1347..1418 +
1691679062.591754-CDS-H-elongata_contig100195:1346..14181691679062.591754-CDS-H-elongata_contig100195:1346..1418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100195 1347..1418 +
1622929544.4719665-CDS-H-elongata_contig100195:2029..21671622929544.4719665-CDS-H-elongata_contig100195:2029..2167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100195 2030..2167 +
1691679062.6065211-CDS-H-elongata_contig100195:2029..21671691679062.6065211-CDS-H-elongata_contig100195:2029..2167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100195 2030..2167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100195.22.1prot_H-elongata_contig100195.22.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100195 1347..2167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100195.22.1

>prot_H-elongata_contig100195.22.1 ID=prot_H-elongata_contig100195.22.1|Name=mRNA_H-elongata_contig100195.22.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLL
TAAVKVFFKRPPEMQVGRA*
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mRNA from alignment at H-elongata_contig100195:1347..2167+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100195.22.1 ID=mRNA_H-elongata_contig100195.22.1|Name=mRNA_H-elongata_contig100195.22.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=821bp|location=Sequence derived from alignment at H-elongata_contig100195:1347..2167+ (Himanthalia elongata Himel1 dioecious)
AAACACGTTGACGATCCAGCTGGCAAGGCAGCGGTTATCTGGATGGTCGG AGAGTACGGAGAGGAGATCACGGTACGGCCCAGTCGATGTTTTCTCTCGT GTTTAAAAACCTCTTGTAACACCTTTAGCAAAAAACGTTATTCACTTTAT TTACATATGTGGGTGTGACTAGGGTTTGACGAGGGAGGGAGAGCGTGAAA GGCGCTGTTCGTTCAAGGAGGGGGCTGCAGGGTCGTGCAGCCCCCCCTCT GCCAGCGGCCAGCCAACCAAGTATCCCGTCTCTGGAAAAATAGGGAGACG TTAAACGAAGATTTCGATCCCTCTGACGGTGTCCCCTACCCCTCCCCAGC CGCGGCCACGAAATTCACAATCCTGTACTCTGGTGTACGATTGGAATATA GAGTTGCATGCGAGTGCAACGTGCCATACGCGGTGTGAAGGTGTCCCTCG TCCACCTATCTCCCGCCCGATGTGCCTCTCCTGTTTCCTGACCCCACCCC TCCCTCTCAAGTGAACGCTAACGCTTTTCTCTATCACCCTAATCCCCTGT CTCGTTCATGGTCCGCGCTCTTGTGTTTGGTGCCCTCCTTTTTTTCGTTG TGTTTTTGTTTTTGTTTTTGTGCGGTCGTGATCTGGTGCCGTGTGTCGTC GTGTGTCGCATTTGTGGTGTTGGAGGGGGACAGGAAGCCCCGTACATGCT GGAGCCGCTGGTAGACTCCTGGGAGGAGGAAGCCTCGGTGGACATCAAGA TGCACCTTCTCACCGCGGCAGTGAAGGTCTTCTTCAAGCGGCCCCCGGAG ATGCAGGTGGGGCGCGCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig100195:1347..2167+

>mRNA_H-elongata_contig100195.22.1 ID=mRNA_H-elongata_contig100195.22.1|Name=mRNA_H-elongata_contig100195.22.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig100195:1347..2167+ (Himanthalia elongata Himel1 dioecious)
AAACACGTTGACGATCCAGCTGGCAAGGCAGCGGTTATCTGGATGGTCGG
AGAGTACGGAGAGGAGATCACGAAACACGTTGACGATCCAGCTGGCAAGG
CAGCGGTTATCTGGATGGTCGGAGAGTACGGAGAGGAGATCACGGAAGCC
CCGTACATGCTGGAGCCGCTGGTAGACTCCTGGGAGGAGGAAGCCTCGGT
GGACATCAAGATGCACCTTCTCACCGCGGCAGTGAAGGTCTTCTTCAAGC
GGCCCCCGGAGATGCAGGTGGGGCGCGCTTGAGAAGCCCCGTACATGCTG
GAGCCGCTGGTAGACTCCTGGGAGGAGGAAGCCTCGGTGGACATCAAGAT
GCACCTTCTCACCGCGGCAGTGAAGGTCTTCTTCAAGCGGCCCCCGGAGA
TGCAGGTGGGGCGCGCTTGA
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