mRNA_H-elongata_contig130146.2198.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130146.2198.1
Unique NamemRNA_H-elongata_contig130146.2198.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 1.500e-72
Identity = 106/164 (64.63%), Postives = 132/164 (80.49%), Query Frame = 1
Query:    4 SYIGPMLLNGTFSKRLRMDYDDFMVLVGYLRPALKKNEKMGRLRNGAVPVEYRVALTLRWLARGSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGHKKGFGMNFQ 495
            +YI PML + TFS R RM+YDDF VLV +LRPAL++NEK G LRNGA+PVEY+VA+TLRWLA GSIYE MDGHVIARSTAY +T  VI A+NACP+++CKW E E++          +   V+RKCVGAMDGLF+R+IKP+++E AEP ++Y+GHKKGFGMNFQ
Sbjct:   59 TYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDLPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 222          
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.080e-65
Identity = 98/141 (69.50%), Postives = 122/141 (86.52%), Query Frame = 1
Query:   73 MVLVGYLRPALKKNEKMGRLRNGAVPVEYRVALTLRWLARGSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGHKKGFGMNFQ 495
            +VLV +LRPAL+KN++MG LRNGA+PVE +VA+TLRWLA GSIYE MDGHVIARSTAY +T  VI A+NACP+++CKW E E+ +RAA LFR RSS  V+RKCVGA DGLF+R+IKP+++E AEP ++Y+GHKKGFGMNFQ
Sbjct:   71 LVLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 211          
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 5.470e-62
Identity = 95/158 (60.13%), Postives = 122/158 (77.22%), Query Frame = 1
Query:    4 SYIGPMLLNGTFSKRLRMDYDDFMVLVGYLRPALKKNEKMGRLRNGAVPVEYRVALTLRWLARGSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGHKKG 477
            ++I P+L + TFS R RM+YDDF VL+ +LRPAL KNEKMG LR GA+PVEY++A+TLRWLA GSIYE MDGHVIARSTAY +T  VI A+NACP+++CKW E              +   V+RKCVGAMDGLF+R+IKP+++E AEP ++Y+GH+KG
Sbjct:   59 THIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPE--------------ARMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKG 202          
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 9.870e-61
Identity = 88/125 (70.40%), Postives = 107/125 (85.60%), Query Frame = 1
Query:  121 MGRLRNGAVPVEYRVALTLRWLARGSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGHKKGFGMNFQ 495
            MG LRNGA+PVE +VA+TLRWLA GSIYE MDGHVIARSTAY +T  VI A+NACP+++CKW E E+ +RAA LFR RSS  V+RKCVGAMD LF+R+IKP+++E AEP ++Y+GHKKGFGMNFQ
Sbjct:    1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 125          
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 2.570e-59
Identity = 95/164 (57.93%), Postives = 122/164 (74.39%), Query Frame = 1
Query:    4 SYIGPMLLNGTFSKRLRMDYDDFMVLVGYLRPALKKNEKMGRLRNGAVPVEYRVALTLRWLARGSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGHKKGFGMNFQ 495
            +Y+ PM+ + TF KR RMDY DFM L   LRP L+++EKMG LRNGA+PVE+++A+TLR+LA GS++E MD +VIA+STAY I   VI A+N   Q++CKW   ++    A L+R RS+ GVIR+CVGAMDGLF+RLI P  +  A P  FYSGHKK FGMNFQ
Sbjct:   59 TYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQ 222          
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 4.310e-59
Identity = 92/164 (56.10%), Postives = 121/164 (73.78%), Query Frame = 1
Query:    4 SYIGPMLLNGTFSKRLRMDYDDFMVLVGYLRPALKKNEKMGRLRNGAVPVEYRVALTLRWLARGSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGHKKGFGMNFQ 495
            +Y  PM+ +GTF  R RMDY +F +L   LRP L++NE+MG LRNG +PVE+++A+ LR+LA GS++E MDG+VIARSTAY I   VI A+N   ++DC W E E+     G++R RS+ GVIR CVGAMDGLF+R+ +P+ R    P+ FYSGHKKGFGMNFQ
Sbjct:   55 TYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGMYRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQ 218          
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 5.440e-34
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 1
Query:  121 MGRLRNGAVPVEYRVALTLRWLARGSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFG 366
            MG LRNGA+PVEY+VA+TLRWLA GSIYE MDGHVIARSTAY +T  VI A+NACP+++CKW E E+ + AA LFR RSS+G
Sbjct:    1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAAGAAELFRNRSSYG 82          
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.140e-33
Identity = 66/99 (66.67%), Postives = 77/99 (77.78%), Query Frame = 1
Query:    4 SYIGPMLLNGTFSKRLRMDYDDFMVLVGYLRPALKKNEKMGRLRNGAVPVEYRVALTLRWLARGSIYEGMDGHVIARSTAYQITKE----VIAAMNACP 288
            +YI PML + TFS R RM+YDDF VLV +LRPAL+KNEKMG LRNGA+PVEY+VA+TLRWLA GS YE MDGHVIARSTAY    +    ++A M  CP
Sbjct:   59 TYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAYHAVCDAQYRIMAWMMNCP 157          
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5JYU2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU2_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 5.850e-33
Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 1
Query:  211 MDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGHKKGFGMNFQ 495
            MD HVIARSTAY  T  VI A+NAC +++CKW E E+ +RAA LFR RSS  V+RKCVGAMDG F+R+IKP+++E  EP +  +GHKKGFG NFQ
Sbjct:    1 MDDHVIARSTAYHETSTVINALNACSEVNCKWPEGEDAARAAELFRNRSSIDVVRKCVGAMDGFFVRMIKPSAKEVVEPNLCNNGHKKGFGTNFQ 95          
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.020e-27
Identity = 54/101 (53.47%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  193 GSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDEEVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGHKKGFGMNFQ 495
            GSI+E MDG V A+STAY I   VI A+N   + DC W E ++     G++R RS+  VI  CVGAMDGLF+ + +P+ R    P+ FYSGHKKGFGMNFQ
Sbjct:   52 GSIFEVMDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEGDDALDQCGVYRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQ 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130146.2198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JJA1_9PHAE1.500e-7264.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6B6_9PHAE1.080e-6569.50DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JVS8_9PHAE5.470e-6260.13DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KD49_9PHAE9.870e-6170.40Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6M2_9PHAE2.570e-5957.93DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE4.310e-5956.10DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J9B3_9PHAE5.440e-3470.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K540_9PHAE2.140e-3366.67DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JYU2_9PHAE5.850e-3363.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCG0_9PHAE1.020e-2753.47DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130146contigH-elongata_contig130146:600..1094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue7.9e-13
Seed eggNOG ortholog4792.ETI46469
EggNOG free text desc.nuclease activity
EggNOG OGs3QI3U@4776,KOG4585@1,KOG4585@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size495
Cds size477
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929773.68986-UTR-H-elongata_contig130146:599..6171622929773.68986-UTR-H-elongata_contig130146:599..617Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130146 600..617 +
1691679152.3952103-UTR-H-elongata_contig130146:599..6171691679152.3952103-UTR-H-elongata_contig130146:599..617Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130146 600..617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929773.7242868-CDS-H-elongata_contig130146:617..10941622929773.7242868-CDS-H-elongata_contig130146:617..1094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130146 618..1094 +
1691679152.4163556-CDS-H-elongata_contig130146:617..10941691679152.4163556-CDS-H-elongata_contig130146:617..1094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130146 618..1094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130146.2198.1prot_H-elongata_contig130146.2198.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130146 618..1094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130146.2198.1

>prot_H-elongata_contig130146.2198.1 ID=prot_H-elongata_contig130146.2198.1|Name=mRNA_H-elongata_contig130146.2198.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
MLLNGTFSKRLRMDYDDFMVLVGYLRPALKKNEKMGRLRNGAVPVEYRVA
LTLRWLARGSIYEGMDGHVIARSTAYQITKEVIAAMNACPQMDCKWSEDE
EVSRAAGLFRARSSFGVIRKCVGAMDGLFIRLIKPTSRETAEPKIFYSGH
KKGFGMNFQ
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mRNA from alignment at H-elongata_contig130146:600..1094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130146.2198.1 ID=mRNA_H-elongata_contig130146.2198.1|Name=mRNA_H-elongata_contig130146.2198.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=495bp|location=Sequence derived from alignment at H-elongata_contig130146:600..1094+ (Himanthalia elongata Himel1 dioecious)
GCATCGTACATCGGGCCGATGCTTTTAAATGGGACGTTCTCAAAGCGCCT CCGCATGGATTACGATGACTTCATGGTTTTAGTAGGGTACCTCCGGCCTG CCCTGAAGAAGAACGAAAAGATGGGACGTCTGCGCAATGGAGCGGTCCCT GTGGAATACCGGGTCGCGCTGACCTTGCGGTGGCTTGCAAGGGGATCTAT ATACGAGGGGATGGACGGCCACGTGATCGCGAGGAGCACAGCCTACCAGA TTACGAAGGAAGTTATCGCGGCTATGAACGCATGTCCTCAGATGGACTGC AAGTGGTCAGAGGATGAGGAAGTTTCCAGGGCCGCTGGTCTCTTCAGAGC CCGCAGCTCGTTCGGAGTCATCCGGAAGTGTGTGGGTGCCATGGACGGTT TATTCATCCGCTTAATCAAGCCTACCTCTCGAGAGACCGCGGAGCCGAAA ATCTTCTACAGCGGACACAAGAAGGGGTTCGGCATGAATTTTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig130146:600..1094+

>mRNA_H-elongata_contig130146.2198.1 ID=mRNA_H-elongata_contig130146.2198.1|Name=mRNA_H-elongata_contig130146.2198.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig130146:600..1094+ (Himanthalia elongata Himel1 dioecious)
ATGCTTTTAAATGGGACGTTCTCAAAGCGCCTCCGCATGGATTACGATGA
CTTCATGGTTTTAGTAGGGTACCTCCGGCCTGCCCTGAAGAAGAACGAAA
AGATGGGACGTCTGCGCAATGGAGCGGTCCCTGTGGAATACCGGGTCGCG
CTGACCTTGCGGTGGCTTGCAAGGGGATCTATATACGAGGGGATGGACGG
CCACGTGATCGCGAGGAGCACAGCCTACCAGATTACGAAGGAAGTTATCG
CGGCTATGAACGCATGTCCTCAGATGGACTGCAAGTGGTCAGAGGATGAG
GAAGTTTCCAGGGCCGCTGGTCTCTTCAGAGCCCGCAGCTCGTTCGGAGT
CATCCGGAAGTGTGTGGGTGCCATGGACGGTTTATTCATCCGCTTAATCA
AGCCTACCTCTCGAGAGACCGCGGAGCCGAAAATCTTCTACAGCGGACAC
AAGAAGGGGTTCGGCATGAATTTTCAGATGCTTTTAAATGGGACGTTCTC
AAAGCGCCTCCGCATGGATTACGATGACTTCATGGTTTTAGTAGGGTACC
TCCGGCCTGCCCTGAAGAAGAACGAAAAGATGGGACGTCTGCGCAATGGA
GCGGTCCCTGTGGAATACCGGGTCGCGCTGACCTTGCGGTGGCTTGCAAG
GGGATCTATATACGAGGGGATGGACGGCCACGTGATCGCGAGGAGCACAG
CCTACCAGATTACGAAGGAAGTTATCGCGGCTATGAACGCATGTCCTCAG
ATGGACTGCAAGTGGTCAGAGGATGAGGAAGTTTCCAGGGCCGCTGGTCT
CTTCAGAGCCCGCAGCTCGTTCGGAGTCATCCGGAAGTGTGTGGGTGCCA
TGGACGGTTTATTCATCCGCTTAATCAAGCCTACCTCTCGAGAGACCGCG
GAGCCGAAAATCTTCTACAGCGGACACAAGAAGGGGTTCGGCATGAATTT
TCAG
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