mRNA_H-elongata_contig130084.2195.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130084.2195.1
Unique NamemRNA_H-elongata_contig130084.2195.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig130084.2195.1 vs. uniprot
Match: D8LHV0_ECTSI (Diacylglycerol kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV0_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 7.150e-44
Identity = 81/101 (80.20%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:    1 QLGLSRALPVAQCREVKIRTLGTLPMQVDGEPWTQPPSEITVKMHNQAAMLRPATATERAVASVLSDVSQAIDGAEQDLVINERQARALLSRIRRTARVPD 303
            QLGLSRAL VAQCRE+++++  TLPMQVDGEPW QPPSEITVK+HNQAAMLRPAT TERAVASVL+DVS AI GAE+DLVINERQAR LLSRIRR+ R+P+
Sbjct:  577 QLGLSRALAVAQCREMQVKSSATLPMQVDGEPWKQPPSEITVKLHNQAAMLRPATTTERAVASVLNDVSSAIHGAEEDLVINERQARTLLSRIRRSTRLPE 677
[Close]
BLAST of mRNA_H-elongata_contig130084.2195.1 vs. uniprot
Match: A0A6H5LB27_9PHAE (Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB27_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 8.230e-42
Identity = 80/101 (79.21%), Postives = 91/101 (90.10%), Query Frame = 1 
Query:    1 QLGLSRALPVAQCREVKIRTLGTLPMQVDGEPWTQPPSEITVKMHNQAAMLRPATATERAVASVLSDVSQAIDGAEQDLVINERQARALLSRIRRTARVPD 303
            QLGLSRAL VAQCRE+++++  TLPMQVDGEPW QPPSEITVK+ NQAAMLRPAT TERAVASVL+DVS AI GAE+DLVINERQAR LLSRIRR+ R+P+
Sbjct: 1315 QLGLSRALAVAQCREMQVKSSATLPMQVDGEPWKQPPSEITVKLLNQAAMLRPATTTERAVASVLNDVSSAIHGAEEDLVINERQARILLSRIRRSTRLPE 1415
[Close]
BLAST of mRNA_H-elongata_contig130084.2195.1 vs. uniprot
Match: A0A836CH11_9STRA (Diacylglycerol kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH11_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.660e-14
Identity = 39/91 (42.86%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 QLGLSRALPVAQCREVKIRTLGTLPMQVDGEPWTQPPSEITVKMHNQAAMLRPATATERAVASVLSDVSQAIDGAEQDLVINERQARALLS 273
            Q+G+    PVAQ +E++IRT  TLPMQVDGEPW Q  S++ V+ H QA+MLRP+T  E  +   ++   Q +  A++  ++++  AR L+S
Sbjct:  755 QVGIGSGYPVAQGKELRIRTTRTLPMQVDGEPWRQAASDMVVRAHPQASMLRPSTPEEGRLRDKITFHEQVVKSAKEKGLVDDELARKLVS 845
[Close]
BLAST of mRNA_H-elongata_contig130084.2195.1 vs. uniprot
Match: I0Z0Q3_COCSC (DAGKa domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z0Q3_COCSC)

HSP 1 Score: 73.9 bits (180), Expect = 2.640e-13
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:    1 QLGLSRALPVAQCREVKIRTLGTLPMQVDGEPWTQPPSEITVKMHNQAAMLRPATATERAVASVLSDVSQAIDGAEQDLVINERQARALLSRI 279
            Q+GLSRA+ +AQCR  +I  L  LPMQ+DGEPW QPP+ + + +  QA MLR   +    VA+V   VS  ++  EQ  VI+  Q   L + I
Sbjct:  229 QVGLSRAIRLAQCRSARITALEALPMQIDGEPWRQPPATLDISLKGQAFMLRRIESGP--VAAVARAVSDVLESCEQKGVISAGQRHTLTAEI 319
[Close]
BLAST of mRNA_H-elongata_contig130084.2195.1 vs. uniprot
Match: A0A833RD89_9POAL (Diacylglycerol kinase n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833RD89_9POAL)

HSP 1 Score: 74.3 bits (181), Expect = 3.200e-13
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:    1 QLGLSRALPVAQCREVKIRTLGTLPMQVDGEPWTQPPSEITVKMHNQAAMLRPATATERAVASVLSDVSQAIDGAEQDLVINERQARALLSRI 279
            Q+GLSRA  +AQ   +KI  +  +P+Q+DGEPW QPP  +T+  H QA ML+    ++  +A   S VS  ++ AE + VIN  Q RALL  I
Sbjct:  684 QVGLSRADRLAQGSSLKIEIMDPMPIQIDGEPWLQPPCTLTISHHGQAFMLK--RISDETIARAASVVSDVLENAESNNVINASQKRALLQDI 774
[Close]
BLAST of mRNA_H-elongata_contig130084.2195.1 vs. uniprot
Match: A0A8K1CI23_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CI23_PYTOL)

HSP 1 Score: 73.9 bits (180), Expect = 4.360e-13
Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:    1 QLGLSRALPVAQCREVKIRTLGTLPMQVDGEPWTQPPSEITVKMHNQAAMLRPATATERAVASVLSDVSQAIDGAEQDLVINERQARALLSRIRRTARVPDGSN 312
            Q+GLS+A+ + Q + V I+   TLPMQ+DGEPW Q PSE+ +  H QA ML   T  ER    V   V + +D AE   VI+  Q   LL+ I R  RV DG N
Sbjct:  641 QVGLSKAVRLCQAKHVSIQLKETLPMQIDGEPWQQEPSEVDISFHQQAFMLSR-TVQERDF--VTRRVGEVLDWAENTGVISSTQRDVLLAEIAR--RVADGEN 739
[Close]
BLAST of mRNA_H-elongata_contig130084.2195.1 vs. uniprot
Match: A0A835CEJ0_9FABA (Diacylglycerol kinase n=1 Tax=Senna tora TaxID=362788 RepID=A0A835CEJ0_9FABA)

HSP 1 Score: 72.8 bits (177), Expect = 1.090e-12
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:    1 QLGLSRALPVAQCREVKIRTLGTLPMQVDGEPWTQPPSEITVKMHNQAAMLRPATATERAVASVLSDVSQAIDGAEQDLVINERQARALLSRI 279
            Q+GLSRA  +AQ +++KI+   + P+Q+DGEPW Q P  +++  HNQA ML+   A E  +    + +++ ++ AE + VIN  Q RALL  +
Sbjct:  549 QVGLSRAQRLAQGKQIKIQLFASFPVQIDGEPWFQQPCTLSITHHNQAFMLK--RAAEEPIGHASAIITEVLESAETNQVINASQKRALLQEM 639
[Close]
BLAST of mRNA_H-elongata_contig130084.2195.1 vs. uniprot
Match: A0A059A6B9_EUCGR (Diacylglycerol kinase n=5 Tax=Myrtoideae TaxID=1699513 RepID=A0A059A6B9_EUCGR)

HSP 1 Score: 72.8 bits (177), Expect = 1.100e-12
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    1 QLGLSRALPVAQCREVKIRTLGTLPMQVDGEPWTQPPSEITVKMHNQAAMLRPATATERAVASVLSDVSQAIDGAEQDLVINERQARALLSRI 279
            Q+GLSRA  +AQ   +KI+ L  LP+Q+DGEPW QPP  + +  H QA MLR     E  +    + ++  ++ AE + VIN  Q RALL  +
Sbjct:  632 QVGLSRAQRLAQGHSIKIQLLAALPVQIDGEPWFQPPCTLAISHHGQAFMLR--RTAEEPLGHAAAMIADVLENAEINQVINSSQRRALLQEM 722
[Close]
BLAST of mRNA_H-elongata_contig130084.2195.1 vs. uniprot
Match: A0A6J0ME65_RAPSA (diacylglycerol kinase 1-like n=4 Tax=Pentapetalae TaxID=1437201 RepID=A0A6J0ME65_RAPSA)

HSP 1 Score: 70.5 bits (171), Expect = 1.660e-12
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:    1 QLGLSRALPVAQCREVKIRTLGTLPMQVDGEPWTQPPSEITVKMHNQAAMLRPATATERAVASVLSDVSQAIDGAEQDLVINERQARALLSRI 279
            Q+GLSRA  +AQ + VKI+    LP+Q+DGEPW Q P  +T+  H QA ML+   A E  +    + ++  ++ AE + VIN  Q RALL  +
Sbjct:  126 QVGLSRARRLAQGQSVKIQLCAPLPVQIDGEPWFQQPCTLTISHHGQAFMLK--RAAEEPLGHAAAIITDVLENAETNEVINASQKRALLQEM 216
[Close]
BLAST of mRNA_H-elongata_contig130084.2195.1 vs. uniprot
Match: A0A0A9P257_ARUDO (Cl798_1 n=4 Tax=Arundo donax TaxID=35708 RepID=A0A0A9P257_ARUDO)

HSP 1 Score: 68.6 bits (166), Expect = 1.870e-12
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    1 QLGLSRALPVAQCREVKIRTLGTLPMQVDGEPWTQPPSEITVKMHNQAAMLRPATATERAVASVLSDVSQAIDGAEQDLVINERQARALLSRI 279
            Q+GLSRA  +AQ   +KI+   T+P+QVDGEPW+Q P  I V  HNQA ML+    +E  +    S ++  ++ AE   VI+  Q R LL  I
Sbjct:   42 QVGLSRAQRLAQGHHIKIQISTTMPIQVDGEPWSQEPCTIEVSHHNQAFMLK--RVSEEPLGHAASIMADILENAEDSGVISALQKRTLLQEI 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130084.2195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHV0_ECTSI7.150e-4480.20Diacylglycerol kinase n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5LB27_9PHAE8.230e-4279.21Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A836CH11_9STRA3.660e-1442.86Diacylglycerol kinase n=1 Tax=Tribonema minus TaxI... [more]
I0Z0Q3_COCSC2.640e-1344.09DAGKa domain-containing protein n=1 Tax=Coccomyxa ... [more]
A0A833RD89_9POAL3.200e-1344.09Diacylglycerol kinase n=1 Tax=Carex littledalei Ta... [more]
A0A8K1CI23_PYTOL4.360e-1345.19Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A835CEJ0_9FABA1.090e-1239.78Diacylglycerol kinase n=1 Tax=Senna tora TaxID=362... [more]
A0A059A6B9_EUCGR1.100e-1241.94Diacylglycerol kinase n=5 Tax=Myrtoideae TaxID=169... [more]
A0A6J0ME65_RAPSA1.660e-1241.94diacylglycerol kinase 1-like n=4 Tax=Pentapetalae ... [more]
A0A0A9P257_ARUDO1.870e-1243.01Cl798_1 n=4 Tax=Arundo donax TaxID=35708 RepID=A0A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130084contigH-elongata_contig130084:89..1234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.6
Seed ortholog evalue4.1e-37
Seed eggNOG ortholog2880.D8LHV0
KEGG rclassRC00002,RC00017
KEGG koko:K00901
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231
GOsGO:0003674,GO:0003824,GO:0004143,GO:0005488,GO:0005509,GO:0006793,GO:0006796,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009611,GO:0009628,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0022622,GO:0032501,GO:0032502,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0048364,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0099402
EggNOG free text desc.protein kinase C-activating G-protein coupled receptor signaling pathway
EggNOG OGsKOG1169@1,KOG1169@2759
EC2.7.1.107
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiondiacylglycerol kinase
Ec32 orthologEc-18_000560.2
Exons3
Model size330
Cds size330
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130084.2195.1prot_H-elongata_contig130084.2195.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130084 89..1234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929773.376156-CDS-H-elongata_contig130084:88..1691622929773.376156-CDS-H-elongata_contig130084:88..169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130084 89..169 +
1691679152.2818577-CDS-H-elongata_contig130084:88..1691691679152.2818577-CDS-H-elongata_contig130084:88..169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130084 89..169 +
1622929773.392579-CDS-H-elongata_contig130084:420..4801622929773.392579-CDS-H-elongata_contig130084:420..480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130084 421..480 +
1691679152.2922363-CDS-H-elongata_contig130084:420..4801691679152.2922363-CDS-H-elongata_contig130084:420..480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130084 421..480 +
1622929773.4036374-CDS-H-elongata_contig130084:1045..12341622929773.4036374-CDS-H-elongata_contig130084:1045..1234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130084 1046..1234 +
1691679152.3007586-CDS-H-elongata_contig130084:1045..12341691679152.3007586-CDS-H-elongata_contig130084:1045..1234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130084 1046..1234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130084.2195.1

>prot_H-elongata_contig130084.2195.1 ID=prot_H-elongata_contig130084.2195.1|Name=mRNA_H-elongata_contig130084.2195.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
QLGLSRALPVAQCREVKIRTLGTLPMQVDGEPWTQPPSEITVKMHNQAAM
LRPATATERAVASVLSDVSQAIDGAEQDLVINERQARALLSRIRRTARVP
DGSNDGLLP*
back to top

mRNA from alignment at H-elongata_contig130084:89..1234+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130084.2195.1 ID=mRNA_H-elongata_contig130084.2195.1|Name=mRNA_H-elongata_contig130084.2195.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1146bp|location=Sequence derived from alignment at H-elongata_contig130084:89..1234+ (Himanthalia elongata Himel1 dioecious)
CAGTTGGGGTTATCGCGCGCCCTGCCCGTGGCGCAATGTCGTGAGGTGAA
GATCCGCACCTTGGGCACGTTGCCTATGCAGGTGCGAGCGATGCCGCCGA
CGTGCACTCAGTAAAGTAAGAAAGGCGACGCGACCGGAAAGGGAGAACCC
CAGCACTTGCTTGTTGGAGAGGGTGGGGGAGAGGTGTAACCATTGGCAGT
CTCCCCCCCCCCTGTCTGTGCTATACGATGTGTCGGCAAACAATGTCCAC
ACACAAGGCTCTTGGAGTTTAGGTTTTCGCTTTTGTGCTTTGGGCCGTCA
TCGTGCGCTGTTCGATCTATCTGCTTGATGAGGTGGATGGCGAGCCGTGG
ACCCAGCCGCCTTCGGAGATCACCGTCAAGATGCACAATCAGGTACGGAC
GCGCGCGGGTATCCACATCTGCTATTGTAGGGCGTTTTTGTGTCAAGATT
CCGTAAGGTTTTGTGGCGAGTGTTGAATCGCGGTAGCTTTTAAGAGTTTT
CAACTCAGAAGGAGAAGCGGGACTGATTTTGATTCCACGGTTCCGCGGAA
ATCGCGATACCATCCGACTACGGAGAATGATGGTCACTTTGAGCATTTAG
GGTTTTGGAGTAAATATAATAATGCTATCGTGAAAGCCATATATTCTGAG
GATGAGTCGATGCTATCCAGCGTTCACAATTAAAAAAAAATCGGGAATCG
AAATGAAAGTGCAAAGTTTAGTCTAGAATGAAGAATTATAGATTGTTACG
GTTCGGTAGCACTTTTAATAGTATTAGTGCCGGCAACGCTATTTCCGGTG
TAGTACGCCAAAGGTTCGTGAGACCTTGACCCACACAATGGAGTTCTAAA
GAGATGGTTTTTCGCGTATATCGCTGACCTACGTGGCGTCCCAAAGTTGA
CAGAAAAGACTGGCTTGCCACCGTGGTTCGTTCTTGATCGTAAAAAACCC
GGCTCAGGCGGCGATGCTGAGGCCGGCCACCGCGACGGAACGTGCGGTGG
CGAGCGTGCTGAGTGACGTCAGTCAGGCGATCGACGGAGCGGAGCAAGAC
TTGGTCATCAACGAGCGGCAAGCGCGGGCGCTGCTGAGCAGGATAAGACG
AACCGCGCGGGTACCTGACGGGTCAAATGATGGCTTGTTGCCGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig130084:89..1234+

>mRNA_H-elongata_contig130084.2195.1 ID=mRNA_H-elongata_contig130084.2195.1|Name=mRNA_H-elongata_contig130084.2195.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig130084:89..1234+ (Himanthalia elongata Himel1 dioecious)
CAGTTGGGGTTATCGCGCGCCCTGCCCGTGGCGCAATGTCGTGAGGTGAA
GATCCGCACCTTGGGCACGTTGCCTATGCAGCAGTTGGGGTTATCGCGCG
CCCTGCCCGTGGCGCAATGTCGTGAGGTGAAGATCCGCACCTTGGGCACG
TTGCCTATGCAGGTGGATGGCGAGCCGTGGACCCAGCCGCCTTCGGAGAT
CACCGTCAAGATGCACAATCAGGTGGATGGCGAGCCGTGGACCCAGCCGC
CTTCGGAGATCACCGTCAAGATGCACAATCAGGCGGCGATGCTGAGGCCG
GCCACCGCGACGGAACGTGCGGTGGCGAGCGTGCTGAGTGACGTCAGTCA
GGCGATCGACGGAGCGGAGCAAGACTTGGTCATCAACGAGCGGCAAGCGC
GGGCGCTGCTGAGCAGGATAAGACGAACCGCGCGGGTACCTGACGGGTCA
AATGATGGCTTGTTGCCGTGAGCGGCGATGCTGAGGCCGGCCACCGCGAC
GGAACGTGCGGTGGCGAGCGTGCTGAGTGACGTCAGTCAGGCGATCGACG
GAGCGGAGCAAGACTTGGTCATCAACGAGCGGCAAGCGCGGGCGCTGCTG
AGCAGGATAAGACGAACCGCGCGGGTACCTGACGGGTCAAATGATGGCTT
GTTGCCGTGA
back to top