mRNA_H-elongata_contig102509.219.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102509.219.1
Unique NamemRNA_H-elongata_contig102509.219.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: D7FKU0_ECTSI (Putative serine rich protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU0_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 8.840e-31
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 2
Query:    2 GSSEPMAMEPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITSDTEYIPMIWGEKDMTTARLSNL 241
            G   P+A EPTEC  K+G++FDF+DA DL+AL+PGMSWWYNWSPAII  EVK AQ +S  EYIPMIWGEKD+ + RL+NL
Sbjct:  117 GDPSPVATEPTECHGKRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIWGEKDLDSTRLANL 196          
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: D8LG92_ECTSI (F5/8 type C domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG92_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.280e-20
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 2
Query:    2 GSSEPMAMEPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITSDTEYIPMIWGEKDMTTARLSNL 241
            GSSEP+ + PT+CS+K+G+AF F+++ DL  L  G+SWWY+WSP  +   +  A +T  + Y+PMIWGE D+T  RL +L
Sbjct:   86 GSSEPVELVPTQCSSKRGVAFGFKESGDLYTLKTGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDL 165          
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: A0A6H5KQ88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ88_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.080e-19
Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    2 GSSEPMAMEPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITSDTEYIPMIWGEKDMTTARLSNL 241
            G SEP+ + PT+CS+K+G+AF F+++ DL  L  G+SWWY+WSP  +   +  A +T  + Y+PMIWGE D+T  RL +L
Sbjct:   49 GHSEPVELVPTQCSSKRGVAFGFKESDDLYTLKKGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDL 128          
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: UPI0013DD757D (glycosyl hydrolase n=1 Tax=Pyxidicoccus caerfyrddinensis TaxID=2709663 RepID=UPI0013DD757D)

HSP 1 Score: 65.9 bits (159), Expect = 6.850e-11
Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 2
Query:    2 GSSEPMAMEPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAI---IPLEVKAAQITSDTEYIPMIWG 205
            G S     EPT  S K+G+AFD    ADL A+SPG+SWWYNWSP     +P + +A       ++IPM+W 
Sbjct:   37 GVSRDAGTEPTAKSAKRGIAFDLATPADLAAVSPGVSWWYNWSPRPHRDVPTDYRARY---GMDFIPMLWN 104          
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: A0A554GSE9_9DELT (Glyco_hydro_cc domain-containing protein n=2 Tax=Corallococcus TaxID=83461 RepID=A0A554GSE9_9DELT)

HSP 1 Score: 65.5 bits (158), Expect = 8.060e-11
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 2
Query:   41 SNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITS-DTEYIPMIWG 205
            S+K+G+A+ +  AADL+ALSPGMSWWYNWSP   P +  A+  +S +  ++PM WG
Sbjct:   23 SSKRGIAYGYHSAADLKALSPGMSWWYNWSPR--PEDGAASVYSSQNVSFVPMAWG 76          
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: A0A017T4U7_9DELT (Putative secreted protein n=2 Tax=Chondromyces apiculatus TaxID=51 RepID=A0A017T4U7_9DELT)

HSP 1 Score: 65.5 bits (158), Expect = 1.110e-10
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 2
Query:   14 PMAMEPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITSDTEYIPMIWGEKDMTTARLSNL 241
            P +  PT C  K+G+A+ +   AD++ALSPG+SWWYNW+          A  T   +Y+PM+WG   +  AR + +
Sbjct:   77 PPSSHPTGC--KRGVAYGYHSTADMQALSPGVSWWYNWTHVPDEGVRPDAYETLGVDYVPMVWGGDGLDGARAAQI 150          
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: A0A3A8HWT0_9DELT (Glyco_hydro_cc domain-containing protein n=4 Tax=Myxococcaceae TaxID=31 RepID=A0A3A8HWT0_9DELT)

HSP 1 Score: 65.1 bits (157), Expect = 1.260e-10
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 2
Query:   41 SNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITSDT-EYIPMIWG 205
            S K+GLA+ +  AADL+ALSPGMSWWYNWSP   P +  A+   S+   ++PM WG
Sbjct:   42 SAKRGLAYGYHSAADLKALSPGMSWWYNWSPR--PEDGAASVYASEAVSFVPMAWG 95          
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: A0A4Q5XY15_9DELT (Glyco_hydro_cc domain-containing protein n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q5XY15_9DELT)

HSP 1 Score: 64.7 bits (156), Expect = 1.650e-10
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 2
Query:   26 EPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITSDT-EYIPMIWG 205
            +P   S K+G+A+ +  A DL+ALSPGMSWWYNWSP   P    A+  TS++  ++PM WG
Sbjct:   28 DPATKSAKRGIAYGYHSADDLKALSPGMSWWYNWSPR--PEAGAASVYTSESVSFVPMAWG 86          
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: A0A0K1E7A5_CHOCO (Glyco_hydro_cc domain-containing protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1E7A5_CHOCO)

HSP 1 Score: 63.9 bits (154), Expect = 3.730e-10
Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 2
Query:   14 PMAMEPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITSDTEYIPMIWGEKDMTTARLSNL 241
            P + +PT C  K+G+A+ +   AD+ ALSP +SWWYNW+          A  T   EY+PM+WG   +  AR + +
Sbjct:   59 PPSSQPTGC--KRGVAYGYHSQADMLALSPAVSWWYNWTHVPDEGVRPDAYTTIGVEYVPMVWGGGGLDAARATQI 132          
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: H8H0W5_DEIGI (F5/8 type C domain-containing protein n=2 Tax=Deinococcus TaxID=1298 RepID=H8H0W5_DEIGI)

HSP 1 Score: 63.9 bits (154), Expect = 4.450e-10
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 2
Query:   17 MAMEPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITSDTEYIPMIWG 205
            +  + T  S K+GLA+D   A DL AL+PG+SWWYNWSPA      + A  T   +++PM+W 
Sbjct:   35 LTAQATAKSAKRGLAYDLATAPDLAALAPGVSWWYNWSPAPNGGAPQNAASTYGMDFVPMVWN 97          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKU0_ECTSI8.840e-3167.50Putative serine rich protein n=2 Tax=Ectocarpus Ta... [more]
D8LG92_ECTSI1.280e-2048.75F5/8 type C domain protein n=1 Tax=Ectocarpus sili... [more]
A0A6H5KQ88_9PHAE1.080e-1947.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0013DD757D6.850e-1145.07glycosyl hydrolase n=1 Tax=Pyxidicoccus caerfyrddi... [more]
A0A554GSE9_9DELT8.060e-1151.79Glyco_hydro_cc domain-containing protein n=2 Tax=C... [more]
A0A017T4U7_9DELT1.110e-1038.16Putative secreted protein n=2 Tax=Chondromyces api... [more]
A0A3A8HWT0_9DELT1.260e-1053.57Glyco_hydro_cc domain-containing protein n=4 Tax=M... [more]
A0A4Q5XY15_9DELT1.650e-1049.18Glyco_hydro_cc domain-containing protein n=1 Tax=M... [more]
A0A0K1E7A5_CHOCO3.730e-1038.16Glyco_hydro_cc domain-containing protein n=1 Tax=C... [more]
H8H0W5_DEIGI4.450e-1044.44F5/8 type C domain-containing protein n=2 Tax=Dein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102509contigH-elongata_contig102509:189..842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue9.4e-25
Seed eggNOG ortholog2880.D7FKU0
Preferred nameTOS1
GOsGO:0000271,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0003843,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005975,GO:0005976,GO:0006073,GO:0006074,GO:0006075,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009272,GO:0009277,GO:0009987,GO:0010383,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0030312,GO:0033692,GO:0034406,GO:0034407,GO:0034410,GO:0034411,GO:0034637,GO:0034645,GO:0035251,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0051273,GO:0051274,GO:0051278,GO:0070589,GO:0070592,GO:0070879,GO:0070880,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071944,GO:0071966,GO:0071969,GO:0071970,GO:1901576
EggNOG free text desc.Putative TOS1-like glycosyl hydrolase (DUF2401)
EggNOG OGs2CBPA@1,2QSI7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size241
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102509.219.1prot_H-elongata_contig102509.219.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102509 205..842 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.7562213-UTR-H-elongata_contig102509:188..2041622929562.7562213-UTR-H-elongata_contig102509:188..204Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102509 189..204 +
1691679071.5192938-UTR-H-elongata_contig102509:188..2041691679071.5192938-UTR-H-elongata_contig102509:188..204Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102509 189..204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.773747-CDS-H-elongata_contig102509:204..3051622929562.773747-CDS-H-elongata_contig102509:204..305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102509 205..305 +
1691679071.528871-CDS-H-elongata_contig102509:204..3051691679071.528871-CDS-H-elongata_contig102509:204..305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102509 205..305 +
1622929562.789676-CDS-H-elongata_contig102509:718..8421622929562.789676-CDS-H-elongata_contig102509:718..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102509 719..842 +
1691679071.5380564-CDS-H-elongata_contig102509:718..8421691679071.5380564-CDS-H-elongata_contig102509:718..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102509 719..842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102509.219.1

>prot_H-elongata_contig102509.219.1 ID=prot_H-elongata_contig102509.219.1|Name=mRNA_H-elongata_contig102509.219.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MAMEPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQ
ITSDTEYIPMIWGEKDMTTARLSNL
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mRNA from alignment at H-elongata_contig102509:189..842+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102509.219.1 ID=mRNA_H-elongata_contig102509.219.1|Name=mRNA_H-elongata_contig102509.219.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=654bp|location=Sequence derived from alignment at H-elongata_contig102509:189..842+ (Himanthalia elongata Himel1 dioecious)
AGGCTCGTCCGAACCTATGGCGATGGAGCCGACGGAGTGCAGCAACAAGA AGGGGCTGGCGTTCGACTTCCAGGATGCCGCCGACTTAGAGGCGCTATCT CCCGGCATGTCTTGGTGGTGAGGGAAGGAGGGAGGGAGGGAAGGGAAGGG AAGGCGGGTGGAAACCCCTGCTGCTCCGCGTGTGCTACCAGCGCCTATTA AATTCAGAGGGTAAAATTATAGGAGAGGATCAATAGTCGACTTTCCCGCA GGGGTTGGAGGCAATTGCCCACGCTCTTAAGACGTTAAGGTCTGGAAGAA TGCGCTCGCAACCCGACGAATGGTCGATGTGGATCGCCTTAGGACCAAGC ACCCCGGCTTGGAATGTTCATGTATATTAATGCACCTTTGCGATACACGG CCCGGGAAAATCTGTGATATGCTCTCATTGTTCGTTCGGCCTTCGGGCTC TAGCGGAGGGGATGACGTCGCGGCCATGGTCTTCGTTTCCGCGTGAATCT GTCACGCGAACGTGTTTTCTTGTTTTTAAGGTACAATTGGTCACCTGCCA TCATCCCCTTGGAGGTGAAGGCCGCGCAAATCACGTCGGACACTGAATAC ATCCCTATGATCTGGGGCGAGAAGGACATGACCACCGCACGACTCAGCAA CCTC
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Coding sequence (CDS) from alignment at H-elongata_contig102509:189..842+

>mRNA_H-elongata_contig102509.219.1 ID=mRNA_H-elongata_contig102509.219.1|Name=mRNA_H-elongata_contig102509.219.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig102509:189..842+ (Himanthalia elongata Himel1 dioecious)
ATGGCGATGGAGCCGACGGAGTGCAGCAACAAGAAGGGGCTGGCGTTCGA
CTTCCAGGATGCCGCCGACTTAGAGGCGCTATCTCCCGGCATGTCTTGGT
GATGGCGATGGAGCCGACGGAGTGCAGCAACAAGAAGGGGCTGGCGTTCG
ACTTCCAGGATGCCGCCGACTTAGAGGCGCTATCTCCCGGCATGTCTTGG
TGGTACAATTGGTCACCTGCCATCATCCCCTTGGAGGTGAAGGCCGCGCA
AATCACGTCGGACACTGAATACATCCCTATGATCTGGGGCGAGAAGGACA
TGACCACCGCACGACTCAGCAACCTCGTACAATTGGTCACCTGCCATCAT
CCCCTTGGAGGTGAAGGCCGCGCAAATCACGTCGGACACTGAATACATCC
CTATGATCTGGGGCGAGAAGGACATGACCACCGCACGACTCAGCAACCTC
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