mRNA_H-elongata_contig13000.2189.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13000.2189.1 vs. uniprot
Match: D7FKF6_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKF6_ECTSI) HSP 1 Score: 237 bits (605), Expect = 4.560e-69 Identity = 177/350 (50.57%), Postives = 215/350 (61.43%), Query Frame = 1
Query: 1 RCRLYDEHGIIIETSTHLEDIMMSDHFHIEDRCVVQPVRDGAIRVNVEVEIKFLKSTMFRKTIETKSLSESREVWEAFFRMTKEAIRIRQPAFPL-PVSSGGNESDDEDRVRATRERLXXXXXXXXXXVQPPHHXXXXXXXXXXXXXSAAATKAHTV--RPRAKSASSRIPLGLPVEDRPDGPE-----KKVRAGI----HHGGS-----------------------------------------ATQASVSSAWSRVFSFAALPWVLLAILFLIEGVQVLRFSWETAGFLEAAETALAVMGA----DGEGNEG-----NNVREAVLREELARGLLKIYSRNRFVWPFS 864
RCRLYDEHG+I+ETSTHLEDI+MSD+F I+DRCVVQP +DGA+RV+VE+EIKF KSTMFRKTIETKSLSE+R+VWE+F MTK+AIR R+PA P+ V+SGG+ESDDEDR+RATRE XXXXXXXXXX XXXXXXXXXXXXX V RPRAKSA++ P V R + K+ +G+ G S V S + +FSFAA+PW+LLA++ + E + RFS ETAGFLEAAE AL V+G DG+G G L ELARGL++IY R+RF+WPFS
Sbjct: 419 RCRLYDEHGLILETSTHLEDIVMSDYFQIDDRCVVQPGQDGAVRVDVEIEIKFFKSTMFRKTIETKSLSETRQVWESFIGMTKDAIRKRKPAMPVRTVTSGGDESDDEDRIRATREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGVESRPRAKSATAAAPTMAAVPPRAPAQDAAPLRKRGYSGVGFDRKRGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVAAMDTAEYVVVPPVESLSNWLFSFAAVPWLLLALVLVAEVIAYSRFSSETAGFLEAAEAALVVLGGSRAEDGDGGGGVVGNRTAASRTALTAELARGLMRIYCRHRFLWPFS 768
BLAST of mRNA_H-elongata_contig13000.2189.1 vs. uniprot
Match: A0A6H5L0Q2_9PHAE (VASt domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q2_9PHAE) HSP 1 Score: 210 bits (535), Expect = 1.140e-58 Identity = 159/308 (51.62%), Postives = 196/308 (63.64%), Query Frame = 1
Query: 1 RCRLYDEHGIIIETSTHLEDIMMSDHFHIEDRCVVQPVRDGAIRVNVEVEIKFLKSTMFRKTIETKSLSESREVWEAFFRMTKEAIRIRQPAFPL-PVSSGGNESDDEDRVRATRERLXXXXXXXXXXVQPPHHXXXXXXXXXXXXXSAAATKAHTV--RPRAKS---------ASSRIPLGLPVED---------------RPDG------PEKK----------------VRAGIHHGGSATQASVSSAWSRVFSFAALPWVLLAILFLIEGVQVLRFSWETAGFLEAAETALAVMGA----DGEG 765
RCRLYDEHG+I+ETSTHLEDI+MSD+F I+DRCVVQP +DGA+RV+VE+EIKF KSTMFRKTIETKSLSE+R+VWE+F MTK+A+R R+PA P+ +SGG+ESDDEDR+RATRERLXXXXXXXXXX X XXXXXXXXXXX V RPR+KS +++ +P +D R G PE+K + + G V S + +FSFAA+PWVLLA++ + E + RFS ETAGFLEAAE AL V+G DG+G
Sbjct: 528 RCRLYDEHGLILETSTHLEDILMSDYFQIDDRCVVQPGQDGAVRVDVEIEIKFFKSTMFRKTIETKSLSETRQVWESFIGMTKDALRKRKPAMPVRTTTSGGDESDDEDRIRATRERLXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXEVGSRPRSKSXXXXXXXXPSTAAVPPRAQAQDAAPLRKRGYSGVGFDRKRGSSGGALPERKRGGSXXXXXXXXEGRKLVGAMDTAGYVVVPPVDSLSNWLFSFAAVPWVLLALVLVAEVIAYSRFSSETAGFLEAAEAALVVLGGSRAEDGDG 835
BLAST of mRNA_H-elongata_contig13000.2189.1 vs. uniprot
Match: W2MLG7_PHYPR (VASt domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=W2MLG7_PHYPR) HSP 1 Score: 74.7 bits (182), Expect = 2.490e-11 Identity = 43/120 (35.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 1 RCRLYDEHGI-IIETSTHLEDIMMSDHFHIEDRCVVQP--VRDGAIRVNVEVEIKFLKSTMFRKTIETKSLSESREVWEAFFRMTKEAIRIR---QPAFPLPVSSGGNESDDEDRVRATR 342
+C ++HG+ ++E+ST L DI D+F +EDR + P A +V +E+++ F KST ++KTIET+++S++R WE + RM KE + R + A P +S + +D VR R
Sbjct: 460 QCLKENDHGVRVVESSTRLVDIPYGDYFSVEDRWTIVPRSSNPNACKVFIELKVVFGKSTFWKKTIETRAISDNRAKWEKWVRMAKEFLDTRGVNEEAPESPPTSSSSSEIVQDAVRKDR 579
BLAST of mRNA_H-elongata_contig13000.2189.1 vs. uniprot
Match: A0A329SKC0_9STRA (VASt domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SKC0_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.450e-10 Identity = 44/125 (35.20%), Postives = 70/125 (56.00%), Query Frame = 1
Query: 1 RCRLYDEHGI-IIETSTHLEDIMMSDHFHIEDRCVVQP--VRDGAIRVNVEVEIKFLKSTMFRKTIETKSLSESREVWEAFFRMTKEAIRIRQ--------PAFPLPVSSGGNESDDEDRVRATR 342
+C ++HG+ ++E+ST L DI D+F +EDR + P A +V +E+++ F KST ++KTIET+++S++R WE + M KE + R P P P SS +E D +R R
Sbjct: 441 QCLKENDHGVRVVESSTRLVDIPYGDYFSVEDRWTIVPRSSNPNACKVFIELKVVFGKSTFWKKTIETRAISDNRTKWEKWVGMAKEFLDTRDINEAANCVPESP-PTSSTSSEKAVHDAIRKDR 564
BLAST of mRNA_H-elongata_contig13000.2189.1 vs. uniprot
Match: A0A833S7N6_PHYIN (VAD1-like StAR-related lipid transfer domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833S7N6_PHYIN) HSP 1 Score: 70.1 bits (170), Expect = 8.480e-10 Identity = 45/132 (34.09%), Postives = 71/132 (53.79%), Query Frame = 1
Query: 1 RCRLYDEHGI-IIETSTHLEDIMMSDHFHIEDRCVVQPVRD--GAIRVNVEVEIKFLKSTMFRKTIETKSLSESREVWEAFFRMTKEAIRIRQ-------PAFPLPVSSGGNESDD------EDRVRATRER 348
+C +EHG+ ++E+ST L DI D+F +EDR + P A +V +E+++ F KST ++KTIET+++S++R WE + M KE + R + P SS +E +DR TR R
Sbjct: 428 QCLKENEHGVRVVESSTRLVDIPYGDYFSVEDRWTIVPRSSDPNACKVFIELKVVFGKSTFWKKTIETRAISDNRAKWEKWVSMAKEFLDTRDLHEAANCASESAPTSSSSSEKATVHGAMRKDRGPTTRHR 559
BLAST of mRNA_H-elongata_contig13000.2189.1 vs. uniprot
Match: W7TNL4_9STRA (VASt domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNL4_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 7.910e-9 Identity = 32/98 (32.65%), Postives = 61/98 (62.24%), Query Frame = 1
Query: 1 RCRLYDEHGIIIETSTHLEDIMMSDHFHIEDRCVVQPV---------RDGAIRVNVEVEIKFLKSTMFRKTIETKSLSESREVWEAFFRMTKEAIRIR 267
R R++ +HG+++ETS+ +E++ D F +EDR VV+P+ GA+ + E++F+KST+F+K IE++S +++ E +F M ++ + R
Sbjct: 89 RVRVFGQHGMVLETSSSMENVPAGDCFTLEDRWVVRPLPASEAPTRTEAGALSIETSFEVRFVKSTLFKKIIESRSRADTLEYHRRWFEMIEKHVARR 186
BLAST of mRNA_H-elongata_contig13000.2189.1 vs. uniprot
Match: A0A7S2SSK1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSK1_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 1.950e-8 Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 4 CRLYDEHGIIIETSTHLEDIMMSDHFHIEDRCVVQPVR--DGAIRVNVEV--EIKFLKSTMFRKTIETKSLSESREVWEAFFRMTKEAI 258
C+++ GI++ET THLEDI D F++EDR VV P + DG +EV EIK++K T + TIE+K+ S+ E FF + EA+
Sbjct: 55 CQVFVRKGIVVETVTHLEDIPFGDCFNVEDRWVVTPTQLADGTAGTRLEVVFEIKWMKGTWLKGTIESKTKSDMTE----FFTLCTEAM 139
BLAST of mRNA_H-elongata_contig13000.2189.1 vs. uniprot
Match: A0A4D9D7Z9_9STRA (VASt domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7Z9_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 2.560e-8 Identity = 31/97 (31.96%), Postives = 61/97 (62.89%), Query Frame = 1
Query: 1 RCRLYDEHGIIIETSTHLEDIMMSDHFHIEDRCVVQPV--------RDGAIRVNVEVEIKFLKSTMFRKTIETKSLSESREVWEAFFRMTKEAIRIR 267
R R++ +HG+++ETS+ +E++ D F +EDR VV+P+ + A+ + E++F+KST+F+K IE++S +++ E +F M ++ + R
Sbjct: 920 RVRVFGQHGMVLETSSSMENVPAGDCFTLEDRWVVRPLPASEAPTRTEAALSIETSFEVRFVKSTLFKKIIESRSRADTLEYHRRWFEMIEKHVARR 1016
BLAST of mRNA_H-elongata_contig13000.2189.1 vs. uniprot
Match: A0A7S2STC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STC3_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 6.310e-8 Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 4 CRLYDEHGIIIETSTHLEDIMMSDHFHIEDRCVVQPVR--DGAIRVNVEV--EIKFLKSTMFRKTIETKSLSESREVWEAFFRMTKEAI 258
C+++ GI++ET THLEDI D F++EDR VV P + DG +EV EIK++K T + TIE+K+ S+ E FF + EA+
Sbjct: 335 CQVFVRKGIVVETVTHLEDIPFGDCFNVEDRWVVTPTQLADGTAGTRLEVVFEIKWMKGTWLKGTIESKTKSDMTE----FFTLCTEAM 419
BLAST of mRNA_H-elongata_contig13000.2189.1 vs. uniprot
Match: A0A1Z5J9L7_FISSO (VASt domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J9L7_FISSO) HSP 1 Score: 62.8 bits (151), Expect = 2.110e-7 Identity = 29/70 (41.43%), Postives = 47/70 (67.14%), Query Frame = 1
Query: 1 RCRLYDEHGIIIETSTHLEDIMMSDHFHIEDRCVVQPVRDGAIRVNVEVEIKFLKSTMFRKTIETKSLSE 210
+C Y +G++IET T + D+ M+D F++ DR +V+P D I++N+E +I F+KSTMF+ I + SE
Sbjct: 409 KCMRYGNYGMMIETKTIVRDVPMADCFYVTDRLMVKPDGDEKIKLNMEFDITFIKSTMFKGIISKTTTSE 478 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13000.2189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13000.2189.1 >prot_H-elongata_contig13000.2189.1 ID=prot_H-elongata_contig13000.2189.1|Name=mRNA_H-elongata_contig13000.2189.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=292bp RCRLYDEHGIIIETSTHLEDIMMSDHFHIEDRCVVQPVRDGAIRVNVEVEback to top mRNA from alignment at H-elongata_contig13000:566..1953+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13000.2189.1 ID=mRNA_H-elongata_contig13000.2189.1|Name=mRNA_H-elongata_contig13000.2189.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1388bp|location=Sequence derived from alignment at H-elongata_contig13000:566..1953+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13000:566..1953+ >mRNA_H-elongata_contig13000.2189.1 ID=mRNA_H-elongata_contig13000.2189.1|Name=mRNA_H-elongata_contig13000.2189.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1752bp|location=Sequence derived from alignment at H-elongata_contig13000:566..1953+ (Himanthalia elongata Himel1 dioecious)back to top |