mRNA_H-elongata_contig129987.2186.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129987.2186.1
Unique NamemRNA_H-elongata_contig129987.2186.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig129987.2186.1 vs. uniprot
Match: A0A6H5KZJ1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZJ1_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 7.040e-9
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    1 AGFVARIDDTRLPKCVMFREIMGGAGRVEGQEKEWMGCLLEDLKAFGINADQWTIAAQDEGE 186
            AGFV R++D RLPKC++ R + GG G   GQE +W+  L EDL AF +  ++ +   Q+  +
Sbjct:  305 AGFVMRMEDNRLPKCMLLRAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKESGKKQESAK 366
[Close]
BLAST of mRNA_H-elongata_contig129987.2186.1 vs. uniprot
Match: A0A6H5LG55_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG55_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 8.620e-8
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 AGFVARIDDTRLPKCVMFREIMGGAGRVEGQEKEWMGCLLEDLKAFGIN----ADQWTIAAQD 177
            AGFV R++D+RLPK ++   + GG G   GQE +W+  L EDL AF +      D+W  +A+D
Sbjct:  316 AGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFSMGDEMEGDKWKESAKD 378
[Close]
BLAST of mRNA_H-elongata_contig129987.2186.1 vs. uniprot
Match: A0A6H5L2N2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2N2_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.180e-7
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 AGFVARIDDTRLPKCVMFREIMGGAGRVEGQEKEWMGCLLEDLKAFGINADQ----WTIAAQD 177
            AGFV R++D+RLPKC+    + GG G   GQE +W+  L EDL AF +  ++    W  +A++
Sbjct:  315 AGFVMRMEDSRLPKCMPLEAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKN 377
[Close]
BLAST of mRNA_H-elongata_contig129987.2186.1 vs. uniprot
Match: A0A6H5KDV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV9_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.370e-7
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 AGFVARIDDTRLPKCVMFREIMGGAGRVEGQEKEWMGCLLEDLKAFGINAD----QWTIAAQD 177
            AGFV R++D+RLPK ++   + GG G   GQE +W+  L EDL AF +  +    QW  +A+D
Sbjct:  143 AGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGAQWKESAKD 205
[Close]
BLAST of mRNA_H-elongata_contig129987.2186.1 vs. uniprot
Match: A0A6H5JII6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII6_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.010e-7
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 AGFVARIDDTRLPKCVMFREIMGGAGRVEGQEKEWMGCLLEDLKAFGINADQ----WTIAAQD 177
            AGFV R++D+RLPK ++   + GG G   GQE +W+  L EDL AF +  ++    W  +A+D
Sbjct:  377 AGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKASAKD 439
[Close]
BLAST of mRNA_H-elongata_contig129987.2186.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.980e-7
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 AGFVARIDDTRLPKCVMFREIMGGAGRVEGQEKEWMGCLLEDLKAFGINADQ----WTIAAQD 177
            AGFV R++D+RLPK ++   + GG G   GQE +W+  L EDL AF +  ++    W  +A+D
Sbjct:   92 AGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKD 154
[Close]
BLAST of mRNA_H-elongata_contig129987.2186.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.190e-7
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 AGFVARIDDTRLPKCVMFREIMGGAGRVEGQEKEWMGCLLEDLKAFGINADQ----WTIAAQD 177
            AGFV R++D+RLPK ++   + GG G   GQE +W+  L EDL AF ++ ++    W  +A+D
Sbjct:  710 AGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMSDEKEGGKWKESAKD 772
[Close]
BLAST of mRNA_H-elongata_contig129987.2186.1 vs. uniprot
Match: A0A6H5K0C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C0_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 5.430e-7
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 AGFVARIDDTRLPKCVMFREIMGGAGRVEGQEKEWMGCLLEDLKAFGINADQ----WTIAAQD 177
            AGFV R++D+RLPK ++   + GG G   GQE +W+  L EDL AF +  ++    W  +A+D
Sbjct:  240 AGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKD 302
[Close]
BLAST of mRNA_H-elongata_contig129987.2186.1 vs. uniprot
Match: A0A6H5LDM1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDM1_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 5.640e-7
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 AGFVARIDDTRLPKCVMFREIMGGAGRVEGQEKEWMGCLLEDLKAFGINADQ----WTIAAQD 177
            AGFV R++D+RLPK ++   + GG G   GQE +W+  L EDL AF +  ++    W  +A+D
Sbjct:  395 AGFVLRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKD 457
[Close]
BLAST of mRNA_H-elongata_contig129987.2186.1 vs. uniprot
Match: A0A6H5K4Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Q4_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 5.680e-7
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 AGFVARIDDTRLPKCVMFREIMGGAGRVEGQEKEWMGCLLEDLKAFGINADQ----WTIAAQD 177
            AGFV R++D+RLPK ++   + GG G   GQE +W+  L EDL AF +  ++    W  +A+D
Sbjct:  377 AGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKD 439
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129987.2186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZJ1_9PHAE7.040e-941.94Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LG55_9PHAE8.620e-842.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L2N2_9PHAE1.180e-741.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDV9_9PHAE1.370e-742.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JII6_9PHAE3.010e-741.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGF6_9PHAE3.980e-741.27Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE4.190e-741.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0C0_9PHAE5.430e-741.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LDM1_9PHAE5.640e-741.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4Q4_9PHAE5.680e-741.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129987contigH-elongata_contig129987:1664..1852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929772.4735975-CDS-H-elongata_contig129987:1663..18521622929772.4735975-CDS-H-elongata_contig129987:1663..1852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129987 1664..1852 -
1691679151.9622006-CDS-H-elongata_contig129987:1663..18521691679151.9622006-CDS-H-elongata_contig129987:1663..1852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129987 1664..1852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129987.2186.1prot_H-elongata_contig129987.2186.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129987 1664..1852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129987.2186.1

>prot_H-elongata_contig129987.2186.1 ID=prot_H-elongata_contig129987.2186.1|Name=mRNA_H-elongata_contig129987.2186.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
AGFVARIDDTRLPKCVMFREIMGGAGRVEGQEKEWMGCLLEDLKAFGINA
DQWTIAAQDEGE*
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mRNA from alignment at H-elongata_contig129987:1664..1852-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129987.2186.1 ID=mRNA_H-elongata_contig129987.2186.1|Name=mRNA_H-elongata_contig129987.2186.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig129987:1664..1852- (Himanthalia elongata Himel1 dioecious)
GCGGGATTCGTGGCGCGCATCGACGACACGAGACTGCCGAAGTGCGTGAT
GTTCAGAGAAATCATGGGGGGCGCAGGTCGCGTGGAGGGGCAAGAAAAAG
AGTGGATGGGGTGTCTTCTGGAAGATCTCAAAGCTTTCGGTATCAACGCC
GACCAGTGGACGATTGCAGCCCAGGACGAGGGGGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig129987:1664..1852-

>mRNA_H-elongata_contig129987.2186.1 ID=mRNA_H-elongata_contig129987.2186.1|Name=mRNA_H-elongata_contig129987.2186.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig129987:1664..1852- (Himanthalia elongata Himel1 dioecious)
GCGGGATTCGTGGCGCGCATCGACGACACGAGACTGCCGAAGTGCGTGAT
GTTCAGAGAAATCATGGGGGGCGCAGGTCGCGTGGAGGGGCAAGAAAAAG
AGTGGATGGGGTGTCTTCTGGAAGATCTCAAAGCTTTCGGTATCAACGCC
GACCAGTGGACGATTGCAGCCCAGGACGAGGGGGAGTAGGCGGGATTCGT
GGCGCGCATCGACGACACGAGACTGCCGAAGTGCGTGATGTTCAGAGAAA
TCATGGGGGGCGCAGGTCGCGTGGAGGGGCAAGAAAAAGAGTGGATGGGG
TGTCTTCTGGAAGATCTCAAAGCTTTCGGTATCAACGCCGACCAGTGGAC
GATTGCAGCCCAGGACGAGGGGGAGTAG
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