prot_H-elongata_contig129856.2180.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig129856.2180.1
Unique Nameprot_H-elongata_contig129856.2180.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length148
Homology
BLAST of mRNA_H-elongata_contig129856.2180.1 vs. uniprot
Match: A0A6H5JUA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA3_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.220e-42
Identity = 82/151 (54.30%), Postives = 109/151 (72.19%), Query Frame = 0
Query:    1 QDVGSKLKTYVNDEDTAEVNKEVALKDGDRIRVGTASSVCRLRFQELRLCGTQLSKEDKVELRSLAKKAGGKIVAKWDS-RCTHLVTPATFKIVTEKLVLAVAQVKPVVHVQWLEALVDRAKTKPLRATPDTTNFRPVVLRGK--GPFAVK 148
            +DVGSKLKT VN  +T E +KE++LK+GD ++VGT +S+ R+RFQ LR C TQL+ E+K EL++L+K+ GG +  KWD+ +CTHLVT A    VTEKLVLA+  ++PVVHV WL+ LV     KPLR  P+T  F PVV R +  GPF V+
Sbjct:   48 KDVGSKLKTCVNGSETGEAHKEISLKEGDEVKVGTTNSIMRVRFQALRFCATQLTAEEKAELKALSKRCGGAVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLVAGGTAKPLRPVPETAAFGPVVTRSRRQGPFRVR 198          
BLAST of mRNA_H-elongata_contig129856.2180.1 vs. uniprot
Match: D8LKB3_ECTSI (Nibrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB3_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 3.950e-42
Identity = 82/151 (54.30%), Postives = 108/151 (71.52%), Query Frame = 0
Query:    1 QDVGSKLKTYVNDEDTAEVNKEVALKDGDRIRVGTASSVCRLRFQELRLCGTQLSKEDKVELRSLAKKAGGKIVAKWDS-RCTHLVTPATFKIVTEKLVLAVAQVKPVVHVQWLEALVDRAKTKPLRATPDTTNFRPVVLRGK--GPFAVK 148
            +DVGSKLKT VN  +T E +KE++LK+GD ++VGT +S+ R+RFQ LR C TQL+ E+K EL++L+KK GG +  KWD+ +CTHLVT A    VTEKLVLA+  ++PVVHV WL+ L      KPLR  P+T  F PVV R +  GPF V+
Sbjct:   48 KDVGSKLKTCVNGSETGETHKEISLKEGDEVKVGTTNSIMRVRFQALRFCATQLTAEEKAELKALSKKCGGAVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLAAGGTAKPLRPVPETEAFGPVVTRSRRQGPFRVR 198          
BLAST of mRNA_H-elongata_contig129856.2180.1 vs. uniprot
Match: D8S3C6_SELML (FHA domain-containing protein n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S3C6_SELML)

HSP 1 Score: 62.8 bits (151), Expect = 1.180e-8
Identity = 43/133 (32.33%), Postives = 66/133 (49.62%), Query Frame = 0
Query:   21 KEVALKDGDRIRVGTASSVCRLRFQELRLCGTQ------LSKED---------KVELRSLAKKAGGKIVAKWDSRCTHLVTPATFKIVTEKLVLAVAQVKPVVHVQWLEALVDRAKTKPLRATPDTTNFRPVV 138
            KE  +KDGD I  GT SS  R  ++    C +       +SK +         KVEL+S     G + V KWD  CTHL+      + TE +++A +Q KPVV ++WLE +       P++  P  +++ P +
Sbjct:   98 KEAPVKDGDEITFGTGSSTFRATYEHFFFCVSASQARNVISKANTAFGKVFLKKVELKSGVIIQGARCVEKWDEECTHLLVEDGSSV-TEMVLMAASQQKPVVSLKWLENVASSGG--PVQEIPKCSSYTPTL 227          
BLAST of mRNA_H-elongata_contig129856.2180.1 vs. uniprot
Match: UPI0018CF3656 (nibrin-like n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CF3656)

HSP 1 Score: 61.2 bits (147), Expect = 3.890e-8
Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 0
Query:    1 QDVGSKLKTYVND--EDTAEVNK--EVALKDGDRIRVGTASSVCRLRFQELRLCGTQLSKEDKVELRSLAKKAGGKIVAKWDSRCTHLVTPATFKIVTEKLVLAVAQVKPVVHVQWLEALVDRAKTKPLRAT-PDTTNFRPV 137
            +D+GSK  T++N+  E++ ++N+  +  L DGDR+R G   ++  +    +    + LS  D   L       GGK+V KWD +CTHL T   F++ T K + A+ + +P+V + +    VD A+    R+T P    ++P+
Sbjct:   59 EDIGSKYGTFINENIENSVKLNQGEQQELSDGDRVRFGVFKNIWHVSHAPIISAISGLSSGDAKILEHYMSILGGKLVDKWDMKCTHL-TMKEFRL-TVKALHALVEQRPIVTLDYWRNFVDAARRG--RSTLPQPNEYKPI 196          
BLAST of mRNA_H-elongata_contig129856.2180.1 vs. uniprot
Match: UPI0018CED9C9 (nibrin-like isoform X1 n=2 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CED9C9)

HSP 1 Score: 61.2 bits (147), Expect = 4.160e-8
Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 0
Query:    1 QDVGSKLKTYVND--EDTAEVNK--EVALKDGDRIRVGTASSVCRLRFQELRLCGTQLSKEDKVELRSLAKKAGGKIVAKWDSRCTHLVTPATFKIVTEKLVLAVAQVKPVVHVQWLEALVDRAKTKPLRAT-PDTTNFRPV 137
            +D+GSK  T++N+  E++ ++N+  +  L DGDR+R G   ++  +    +    + LS  D   L       GGK+V KWD +CTHL T   F++ T K + A+ + +P+V + +    VD A+    R+T P    ++P+
Sbjct:   59 EDIGSKYGTFINENIENSVKLNQGEQQELSDGDRVRFGVFKNIWHVSHAPIISAISGLSSGDAKILEHYMSILGGKLVDKWDMKCTHL-TMKEFRL-TVKALHALVEQRPIVTLDYWRNFVDAARRG--RSTLPQPNEYKPI 196          
BLAST of mRNA_H-elongata_contig129856.2180.1 vs. uniprot
Match: UPI0018CC859B (nibrin-like n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CC859B)

HSP 1 Score: 61.2 bits (147), Expect = 4.360e-8
Identity = 46/142 (32.39%), Postives = 77/142 (54.23%), Query Frame = 0
Query:    1 QDVGSKLKTYVND--EDTAEVN--KEVALKDGDRIRVGTASSVCRLRFQELRLCGTQLSKEDKVELRSLAKKAGGKIVAKWDSRCTHLVTPATFKIVTEKLVLAVAQVKPVVHVQWLEALVDRAKTKPLRAT-PDTTNFRPV 137
            +DVGSK  T++N+  E+  ++N  K+  L DGDRIR G   ++  +    +    + LS  D   +       GGK+V KWD++CTHL T   F++ T K + A+ + +P+V + +    VD A+    R+T P    ++P+
Sbjct:   61 EDVGSKYGTFINENIENGIKLNQGKQQELSDGDRIRFGVFKNIWHVSHVPIISAISGLSSGDAKIMEHYMSFFGGKLVDKWDTKCTHL-TMKEFRL-TVKALHALVEQRPIVTLDYWRNFVDAARRG--RSTLPQPNEYKPI 198          
BLAST of mRNA_H-elongata_contig129856.2180.1 vs. uniprot
Match: UPI0018CCC911 (nibrin-like n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CCC911)

HSP 1 Score: 60.8 bits (146), Expect = 5.780e-8
Identity = 46/142 (32.39%), Postives = 77/142 (54.23%), Query Frame = 0
Query:    1 QDVGSKLKTYVND--EDTAEVN--KEVALKDGDRIRVGTASSVCRLRFQELRLCGTQLSKEDKVELRSLAKKAGGKIVAKWDSRCTHLVTPATFKIVTEKLVLAVAQVKPVVHVQWLEALVDRAKTKPLRAT-PDTTNFRPV 137
            +DVGSK  T++N+  E+  ++N  K+  L DGDRIR G   ++  +    +    + LS  D   +       GGK+V KWD++CTHL T   F++ T K + A+ + +P+V + +    VD A+    R+T P    ++P+
Sbjct:   61 EDVGSKYGTFINENIENGIKLNQGKQQELSDGDRIRFGIFKNIWHVSHVPIISAISGLSSGDAKIMEHYMSFFGGKLVDKWDTKCTHL-TMKEFRL-TVKALHALVEQRPIVTLDYWRNFVDAARRG--RSTLPQPNEYKPI 198          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129856.2180.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JUA3_9PHAE1.220e-4254.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKB3_ECTSI3.950e-4254.30Nibrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
D8S3C6_SELML1.180e-832.33FHA domain-containing protein n=5 Tax=Selaginella ... [more]
UPI0018CF36563.890e-830.99nibrin-like n=1 Tax=Teleopsis dalmanni TaxID=13964... [more]
UPI0018CED9C94.160e-830.99nibrin-like isoform X1 n=2 Tax=Teleopsis dalmanni ... [more]
UPI0018CC859B4.360e-832.39nibrin-like n=1 Tax=Teleopsis dalmanni TaxID=13964... [more]
UPI0018CCC9115.780e-832.39nibrin-like n=1 Tax=Teleopsis dalmanni TaxID=13964... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 41..120
e-value: 3.4E-7
score: 39.9
IPR001357BRCT domainPFAMPF00533BRCTcoord: 52..116
e-value: 8.1E-8
score: 32.5
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 49..121
score: 10.307
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190coord: 45..127
e-value: 3.7E-15
score: 58.1
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 43..122
NoneNo IPR availableGENE3D2.60.200.20coord: 1..44
e-value: 1.9E-5
score: 26.3
IPR040227Nibrin-relatedPANTHERPTHR12162NIBRIN-RELATEDcoord: 2..136
IPR008984SMAD/FHA domain superfamilySUPERFAMILY49879SMAD/FHA domaincoord: 2..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129856contigH-elongata_contig129856:238..1847 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129856.2180.1mRNA_H-elongata_contig129856.2180.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig129856 238..1847 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig129856.2180.1 ID=prot_H-elongata_contig129856.2180.1|Name=mRNA_H-elongata_contig129856.2180.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
QDVGSKLKTYVNDEDTAEVNKEVALKDGDRIRVGTASSVCRLRFQELRLC
GTQLSKEDKVELRSLAKKAGGKIVAKWDSRCTHLVTPATFKIVTEKLVLA
VAQVKPVVHVQWLEALVDRAKTKPLRATPDTTNFRPVVLRGKGPFAVK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
IPR036420BRCT_dom_sf
IPR040227Nibrin-rel
IPR008984SMAD_FHA_dom_sf