mRNA_H-elongata_contig129836.2176.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129836.2176.1
Unique NamemRNA_H-elongata_contig129836.2176.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129836.2176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129836contigH-elongata_contig129836:1097..1855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size759
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129836.2176.1prot_H-elongata_contig129836.2176.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129836 1228..1647 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929771.4212823-UTR-H-elongata_contig129836:1096..12271622929771.4212823-UTR-H-elongata_contig129836:1096..1227Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129836 1097..1227 +
1691679151.463885-UTR-H-elongata_contig129836:1096..12271691679151.463885-UTR-H-elongata_contig129836:1096..1227Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129836 1097..1227 +
1622929771.450429-UTR-H-elongata_contig129836:1647..18551622929771.450429-UTR-H-elongata_contig129836:1647..1855Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129836 1648..1855 +
1691679151.4814534-UTR-H-elongata_contig129836:1647..18551691679151.4814534-UTR-H-elongata_contig129836:1647..1855Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129836 1648..1855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929771.4339092-CDS-H-elongata_contig129836:1227..16471622929771.4339092-CDS-H-elongata_contig129836:1227..1647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129836 1228..1647 +
1691679151.4729762-CDS-H-elongata_contig129836:1227..16471691679151.4729762-CDS-H-elongata_contig129836:1227..1647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129836 1228..1647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129836.2176.1

>prot_H-elongata_contig129836.2176.1 ID=prot_H-elongata_contig129836.2176.1|Name=mRNA_H-elongata_contig129836.2176.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
MAKDSNTLRCVPTPTSVSVCVCQCQCQCTHIYRKHCNPKTGSDRRRVSWS
AASFSYFWFSFLPSFLDYLCILCINNKSHGSWKLTMVITSPQNGVPLFSR
LVPKTTGKHAGATPTLQCKEAFFVFDHPATGLKTHDTYR*
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mRNA from alignment at H-elongata_contig129836:1097..1855+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129836.2176.1 ID=mRNA_H-elongata_contig129836.2176.1|Name=mRNA_H-elongata_contig129836.2176.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=759bp|location=Sequence derived from alignment at H-elongata_contig129836:1097..1855+ (Himanthalia elongata Himel1 dioecious)
AAAAAATTGGCACCCAACTCCAAACATAAACGCTACAACAACAGCCAATT
TTCACCGTCACTAATAATGTCTTATCTTCCTCCCGGGGGCGGCCGAGGAA
GGGCAGGAATAGAAACAGCGCACACAGCAGCATGGCAAAAGACTCTAACA
CACTGCGATGCGTGCCAACACCTACCAGTGTCAGTGTTTGTGTGTGCCAG
TGCCAGTGTCAGTGTACACATATATACCGAAAACATTGCAACCCCAAGAC
GGGCTCCGATCGGCGACGGGTGTCTTGGTCTGCTGCATCTTTTAGTTATT
TTTGGTTCTCCTTCCTTCCTTCCTTCCTTGACTACCTGTGTATACTGTGT
ATAAATAACAAATCACACGGTAGCTGGAAGCTCACGATGGTCATCACCTC
TCCGCAAAACGGTGTCCCACTCTTCTCTCGCCTGGTACCAAAAACCACCG
GAAAACACGCCGGGGCAACTCCCACTCTTCAGTGTAAGGAGGCTTTTTTT
GTCTTCGACCACCCGGCGACAGGACTCAAGACTCATGATACCTACCGGTA
GTTGCAAGTACCACATCGTTCCCTAAACATTTGACTTTCGAACGCCGTCC
AACGGCCGTCCAACGGAAAAGGGAATCCCATCTTAGAAGCATTGATGAAC
CATACAAACGGTAAAGGGGATCCCCCACCACAGCTACCCTGGGGGAAACG
CTAGACGGAAAATTAGGAGGGGAGAATATAATGTTGAAATACGGCGAAAA
GACCATTAC
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Coding sequence (CDS) from alignment at H-elongata_contig129836:1097..1855+

>mRNA_H-elongata_contig129836.2176.1 ID=mRNA_H-elongata_contig129836.2176.1|Name=mRNA_H-elongata_contig129836.2176.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig129836:1097..1855+ (Himanthalia elongata Himel1 dioecious)
ATGGCAAAAGACTCTAACACACTGCGATGCGTGCCAACACCTACCAGTGT
CAGTGTTTGTGTGTGCCAGTGCCAGTGTCAGTGTACACATATATACCGAA
AACATTGCAACCCCAAGACGGGCTCCGATCGGCGACGGGTGTCTTGGTCT
GCTGCATCTTTTAGTTATTTTTGGTTCTCCTTCCTTCCTTCCTTCCTTGA
CTACCTGTGTATACTGTGTATAAATAACAAATCACACGGTAGCTGGAAGC
TCACGATGGTCATCACCTCTCCGCAAAACGGTGTCCCACTCTTCTCTCGC
CTGGTACCAAAAACCACCGGAAAACACGCCGGGGCAACTCCCACTCTTCA
GTGTAAGGAGGCTTTTTTTGTCTTCGACCACCCGGCGACAGGACTCAAGA
CTCATGATACCTACCGGTAGATGGCAAAAGACTCTAACACACTGCGATGC
GTGCCAACACCTACCAGTGTCAGTGTTTGTGTGTGCCAGTGCCAGTGTCA
GTGTACACATATATACCGAAAACATTGCAACCCCAAGACGGGCTCCGATC
GGCGACGGGTGTCTTGGTCTGCTGCATCTTTTAGTTATTTTTGGTTCTCC
TTCCTTCCTTCCTTCCTTGACTACCTGTGTATACTGTGTATAAATAACAA
ATCACACGGTAGCTGGAAGCTCACGATGGTCATCACCTCTCCGCAAAACG
GTGTCCCACTCTTCTCTCGCCTGGTACCAAAAACCACCGGAAAACACGCC
GGGGCAACTCCCACTCTTCAGTGTAAGGAGGCTTTTTTTGTCTTCGACCA
CCCGGCGACAGGACTCAAGACTCATGATACCTACCGGTAG
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