prot_H-elongata_contig129762.2170.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig129762.2170.1
Unique Name	prot_H-elongata_contig129762.2170.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	111

Homology

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BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 4.030e-45
Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 0

Query:    1 MVATQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 101
            MVATQ+F+G+AA+LIASS AFVAPMA+RS APASSSS    SAGS YV TLPGAPFGDGKIFDPL LSDGA P +IKKWREAEIKHGRVAMLA+LG+LVAE
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAE 101

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BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 5.180e-44
Identity = 81/101 (80.20%), Postives = 90/101 (89.11%), Query Frame = 0

Query:    1 MVATQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 101
            MVA+QMF+GTAA+LIASS AFVAP+A+RS APAS++S    SAGS YV TLPGAPF DGKIFDPL LSDGAAP +IKKWREAEIKHGRVAMLA+LGILVAE
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAE 101

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BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: A0A6H5JYI8_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.430e-43
Identity = 79/101 (78.22%), Postives = 88/101 (87.13%), Query Frame = 0

Query:    1 MVATQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 101
            MVA+QMF+GTAA+LIASS AFV PMA+RS+A   SSS    SAGS YV TLPGAPF DGKIFDPLGLSDGAAP +IKKWREAEIKHGRVAMLA+LG++VAE
Sbjct:    1 MVASQMFIGTAATLIASSTAFVGPMAMRSVASTPSSSGFKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE 101

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BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 9.520e-43
Identity = 79/105 (75.24%), Postives = 89/105 (84.76%), Query Frame = 0

Query:    1 MVATQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAEVRAW 105
            MVA+QMF+GTAA+LIASS AFVAPMA+RS+    SS     SAGS YV TLPGAPF DGKIFDPLGLSDGAAP +IKKWREAEIKHGRVAMLA+LG++VAE  A+
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEFWAF 105

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BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 7.130e-41
Identity = 76/98 (77.55%), Postives = 84/98 (85.71%), Query Frame = 0

Query:    4 TQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 101
            + MF+GTAA+LIASS AFVAPMA+RS APASS+S    SAGS YV TLPGAPFGDGKIFDPL LSDGA P EIK WREAEIKHGRVAMLA +G++VAE
Sbjct:    5 SNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAE 102

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BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 2.620e-32
Identity = 68/98 (69.39%), Postives = 80/98 (81.63%), Query Frame = 0

Query:    4 TQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 101
            + MF+GTAA+LIASSAAFV PMA+RS APASS+S    SAG+ Y+ TLPGA   +GKIFD L L+DGA P EIK WREAEIKHGRVAMLA +G++VAE
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAE 99

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BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.630e-30
Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = 0

Query:    1 MVATQMFVGTAASLIASSAAFVAPMAI--RSLAPASSSSLKMQSAGSAYVETLPGAPFG---DGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAEV 102
            MV +Q+F+GTAA+LIASSAAFVAP+A    S+A  ++SS    +AGS Y  +LPGAPFG   +GK FDP GL+    PE IKKWREAE+KHGRV+MLAA+GILV+EV
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEV 107

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BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.870e-29
Identity = 80/167 (47.90%), Postives = 91/167 (54.49%), Query Frame = 0

Query:    1 MVATQMFVGTAASLIASSAAFVAPMAIRSLAPAS-SSSLKMQSAGSAYVETLPGAPFGDGK-----------------------------------------------------------------IFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 101
            MVA+QMF+GTAA+LIASS AFVAP+A+RS+A  + SSS  M SAGS YV TLPGAPF DGK                                                                 IFDPLGLSDGAAP +IKKWREAEIKHGRVAMLA+LG++VAE
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE 167

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BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 8.460e-26
Identity = 59/98 (60.20%), Postives = 72/98 (73.47%), Query Frame = 0

Query:    4 TQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 101
            T   VG A+   AS  AF+ P      A  +S++ +M SAGS YV TLPGAPF DGK++DP+GLS  A PE+IKKWREAEIKHGRVAMLA++G+LVAE
Sbjct:   56 TGALVGMASWCFASCEAFIVPTPTTLSARPTSTAARM-SAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAE 152

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BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: A0A061SPG6_9CHLO (Chlorophyll a-b binding protein, chloroplastic n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SPG6_9CHLO)

HSP 1 Score: 84.3 bits (207), Expect = 1.220e-17
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 0

Query:   21 FVAPMAIRSLAPASSSSLKMQ-SAGSAYVETLPG--APFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 101
            F+ P + R+ A +  S+++ Q SAG+ YV+TLPG  APF D   FDPL +S+GA+P++IK+WREAE+ HGRV+MLAALG +V E
Sbjct:   11 FLRPSSCRNXARSRRSTVRPQASAGTEYVKTLPGISAPFDD-PYFDPLKISEGASPDDIKRWREAELTHGRVSMLAALGFIVGE 93

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot

BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7Q6_ECTSI	4.030e-45	81.19	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	5.180e-44	80.20	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A6H5JYI8_9PHAE	2.430e-43	78.22	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5K8D0_9PHAE	9.520e-43	75.24	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
D7G7S1_ECTSI	7.130e-41	77.55	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	2.620e-32	69.39	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7FQG7_ECTSI	1.630e-30	62.62	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A6H5JWB4_9PHAE	1.870e-29	47.90	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G5B4_ECTSI	8.460e-26	60.20	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A061SPG6_9CHLO	1.220e-17	54.76	Chlorophyll a-b binding protein, chloroplastic n=1...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 43..110 e-value: 2.8E-16 score: 61.9
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 50..102 e-value: 6.7E-16 score: 59.2
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 9..100
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..31
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 87..106
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 32..86
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 107..110
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..20 score: 0.454
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 53..107
None	No IPR available	TMHMM	TMhelix		coord: 7..29
None	No IPR available	TMHMM	TMhelix		coord: 87..109
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 9..100

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig129762	contig	H-elongata_contig129762:51..1021 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig129762.2170.1	mRNA_H-elongata_contig129762.2170.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig129762 51..1021 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig129762.2170.1 ID=prot_H-elongata_contig129762.2170.1|Name=mRNA_H-elongata_contig129762.2170.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MVATQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVET
LPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVA
EVRAWINLFF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln