mRNA_H-elongata_contig102468.217.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102468.217.1
Unique NamemRNA_H-elongata_contig102468.217.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A6H5L3X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X7_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 3.280e-57
Identity = 97/120 (80.83%), Postives = 106/120 (88.33%), Query Frame = 1
Query:   10 TVARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVNDSRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369
            T  RGGGYGLDAELA +REANYD      AQEWIE +T E FA+ FGEEL++GR+LC+LIN IKPGAVRRVNDSRMPFKQMEN+SNFLKACRAVGVAEHSLFETVDL+EGKDLGLVVRCL
Sbjct:  339 TGGRGGGYGLDAELAARREANYDXXXXXXAQEWIEDVTGERFAEGFGEELKDGRKLCLLINQIKPGAVRRVNDSRMPFKQMENVSNFLKACRAVGVAEHSLFETVDLYEGKDLGLVVRCL 458          
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: D7FJ16_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ16_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 2.390e-52
Identity = 84/118 (71.19%), Postives = 99/118 (83.90%), Query Frame = 1
Query:   16 ARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVNDSRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369
            ARG GYGLDAELA +REA YDH AE  A+ WIE +T E     FG+ LR+G  +C L+N IKPGAVR++N+SRMPFKQMENISNFLK+CRA+GVAEHSLFETVDL+EGKD+GLVVRC+
Sbjct:    6 ARGAGYGLDAELARQREAKYDHSAEDQARAWIEAVTGERVVGPFGDALRDGVVICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCI 123          
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A835ZHQ8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ8_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.490e-48
Identity = 80/119 (67.23%), Postives = 93/119 (78.15%), Query Frame = 1
Query:   13 VARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVNDSRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369
            V RGGGYGLDAELA K  A YD   E+ AQEW+E +T   F   F   L++G  LC LINAIKPG ++R+N S+MPFKQMENISNFLKACR +GVAE+SLFETVDLFE KD+GLV+RCL
Sbjct:    2 VGRGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCL 120          
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A836CGB8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB8_9STRA)

HSP 1 Score: 160 bits (404), Expect = 4.570e-47
Identity = 77/118 (65.25%), Postives = 92/118 (77.97%), Query Frame = 1
Query:   16 ARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVNDSRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369
            ARGGGYGLDAELA K  ANYD+  E  AQEWIE +TR  F   F   L++G  LC L+NAI+PG V+++N S MPFKQMENIS +LK CRA+GVAEHSLFETVDL+E KD+ LV++CL
Sbjct:    4 ARGGGYGLDAELARKAAANYDYAGEHAAQEWIEAVTRVKFEGTFAAALKDGSVLCKLLNAIRPGTVKKINTSSMPFKQMENISAYLKGCRALGVAEHSLFETVDLYEEKDISLVIKCL 121          
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A7R9YD67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD67_9STRA)

HSP 1 Score: 157 bits (396), Expect = 7.490e-44
Identity = 78/123 (63.41%), Postives = 98/123 (79.67%), Query Frame = 1
Query:    1 APVTVARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVNDSRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369
            APV+ ARGGGYGLDA+LA+ R   YD+  E + +EWIE +T E F   FGE L++GR LC LINAIKPG++R +N S++PFKQMEN+S FL+ CRA+GVAEH LFETVDL+E KDLG+VV C+
Sbjct:  285 APVS-ARGGGYGLDAQLAQIRLDKYDYDLEAEVKEWIEAVTGEAFPGGFGESLKDGRILCKLINAIKPGSIRIINTSKLPFKQMENVSVFLRNCRALGVAEHDLFETVDLYELKDLGVVVNCI 406          
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A2D4CAP3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAP3_PYTIN)

HSP 1 Score: 142 bits (357), Expect = 2.500e-38
Identity = 72/119 (60.50%), Postives = 86/119 (72.27%), Query Frame = 1
Query:   16 ARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVND-SRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369
            ARGGGYGLDAELA++    YD+  E +A++WIE +T       FGE LR+G  LC L N I PG +RR+   S+MPFK MEN+S FLKACR +GV E+ LFETVDLFE K LGLVVRCL
Sbjct:    8 ARGGGYGLDAELAQRAAEKYDYEMEDEARQWIEAITGREIGASFGEGLRDGVILCELANKIHPGVIRRIETKSKMPFKLMENVSAFLKACRTIGVNEYELFETVDLFELKXLGLVVRCL 126          
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A024G6R3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6R3_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.400e-37
Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = 1
Query:   19 RGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVN-DSRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369
            RGGGYGLDAELA++    YD+  E+DAQ+W+E +T     D FGE L++G  LC L+N I PG V R+   S++ F+ MEN+SNFLKACR +GV+E  LFETVDLFE KDLGLVVRCL
Sbjct:    9 RGGGYGLDAELAQRATERYDYGMEKDAQDWVESITGLQIGDSFGEGLKDGVILCNLVNKIHPGIVPRIEVKSKIKFRLMENVSNFLKACRTIGVSEFDLFETVDLFELKDLGLVVRCL 126          
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A8K1CMC3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMC3_PYTOL)

HSP 1 Score: 142 bits (359), Expect = 3.900e-37
Identity = 75/123 (60.98%), Postives = 91/123 (73.98%), Query Frame = 1
Query:    4 PVTVARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVND-SRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369
            PV V RGGGYGLDAELA++    YD+  E +A+ W+E +T     D+FGE LR+G  LC L+N I PG V+RV   S+MPFK MEN+S FL+ACRA+GV E  LFETVDLFE KDLGLVVRC+
Sbjct:    4 PVKV-RGGGYGLDAELAKRAAERYDYDLEDEARYWVEEITGMEIGDDFGEGLRDGVILCELVNKIHPGVVKRVETKSKMPFKLMENVSGFLRACRAMGVNEFELFETVDLFELKDLGLVVRCI 125          
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A7S1U3T7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3T7_9STRA)

HSP 1 Score: 134 bits (338), Expect = 6.140e-37
Identity = 62/91 (68.13%), Postives = 76/91 (83.52%), Query Frame = 1
Query:   97 AQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVNDSRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369
            AQ+WIE LT E F   FGE L++GR LC+ INAIKPG +RRVN S++PFKQMEN+S FL++CR +GVAEH LFETVDL+E KDLGLVV+C+
Sbjct:    2 AQQWIEELTGEAFPGGFGESLKDGRLLCLTINAIKPGTIRRVNASKLPFKQMENVSTFLRSCRTLGVAEHDLFETVDLYELKDLGLVVQCI 92          
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A5D6XYZ9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYZ9_9STRA)

HSP 1 Score: 140 bits (352), Expect = 8.960e-37
Identity = 71/123 (57.72%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    4 PVTVARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVND-SRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369
            P    RGGGYGLDAELA +    YD+  E +A++WIE +  +   ++FGE LR+G  LC L+NAI PG V RV   S+MPFK MEN+S FL+ACR +GV E  LFETVDLFE KDLG VVRC+
Sbjct:    4 PPVQTRGGGYGLDAELARRAAERYDYEMEDEARDWIEAVAHKDIGEDFGEGLRDGVVLCALVNAIHPGIVPRVETKSKMPFKLMENVSAFLRACRKIGVNEFDLFETVDLFELKDLGHVVRCI 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3X7_9PHAE3.280e-5780.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ16_ECTSI2.390e-5271.19Calponin-homology (CH) domain-containing protein n... [more]
A0A835ZHQ8_9STRA1.490e-4867.23Calponin homology domain-containing protein n=1 Ta... [more]
A0A836CGB8_9STRA4.570e-4765.25Calponin homology domain-containing protein n=1 Ta... [more]
A0A7R9YD67_9STRA7.490e-4463.41Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A2D4CAP3_PYTIN2.500e-3860.50Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A024G6R3_9STRA1.400e-3760.17Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A8K1CMC3_PYTOL3.900e-3760.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1U3T7_9STRA6.140e-3768.13Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5D6XYZ9_9STRA8.960e-3757.72Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102468contigH-elongata_contig102468:93..464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.7
Seed ortholog evalue1.7e-42
Seed eggNOG ortholog2880.D7FJ16
Preferred nameSCP1
KEGG koko:K20526
GOsGO:0000278,GO:0000281,GO:0000910,GO:0001300,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007568,GO:0007569,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0022402,GO:0030029,GO:0030036,GO:0030479,GO:0030674,GO:0030863,GO:0030864,GO:0032502,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044877,GO:0048869,GO:0051015,GO:0051301,GO:0051764,GO:0060090,GO:0061640,GO:0061645,GO:0071840,GO:0071944,GO:0097435,GO:0099568,GO:1903047
EggNOG free text desc.actin binding
EggNOG OGsCOG5199@1,KOG2046@2759
Ec32 orthologEc-07_004790.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCalponin homology domain
Ec32 orthologEc-01_004810.1
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.6307957-CDS-H-elongata_contig102468:92..4641622929562.6307957-CDS-H-elongata_contig102468:92..464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102468 93..464 -
1691679071.4753194-CDS-H-elongata_contig102468:92..4641691679071.4753194-CDS-H-elongata_contig102468:92..464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102468 93..464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102468.217.1prot_H-elongata_contig102468.217.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102468 93..464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102468.217.1

>prot_H-elongata_contig102468.217.1 ID=prot_H-elongata_contig102468.217.1|Name=mRNA_H-elongata_contig102468.217.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
APVTVARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFG
EELRNGRRLCMLINAIKPGAVRRVNDSRMPFKQMENISNFLKACRAVGVA
EHSLFETVDLFEGKDLGLVVRCLV
back to top

mRNA from alignment at H-elongata_contig102468:93..464-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102468.217.1 ID=mRNA_H-elongata_contig102468.217.1|Name=mRNA_H-elongata_contig102468.217.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig102468:93..464- (Himanthalia elongata Himel1 dioecious)
GCCCCGGTGACGGTCGCGAGGGGTGGGGGGTACGGCCTGGATGCAGAACT GGCAGAGAAGCGAGAGGCGAACTACGACCATCGGGCGGAGCAAGATGCGC AGGAGTGGATCGAAGTCCTCACCAGGGAGCCCTTCGCCGATGAGTTTGGC GAGGAGCTGCGCAACGGGCGTCGACTGTGTATGCTGATCAATGCCATCAA GCCCGGTGCTGTCCGCAGGGTGAACGACTCTCGAATGCCCTTCAAGCAGA TGGAGAACATATCTAATTTTTTAAAGGCCTGTCGAGCCGTGGGCGTCGCA GAGCATTCCCTATTCGAGACGGTGGATCTCTTCGAAGGGAAAGACCTCGG CCTCGTCGTGCGGTGTCTGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig102468:93..464-

>mRNA_H-elongata_contig102468.217.1 ID=mRNA_H-elongata_contig102468.217.1|Name=mRNA_H-elongata_contig102468.217.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig102468:93..464- (Himanthalia elongata Himel1 dioecious)
GCCCCGGTGACGGTCGCGAGGGGTGGGGGGTACGGCCTGGATGCAGAACT
GGCAGAGAAGCGAGAGGCGAACTACGACCATCGGGCGGAGCAAGATGCGC
AGGAGTGGATCGAAGTCCTCACCAGGGAGCCCTTCGCCGATGAGTTTGGC
GAGGAGCTGCGCAACGGGCGTCGACTGTGTATGCTGATCAATGCCATCAA
GCCCGGTGCTGTCCGCAGGGTGAACGACTCTCGAATGCCCTTCAAGCAGA
TGGAGAACATATCTAATTTTTTAAAGGCCTGTCGAGCCGTGGGCGTCGCA
GAGCATTCCCTATTCGAGACGGTGGATCTCTTCGAAGGGAAAGACCTCGG
CCTCGTCGTGCGGTGTCTGGTGGCCCCGGTGACGGTCGCGAGGGGTGGGG
GGTACGGCCTGGATGCAGAACTGGCAGAGAAGCGAGAGGCGAACTACGAC
CATCGGGCGGAGCAAGATGCGCAGGAGTGGATCGAAGTCCTCACCAGGGA
GCCCTTCGCCGATGAGTTTGGCGAGGAGCTGCGCAACGGGCGTCGACTGT
GTATGCTGATCAATGCCATCAAGCCCGGTGCTGTCCGCAGGGTGAACGAC
TCTCGAATGCCCTTCAAGCAGATGGAGAACATATCTAATTTTTTAAAGGC
CTGTCGAGCCGTGGGCGTCGCAGAGCATTCCCTATTCGAGACGGTGGATC
TCTTCGAAGGGAAAGACCTCGGCCTCGTCGTGCGGTGTCTGGTG
back to top