mRNA_H-elongata_contig129762.2170.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129762.2170.1
Unique NamemRNA_H-elongata_contig129762.2170.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 4.030e-45
Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 1
Query:    1 MVATQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 303
            MVATQ+F+G+AA+LIASS AFVAPMA+RS APASSSS    SAGS YV TLPGAPFGDGKIFDPL LSDGA P +IKKWREAEIKHGRVAMLA+LG+LVAE
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAE 101          
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 5.180e-44
Identity = 81/101 (80.20%), Postives = 90/101 (89.11%), Query Frame = 1
Query:    1 MVATQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 303
            MVA+QMF+GTAA+LIASS AFVAP+A+RS APAS++S    SAGS YV TLPGAPF DGKIFDPL LSDGAAP +IKKWREAEIKHGRVAMLA+LGILVAE
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAE 101          
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: A0A6H5JYI8_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.430e-43
Identity = 79/101 (78.22%), Postives = 88/101 (87.13%), Query Frame = 1
Query:    1 MVATQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 303
            MVA+QMF+GTAA+LIASS AFV PMA+RS+A   SSS    SAGS YV TLPGAPF DGKIFDPLGLSDGAAP +IKKWREAEIKHGRVAMLA+LG++VAE
Sbjct:    1 MVASQMFIGTAATLIASSTAFVGPMAMRSVASTPSSSGFKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE 101          
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 9.520e-43
Identity = 79/105 (75.24%), Postives = 89/105 (84.76%), Query Frame = 1
Query:    1 MVATQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAEVRAW 315
            MVA+QMF+GTAA+LIASS AFVAPMA+RS+    SS     SAGS YV TLPGAPF DGKIFDPLGLSDGAAP +IKKWREAEIKHGRVAMLA+LG++VAE  A+
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEFWAF 105          
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 7.130e-41
Identity = 76/98 (77.55%), Postives = 84/98 (85.71%), Query Frame = 1
Query:   10 TQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 303
            + MF+GTAA+LIASS AFVAPMA+RS APASS+S    SAGS YV TLPGAPFGDGKIFDPL LSDGA P EIK WREAEIKHGRVAMLA +G++VAE
Sbjct:    5 SNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAE 102          
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 2.620e-32
Identity = 68/98 (69.39%), Postives = 80/98 (81.63%), Query Frame = 1
Query:   10 TQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 303
            + MF+GTAA+LIASSAAFV PMA+RS APASS+S    SAG+ Y+ TLPGA   +GKIFD L L+DGA P EIK WREAEIKHGRVAMLA +G++VAE
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAE 99          
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.630e-30
Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 MVATQMFVGTAASLIASSAAFVAPMAI--RSLAPASSSSLKMQSAGSAYVETLPGAPFG---DGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAEV 306
            MV +Q+F+GTAA+LIASSAAFVAP+A    S+A  ++SS    +AGS Y  +LPGAPFG   +GK FDP GL+    PE IKKWREAE+KHGRV+MLAA+GILV+EV
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEV 107          
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.870e-29
Identity = 80/167 (47.90%), Postives = 91/167 (54.49%), Query Frame = 1
Query:    1 MVATQMFVGTAASLIASSAAFVAPMAIRSLAPAS-SSSLKMQSAGSAYVETLPGAPFGDGK-----------------------------------------------------------------IFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 303
            MVA+QMF+GTAA+LIASS AFVAP+A+RS+A  + SSS  M SAGS YV TLPGAPF DGK                                                                 IFDPLGLSDGAAP +IKKWREAEIKHGRVAMLA+LG++VAE
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE 167          
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 8.460e-26
Identity = 59/98 (60.20%), Postives = 72/98 (73.47%), Query Frame = 1
Query:   10 TQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 303
            T   VG A+   AS  AF+ P      A  +S++ +M SAGS YV TLPGAPF DGK++DP+GLS  A PE+IKKWREAEIKHGRVAMLA++G+LVAE
Sbjct:   56 TGALVGMASWCFASCEAFIVPTPTTLSARPTSTAARM-SAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAE 152          
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Match: A0A061SPG6_9CHLO (Chlorophyll a-b binding protein, chloroplastic n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SPG6_9CHLO)

HSP 1 Score: 84.3 bits (207), Expect = 1.220e-17
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   61 FVAPMAIRSLAPASSSSLKMQ-SAGSAYVETLPG--APFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVAE 303
            F+ P + R+ A +  S+++ Q SAG+ YV+TLPG  APF D   FDPL +S+GA+P++IK+WREAE+ HGRV+MLAALG +V E
Sbjct:   11 FLRPSSCRNXARSRRSTVRPQASAGTEYVKTLPGISAPFDD-PYFDPLKISEGASPDDIKRWREAELTHGRVSMLAALGFIVGE 93          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129762.2170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI4.030e-4581.19Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI5.180e-4480.20Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A6H5JYI8_9PHAE2.430e-4378.22LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5K8D0_9PHAE9.520e-4375.24LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G7S1_ECTSI7.130e-4177.55Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI2.620e-3269.39Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7FQG7_ECTSI1.630e-3062.62Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE1.870e-2947.90LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G5B4_ECTSI8.460e-2660.20Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A061SPG6_9CHLO1.220e-1754.76Chlorophyll a-b binding protein, chloroplastic n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129762contigH-elongata_contig129762:51..1021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.4
Seed ortholog evalue7.9e-36
Seed eggNOG ortholog2880.D7G7S3
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_000590.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorychloroplast
Exons2
Model size333
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929770.967423-CDS-H-elongata_contig129762:50..2031622929770.967423-CDS-H-elongata_contig129762:50..203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129762 51..203 -
1691679151.338312-CDS-H-elongata_contig129762:50..2031691679151.338312-CDS-H-elongata_contig129762:50..203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129762 51..203 -
1622929770.9788141-CDS-H-elongata_contig129762:841..10211622929770.9788141-CDS-H-elongata_contig129762:841..1021Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129762 842..1021 -
1691679151.3539715-CDS-H-elongata_contig129762:841..10211691679151.3539715-CDS-H-elongata_contig129762:841..1021Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129762 842..1021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129762.2170.1prot_H-elongata_contig129762.2170.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129762 51..1021 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129762.2170.1

>prot_H-elongata_contig129762.2170.1 ID=prot_H-elongata_contig129762.2170.1|Name=mRNA_H-elongata_contig129762.2170.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MVATQMFVGTAASLIASSAAFVAPMAIRSLAPASSSSLKMQSAGSAYVET
LPGAPFGDGKIFDPLGLSDGAAPEEIKKWREAEIKHGRVAMLAALGILVA
EVRAWINLFF*
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mRNA from alignment at H-elongata_contig129762:51..1021-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129762.2170.1 ID=mRNA_H-elongata_contig129762.2170.1|Name=mRNA_H-elongata_contig129762.2170.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=971bp|location=Sequence derived from alignment at H-elongata_contig129762:51..1021- (Himanthalia elongata Himel1 dioecious)
ATGGTCGCCACCCAGATGTTCGTTGGCACCGCTGCCTCCCTTATTGCCTC CTCTGCTGCCTTCGTGGCGCCAATGGCAATTCGCTCATTGGCACCGGCGT CTTCATCTAGCCTGAAGATGCAGAGCGCGGGCTCTGCTTATGTTGAGACC CTGCCCGGCGCTCCCTTCGGCGACGGGAAGGTAAGATATGGCATCTGGCG TGAGCTTTTGTTCACTTGCCTTTGGAAGTTGTCCGAGCTGCACAACTGTC TAATATTAGACCCAGAGACCACCCCCCTTATGCTACATGTTCCCCTGTGG CGAAATAATCTCTCGGGGCTAAAATTACATGTGGCAGAGCGGCCTTCATG TGTGGTCATCAACCGAATTTGATTGCCTCCTGCCCGTGGTCAGCTGAACC TGTCCTTAGTCGCGCCTGAGAATTTGGTCTCACGAGACGGGTTCAGTGGT CTCGTCCTGCGTCAGCCTGCTCATTTTCTCAACTCAGGCTGAATCTGGTG CGTCCTCCTGGGATCCTCTCGTTTTCCGCCACGGCGTCATCTCTACTGTA AACCGCCATCGGGCCAATCCCGATTTCATGAGTTCACGCAATTGCGTACC GATGGTGTTTACTACCGATAGTCCGCCGGCACTGAGCCAATAGTCCTAAA GGTAGCTTGAGTAAAGGGTACAGCCTCTTTATTCCCATACCCACTATTCG TGAGAGTAGGCATGATATAGCATACTGGATAGCATCGGAGGCTGAAAAGA GATGATTTGCTCGTATACTACTCCCGATGACTCATAATTCCTGAATGGTC ACTAAACTGAATCCGCAGATCTTCGACCCGCTCGGCCTATCCGATGGCGC GGCACCTGAGGAAATCAAGAAATGGCGGGAGGCCGAGATCAAGCACGGGC GGGTTGCCATGCTTGCGGCGCTTGGTATCCTCGTGGCTGAGGTGAGGGCA TGGATTAATTTGTTCTTCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig129762:51..1021-

>mRNA_H-elongata_contig129762.2170.1 ID=mRNA_H-elongata_contig129762.2170.1|Name=mRNA_H-elongata_contig129762.2170.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig129762:51..1021- (Himanthalia elongata Himel1 dioecious)
ATGGTCGCCACCCAGATGTTCGTTGGCACCGCTGCCTCCCTTATTGCCTC
CTCTGCTGCCTTCGTGGCGCCAATGGCAATTCGCTCATTGGCACCGGCGT
CTTCATCTAGCCTGAAGATGCAGAGCGCGGGCTCTGCTTATGTTGAGACC
CTGCCCGGCGCTCCCTTCGGCGACGGGAAGATGGTCGCCACCCAGATGTT
CGTTGGCACCGCTGCCTCCCTTATTGCCTCCTCTGCTGCCTTCGTGGCGC
CAATGGCAATTCGCTCATTGGCACCGGCGTCTTCATCTAGCCTGAAGATG
CAGAGCGCGGGCTCTGCTTATGTTGAGACCCTGCCCGGCGCTCCCTTCGG
CGACGGGAAGATCTTCGACCCGCTCGGCCTATCCGATGGCGCGGCACCTG
AGGAAATCAAGAAATGGCGGGAGGCCGAGATCAAGCACGGGCGGGTTGCC
ATGCTTGCGGCGCTTGGTATCCTCGTGGCTGAGGTGAGGGCATGGATTAA
TTTGTTCTTCTAGATCTTCGACCCGCTCGGCCTATCCGATGGCGCGGCAC
CTGAGGAAATCAAGAAATGGCGGGAGGCCGAGATCAAGCACGGGCGGGTT
GCCATGCTTGCGGCGCTTGGTATCCTCGTGGCTGAGGTGAGGGCATGGAT
TAATTTGTTCTTCTAG
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