mRNA_H-elongata_contig129635.2165.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: D8LQR2_ECTSI (Lrc5, mitochondrial YqeH-related GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR2_ECTSI) HSP 1 Score: 163 bits (412), Expect = 4.590e-45 Identity = 78/88 (88.64%), Postives = 86/88 (97.73%), Query Frame = 1
Query: 1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVLQGRPFLLTFFVSNDVRLHPTDASR 264
+VDLG+K+ALYDTPGLL+PHTLTSRLNA+ELRAAIPKKKVDHVTFR+GEGKVVL+GGLARVEV+ GRPFLLTFFVSNDVRLHPTDA R
Sbjct: 539 KVDLGDKRALYDTPGLLLPHTLTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVVTGRPFLLTFFVSNDVRLHPTDARR 626
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A4D9D9J5_9STRA (G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9J5_9STRA) HSP 1 Score: 123 bits (308), Expect = 9.570e-31 Identity = 54/88 (61.36%), Postives = 74/88 (84.09%), Query Frame = 1
Query: 1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVLQGRPFLLTFFVSNDVRLHPTDASR 264
+VDLG+K +LYDTPGL++PH +T+ LN +EL+A IP+K+++HVT RL EGK VLLGGL R+++L+GRPFL TF+VSN+V+LH T R
Sbjct: 664 EVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMLEGRPFLFTFYVSNEVKLHQTATDR 751
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A835YJZ8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ8_9STRA) HSP 1 Score: 121 bits (303), Expect = 2.230e-30 Identity = 55/88 (62.50%), Postives = 72/88 (81.82%), Query Frame = 1
Query: 1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVLQGRPFLLTFFVSNDVRLHPTDASR 264
+V++G LYDTPGL++PH LTSRL +EL++ IP K V+HVT RL EGK VL+GGLAR+E++ G+PFL TFFVSN+V+LH TDA+R
Sbjct: 328 RVNMGGDVCLYDTPGLILPHQLTSRLTPEELKSVIPAKAVEHVTLRLTEGKAVLVGGLARIELVSGKPFLFTFFVSNEVKLHMTDAAR 415
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A1E7F2J8_9STRA (G domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2J8_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.410e-29 Identity = 52/89 (58.43%), Postives = 72/89 (80.90%), Query Frame = 1
Query: 1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVL-QGRPFLLTFFVSNDVRLHPTDASR 264
++DLG+ + +YDTPGLL+P T+T L +ELR PKKKV+ +TFR+ GK VL+GGLA++EV+ +PFLLTFFV+ND++LHPTD+SR
Sbjct: 101 KIDLGDGQNIYDTPGLLVPGTITQLLTPEELRVVCPKKKVEPITFRVASGKCVLIGGLAKIEVIGDSKPFLLTFFVANDIKLHPTDSSR 189
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A7S2LG86_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LG86_9STRA) HSP 1 Score: 117 bits (292), Expect = 1.210e-28 Identity = 55/89 (61.80%), Postives = 71/89 (79.78%), Query Frame = 1
Query: 1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVLQ-GRPFLLTFFVSNDVRLHPTDASR 264
+VDLG + +YDTPGL++P TLTSRL EL+ +PKK V+ V+FR+G GK VL+GGLAR+EV +PFL TFFVSND++LHPTDAS+
Sbjct: 428 KVDLGNGRKMYDTPGLIVPGTLTSRLTPAELKMVVPKKPVEAVSFRVGPGKCVLIGGLARIEVASDSKPFLFTFFVSNDIKLHPTDASK 516
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A7S2W145_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W145_9STRA) HSP 1 Score: 109 bits (273), Expect = 3.810e-28 Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 1
Query: 1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVLQ-GRPFLLTFFVSNDVRLHPTDASR 264
+ DLG+ ++LYDTPGLL+P TLT L EL+ +PK+KV+ +TFR+G GK VL+GGLAR+EV + +PFL TFFVSN+++LHPT +
Sbjct: 1 KADLGDGRSLYDTPGLLVPGTLTQLLTPAELKMVVPKRKVEPITFRVGPGKCVLIGGLARIEVSEDSKPFLFTFFVSNEIKLHPTKTDK 89
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A7R9WQ60_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQ60_9STRA) HSP 1 Score: 108 bits (269), Expect = 3.160e-27 Identity = 48/89 (53.93%), Postives = 69/89 (77.53%), Query Frame = 1
Query: 1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVLQG-RPFLLTFFVSNDVRLHPTDASR 264
++DLG+ + LYDTPGLL+P T+T L +EL+ PKK+V+ +TFR+ GK +++GGLARVEV +PFLLTFFV+ND++LHPT + +
Sbjct: 31 KIDLGDGRTLYDTPGLLVPGTITQLLTGEELKVVCPKKQVEPITFRVSSGKCIMIGGLARVEVFGDCKPFLLTFFVANDIKLHPTASDK 119
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A7S2LA52_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LA52_9STRA) HSP 1 Score: 111 bits (278), Expect = 3.890e-27 Identity = 49/89 (55.06%), Postives = 72/89 (80.90%), Query Frame = 1
Query: 1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVL-QGRPFLLTFFVSNDVRLHPTDASR 264
+++LG+ +AL+DTPGLL+P LT RL +EL+ +PKK+V+ +TFR+ GK VL+GGLA+VE++ +PFL TFFV+ND++LHPTD+ R
Sbjct: 236 RIELGKGRALFDTPGLLVPGCLTERLTPEELKIVVPKKRVEPITFRVASGKCVLVGGLAKVELIGDSKPFLFTFFVANDIKLHPTDSER 324
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A7S4R4B4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R4B4_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.070e-26 Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVL-QGRPFLLTFFVSNDVRLHPTDASR 264
QVDLG + LYDTPGLL+P TLT L EL+ +PKK+V+ +T R+ GK V +GGLAR+EV+ +PFL TFFVSND++LHPTD SR
Sbjct: 583 QVDLGNGQKLYDTPGLLVPGTLTQLLTPAELKMVVPKKEVEPITLRIASGKCVQVGGLARIEVIGDSKPFLFTFFVSNDIKLHPTDTSR 671
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Match: A0A7S4NA62_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NA62_9STRA) HSP 1 Score: 110 bits (275), Expect = 2.630e-26 Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 1 QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGKVVLLGGLARVEVL-QGRPFLLTFFVSNDVRLHPTDASR 264
+VDLG LYDTPGLL+P T+T RL EL+ +PKK+V+ VTFR+ GK VL+GGLAR+EV +PFL TFFV+ND++LHPTD +
Sbjct: 469 KVDLGNGVKLYDTPGLLVPGTMTQRLTPAELKIVVPKKEVEPVTFRVASGKCVLVGGLARIEVTGNSKPFLFTFFVANDIKLHPTDVKK 557 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129635.2165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig129635.2165.1 >prot_H-elongata_contig129635.2165.1 ID=prot_H-elongata_contig129635.2165.1|Name=mRNA_H-elongata_contig129635.2165.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp QVDLGEKKALYDTPGLLMPHTLTSRLNADELRAAIPKKKVDHVTFRLGEGback to top mRNA from alignment at H-elongata_contig129635:101..696- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig129635.2165.1 ID=mRNA_H-elongata_contig129635.2165.1|Name=mRNA_H-elongata_contig129635.2165.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=596bp|location=Sequence derived from alignment at H-elongata_contig129635:101..696- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig129635:101..696- >mRNA_H-elongata_contig129635.2165.1 ID=mRNA_H-elongata_contig129635.2165.1|Name=mRNA_H-elongata_contig129635.2165.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig129635:101..696- (Himanthalia elongata Himel1 dioecious)back to top |