mRNA_H-elongata_contig102462.216.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102462.216.1
Unique NamemRNA_H-elongata_contig102462.216.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig102462.216.1 vs. uniprot
Match: D8LCJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCJ2_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 6.790e-15
Identity = 48/83 (57.83%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    1 VGEIARAAAIFEVDEIVVYDDLSVSRKGNGGVRDDSCTNGSSLTGIAGKGGGEGGGMFTAGRGSGHHDRNNPNVFMARLLQVA 249
            VGEIARAAA+FEVDEIVVYDDLSVSRKG GGVRDDS +                             D+NNPNVFMARLLQ A
Sbjct:  264 VGEIARAAAVFEVDEIVVYDDLSVSRKGQGGVRDDSASVAXXXXXXX--------XXXXXXXXXXXXDKNNPNVFMARLLQYA 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102462.216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCJ2_ECTSI6.790e-1557.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102462contigH-elongata_contig102462:1517..1765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue7e-13
Seed eggNOG ortholog2880.D8LCJ2
Preferred nameC9orf114
KEGG koko:K09142
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000819,GO:0000922,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0008150,GO:0008152,GO:0008168,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0015630,GO:0016043,GO:0016070,GO:0016441,GO:0016458,GO:0016740,GO:0016741,GO:0019222,GO:0022402,GO:0031047,GO:0031050,GO:0031616,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034641,GO:0035194,GO:0035195,GO:0035196,GO:0035198,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0046483,GO:0048285,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051235,GO:0051276,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051657,GO:0051661,GO:0051716,GO:0060255,GO:0061842,GO:0061980,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0071840,GO:0072686,GO:0090304,GO:0097159,GO:0098687,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1901698,GO:1901699,GO:1903047
EggNOG free text desc.SPOUT domain containing methyltransferase 1
EggNOG OGsCOG2106@1,KOG3925@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.5718756-CDS-H-elongata_contig102462:1516..17651622929562.5718756-CDS-H-elongata_contig102462:1516..1765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102462 1517..1765 -
1691679071.4633472-CDS-H-elongata_contig102462:1516..17651691679071.4633472-CDS-H-elongata_contig102462:1516..1765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102462 1517..1765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102462.216.1prot_H-elongata_contig102462.216.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102462 1517..1765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102462.216.1

>prot_H-elongata_contig102462.216.1 ID=prot_H-elongata_contig102462.216.1|Name=mRNA_H-elongata_contig102462.216.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
VGEIARAAAIFEVDEIVVYDDLSVSRKGNGGVRDDSCTNGSSLTGIAGKG
GGEGGGMFTAGRGSGHHDRNNPNVFMARLLQVA
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mRNA from alignment at H-elongata_contig102462:1517..1765-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102462.216.1 ID=mRNA_H-elongata_contig102462.216.1|Name=mRNA_H-elongata_contig102462.216.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig102462:1517..1765- (Himanthalia elongata Himel1 dioecious)
GTGGGTGAGATAGCGCGAGCGGCGGCGATCTTCGAGGTGGACGAGATCGT
TGTCTACGACGACTTGTCCGTCTCGAGGAAGGGCAATGGGGGAGTGCGGG
ATGATTCTTGCACCAACGGTAGCAGCCTCACCGGGATCGCCGGGAAAGGA
GGAGGGGAAGGGGGAGGCATGTTTACTGCGGGGAGAGGGAGCGGGCACCA
TGATCGAAACAATCCTAATGTGTTCATGGCGCGGCTGCTGCAGGTAGCA
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Coding sequence (CDS) from alignment at H-elongata_contig102462:1517..1765-

>mRNA_H-elongata_contig102462.216.1 ID=mRNA_H-elongata_contig102462.216.1|Name=mRNA_H-elongata_contig102462.216.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig102462:1517..1765- (Himanthalia elongata Himel1 dioecious)
GTGGGTGAGATAGCGCGAGCGGCGGCGATCTTCGAGGTGGACGAGATCGT
TGTCTACGACGACTTGTCCGTCTCGAGGAAGGGCAATGGGGGAGTGCGGG
ATGATTCTTGCACCAACGGTAGCAGCCTCACCGGGATCGCCGGGAAAGGA
GGAGGGGAAGGGGGAGGCATGTTTACTGCGGGGAGAGGGAGCGGGCACCA
TGATCGAAACAATCCTAATGTGTTCATGGCGCGGCTGCTGCAGGTAGCAG
TGGGTGAGATAGCGCGAGCGGCGGCGATCTTCGAGGTGGACGAGATCGTT
GTCTACGACGACTTGTCCGTCTCGAGGAAGGGCAATGGGGGAGTGCGGGA
TGATTCTTGCACCAACGGTAGCAGCCTCACCGGGATCGCCGGGAAAGGAG
GAGGGGAAGGGGGAGGCATGTTTACTGCGGGGAGAGGGAGCGGGCACCAT
GATCGAAACAATCCTAATGTGTTCATGGCGCGGCTGCTGCAGGTAGCA
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