mRNA_H-elongata_contig12956.2160.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12956.2160.1
Unique NamemRNA_H-elongata_contig12956.2160.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12956.2160.1 vs. uniprot
Match: D7FJB1_ECTSI (Fucokinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB1_ECTSI)

HSP 1 Score: 660 bits (1702), Expect = 5.020e-222
Identity = 368/616 (59.74%), Postives = 425/616 (68.99%), Query Frame = 3
Query:    3 IDEALKAAKAA-DKKDPQTGGLCTSRVLLVHSGGDSQRSPTQCVCGKAWSALNSCGD-GSGTCNTPMDLLLDHLTRLFGSG----LAPGSLVVTACDVMMLIPSHVAARVDWSM----GGGGAVAGLAIAADAGKYAPNHGVYCLEDGGLNRDDEGDKCGVASVREYLQKPSFVVAKTSGAFLAPSG---------------STHPEVAIDSGVVVFSGEATAALICLASSEILRGCTSRGVNDGAKPLRLELYSDLLLALKTSSSGG--GEGGFEAYLAACGPALAPNHPLSLARKQMWNSLKGFPLGALLLRGATFVHLGTTPELMEMATFRLPDFVEPFSLMSKAGSLLGAACSVETDPPAVVINSNLQGAGVVAGGAVVEHCLFEGDGWEIGAGSLVSGVRSLASDHRLRLRSGMCLQQTDLGHLAQMKEEEERTEDVEMKDKGKGKSFVVSLFGVSDDIKAHYSKEKARICGARWKAFFAYSGATVEDIWRGVEEPDRKLWSARLFPVLSVEPVEGRYGNA---EVFMWMQHVQEH-----------YATATSSEAAPPP------GAVEATKA-----WLAAERLSFKEILARANPAAEFQWRRRLEEDI 1694
            I +AL+AA+ + D +DPQ  GL  +RVLLVHSGGDSQRSPTQCVCGKAWSALNSCGD GSG CNTPMDLLL+HL+RLF  G    L PG+LVVTACDVM+L+P  VAA  DWS     G  G VAGLAIAADA KYA NHGVYCL+ G      E    G+  VR+YLQKPS   A+ SGAFL P G               S +PEVAIDSGVVVFSG AT AL  LA SE  +GCTSRGV  GA  LRLELYSDLLLAL+T    G   EG  +AYL ACG  L P+H +S AR+++W++L GFPLGALLL+GATFVHLGTTPELMEM T RLP+F+EP+ L ++A S++GAACSVE DPPAVV+NS+L GAGVVAGGAVVEHC F+ DGWE+GAGSL+SG+RSL  D  LRLR GMCLQQTDL   +      E T             FVVSLFG  DDIKAHYS ++AR+CGA W+AFF Y+GAT ED+W G+EE DRKLWSARLFPVL+    +    ++      MWMQ VQEH                    + PP      G + ATK      WLAAERLSFKEILA+A+P AEF+WRR LEE I
Sbjct:   97 IHQALRAAQLSNDNQDPQ--GLAAARVLLVHSGGDSQRSPTQCVCGKAWSALNSCGDSGSGRCNTPMDLLLEHLSRLFSGGSSGSLEPGTLVVTACDVMLLVPPEVAATADWSFDQQSGAAGGVAGLAIAADAAKYASNHGVYCLDGGXXXXXQESH--GITGVRKYLQKPSREEAEASGAFLNPGGMAAPKNESGNPNHDPSANPEVAIDSGVVVFSGAATRALTSLAHSETFKGCTSRGVAGGASALRLELYSDLLLALRTGGGTGESAEGTLDAYLEACGHVLPPDHDVSKARREIWDALSGFPLGALLLQGATFVHLGTTPELMEMLTLRLPEFIEPYGLTARASSVVGAACSVENDPPAVVVNSSLHGAGVVAGGAVVEHCYFDRDGWEVGAGSLISGIRSLEEDCHLRLRGGMCLQQTDLDRASP-----EET----------ASRFVVSLFGARDDIKAHYSADRARVCGATWEAFFGYTGATAEDVWGGIEEGDRKLWSARLFPVLTRSQGQAAGTSSTSINTVMWMQDVQEHAXXXXXXXXXXXXXXXXXXVSSPPISGDRGGGIAATKPVAVKNWLAAERLSFKEILAKADPGAEFRWRRDLEEGI 693          
BLAST of mRNA_H-elongata_contig12956.2160.1 vs. uniprot
Match: A0A6H5LE27_9PHAE (FK protein ( GFPPprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE27_9PHAE)

HSP 1 Score: 663 bits (1711), Expect = 3.590e-213
Identity = 370/618 (59.87%), Postives = 432/618 (69.90%), Query Frame = 3
Query:    3 IDEALKAAKAA-DKKDPQTGGLCTSRVLLVHSGGDSQRSPTQCVCGKAWSALNSCGD-GSGTCNTPMDLLLDHLTRLFGSG----LAPGSLVVTACDVMMLIPSHVAARVDWSM----GGGGAVAGLAIAADAGKYAPNHGVYCLEDGGLNRDDEGDKCGVASVREYLQKPSFVVAKTSGAFLAPSG---------------STHPEVAIDSGVVVFSGEATAALICLASSEILRGCTSRGVNDGAKPLRLELYSDLLLALKTSSSGG--GEGGFEAYLAACGPALAPNHPLSLARKQMWNSLKGFPLGALLLRGATFVHLGTTPELMEMATFRLPDFVEPFSLMSKAGSLLGAACSVETDPPAVVINSNLQGAGVVAGGAVVEHCLFEGDGWEIGAGSLVSGVRSLASDHRLRLRSGMCLQQTDLGHLAQMKEEEERTEDVEMKDKGKGKSFVVSLFGVSDDIKAHYSKEKARICGARWKAFFAYSGATVEDIWRGVEEPDRKLWSARLFPVLSVEPVEGRYGNAE-----VFMWMQHVQEHYATATSS-----------EAAPPP------GAVEATKA-----WLAAERLSFKEILARANPAAEFQWRRRLEEDI 1694
            ID+AL+AA+ + D +DPQ  GL  +RVLLVHSGGDSQRSPTQCVCGKAWSALNSCGD GSG CNTPMDLLL+HL+RLF  G    L PG+LVVTACDVM+LIP  VAA  DWS     G  G VAGLAIAADA KYA +HGVYCL+ G      +    G+  VR+YLQKPS   A+TSGAF+ P                 + +PEVAIDSGVVVFSG AT AL  LA SE  +GCTSRGV  GA  LRLELYSD+LLAL+T  + G   EG  +AYL ACGP L P+H +S AR+++W++L GFPLGALLL+GA FVHLGTTPELMEM T RLP+F+EP+ L ++A S++GAACSVE DPPAVV+NS+L GAGVVAGGAV+EHC F+ DGWEIGAGSL+SG+RSL  D  LRLR GMCLQQTDL   A  +E   R              FVVSLFG  DDIKAHYS E+AR+CGA W+AFF Y+GATVED+W G+EE DRKLWSARLFPVL+   ++G+            MWMQ VQEH A                + + PP      G + ATK      WLAAERLSFKEILA+ANP AEF+WRR LEE +
Sbjct:   97 IDQALRAAQLSNDSQDPQ--GLAAARVLLVHSGGDSQRSPTQCVCGKAWSALNSCGDSGSGRCNTPMDLLLEHLSRLFSGGSSGSLEPGTLVVTACDVMLLIPPEVAATADWSFDNQSGAAGGVAGLAIAADAAKYASHHGVYCLDGGXXXXXQKSH--GIKGVRKYLQKPSREEAETSGAFINPGSMVTPNNESGNPNHDPNANPEVAIDSGVVVFSGAATWALTSLALSETFKGCTSRGVAGGASALRLELYSDILLALRTGGATGESAEGMLDAYLEACGPVLPPDHDVSKARREIWDALSGFPLGALLLQGAKFVHLGTTPELMEMLTLRLPEFIEPYGLTARASSVVGAACSVENDPPAVVVNSSLHGAGVVAGGAVIEHCYFDRDGWEIGAGSLISGIRSLGEDCHLRLRGGMCLQQTDLDR-ASPEEPASR--------------FVVSLFGTRDDIKAHYSAERARVCGATWEAFFGYTGATVEDLWGGIEEGDRKLWSARLFPVLT--RIQGQAAGTSSTSINTVMWMQDVQEHAAXXXXXXXXXXXXXXXXDVSSPPISGDRGGGIAATKPVAVKNWLAAERLSFKEILAKANPGAEFRWRRHLEEGM 693          
BLAST of mRNA_H-elongata_contig12956.2160.1 vs. uniprot
Match: A0A0G4EMB4_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EMB4_VITBC)

HSP 1 Score: 250 bits (639), Expect = 2.090e-64
Identity = 193/553 (34.90%), Postives = 269/553 (48.64%), Query Frame = 3
Query:   78 VLLVHSGGDSQRSPTQCVCGKAWSALNSCGDGSGT---CNTPMDLLLDHLTRLFGSGLAPGSLVVTACDVMMLIPSHVAARVDWSMGGGGAVAGLAIAADAGKYAPNHGVYCLEDGGLNRDDEGDKCGVASVREYLQKPSFVVAKTSGAFLAPSGSTHPEVAIDSGVVVFSGEATAALICLASSEILRGCTSRGVNDGAKPLRLELYSDLLLALKTSSSGGGEGGFEAYLAACGPALAPNHPLSLARKQMWNSLKGFPLGALLLRGATFVHLGTTPELMEMATFRLPDFVEPFSLMSKAGSLLGAACSVETDPP--------AVVINSNL-----QGAGVVAG---GAVVEHCLFEGDGWEIGAGSLVSGVRSLASDHRLRLRSGMCLQQTDLGHLAQMKEEEERTEDVEMKDKGKGKSFVVSLFGVSDDIKAHYSKEKARICGARWKAFFAYSGATVEDIWRG-VEEPDRKLWSARLFPVLSVEPVEGRYGNAEVFMWMQHVQEHYATATSSEAAPPPGAVEATKAWLAAERLSFKEILARANPAAEFQWRR 1676
            +L++HSGGDSQRSP Q VCGKA++ LN C    GT    + P DLLL+ L RLF +G+  G LVV+  DV++ +P       D  M GG  V G+A   DA +Y P HGVY     G              V ++LQKP+  V  + GA L P      ++A+D+GVV F    T  L+ +A S +L GCT  G+ +G  PLR ELYSD++LAL  +S+       E YL   G +  P   L  AR+ +W  L+       +     F+HLGTT ELM+        F    SL     S L     +   PP         VV NS L      GA  VAG   GAV+EH + EG  + +G  + VSGVRS   D  L +   M +Q+T +G                      G   VV+++ + DDIK   + ++A +CG  W+  +  +  T +DIW   V    R LW+ARLFP     P         + +W+  +++  AT TS +     G ++    W  A RLS K+IL +A+ + EF WR+
Sbjct:   77 LLIIHSGGDSQRSPVQSVCGKAFATLN-CQQQGGTGPFLSAPFDLLLESLCRLF-AGVKKGGLVVSCSDVVLAVP-----HADEGMWGGSGVVGVAAEVDA-RYGPRHGVYVPTTEGR-------------VAQFLQKPTEAVMTSEGASLPPG-----KIAVDTGVVYFDTTTTQRLVEMAQSPVLAGCTEAGLKEGQPPLRTELYSDIMLALSGASTDQ-----EGYLRHDGGS--PPEALVRAREMLWKELQTVGFSVAMPSEMDFLHLGTTKELMDFMCGAKASFTAAHSLRPVVASYLPPFHPLTRPPPLPTQTHPWTVVSNSILLPVDSSGASDVAGCLSGAVIEHSVLEGR-YHVGHRAFVSGVRSGYRDG-LCVGDEMVVQETAVG----------------------GGMHVVAVYCLGDDIKRPAADQQATVCGVPWETLYDAAQVTADDIWPSDVAASKRTLWTARLFPPF---PAASPQARRPLSLWLMQLRDKRATITSDDRLA--GVIQE---WRRAHRLSLKDILRQADASQEFHWRK 564          
BLAST of mRNA_H-elongata_contig12956.2160.1 vs. uniprot
Match: W7TJC8_9STRA (L-fucose kinase n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJC8_9STRA)

HSP 1 Score: 236 bits (603), Expect = 3.770e-60
Identity = 211/616 (34.25%), Postives = 283/616 (45.94%), Query Frame = 3
Query:   78 VLLVHSGGDSQRSPTQCVCGKAWSALNSCGDGSGTCNTPMDLLLDHLTRLFGSGLAPGSLVVTACDVMMLIPSHVAARVDWSMGGGGAVAGLAIAADAGKYAPNHGVY--------CLEDG-GLNRDDEGDKCGVASVREYLQKPSFVVAKTSGAFLAPSGSTHPEVAIDSGVVVFSGEATAALICLASSE-ILRGCTSRGVNDGAKP-------LRLELYSDLLLALKT------SSSGGGEGGFEAYLAACGPALAPNHPLSL--ARKQMWNSLKGFPLGALLLRGATFVHLGTTPELMEMATFRLPDFVEPFSLMSK------------AGSLLGAACSVETDPPAVVINSNLQGAG--VVAGGAVVEHCLFEGDG-WEIGAGSLVSGV-RSLASDHRLRLRSGMCLQQTDLGHLAQMKEEEERTEDVEMKDKGKGKSFVVSLFGVSDDIKAHYSKE-KARICGARWKAFFAYSGATVEDIW-----------------RGVEEPD-----RKLWSARLFPVLSVEPVEGR-YGNAEVFMWMQHVQEHYATATSSEAAPPPGAVEATKAWLAAERLSFKEILARANPAAEFQWRRRLEEDIRGGGR*ATNEGE 1730
            +L+VHSGGDSQRSPT  VCGKAWS LNS     G  NTP+DLLL+  T+LF  G+  G+LVV + DV++++P      VDW+   G  V GLA +  A    PNHGVY        C   G  +    E  K     V +YLQK S V     GA      ST   V ID+GV+ F  + T  L+ L  +  + R C SRG  +G          LRLELY+D+LLAL        +S  G +G      A       P    +L  AR  +W+ L  +P  AL  RGA F HLGTT EL  M T ++  F   F L  +            AG+  G     + +  AVV+NS L  +G   +  G++VEH + EG+   E+GAG+LVSG+  + A   ++ +  G+ +Q+  LG            E      +     +VVS+  + D++KA Y KE +A +    W             IW                   V++ D     R LW A LFP +       R  G    + W Q        A +S+   P    EA  AW  A RLS  +ILA+A P AEF+WRR LE  I       T+ GE
Sbjct:  102 ILMVHSGGDSQRSPTNSVCGKAWSCLNSHRKEDGGSNTPIDLLLEQFTQLFAGGVPSGALVVASSDVLLVLPPW---PVDWASQRG--VVGLAASVPAA-LGPNHGVYVTATSAIACARRGRDVEERSEDRKVMTQRVMQYLQKASLVDLTAKGAV-----STEGNVLIDTGVLFFCPQITRELMSLPKAHAVFRRCCSRGETEGGTAEGRVEAALRLELYTDMLLALSDGLGQDRASYVGMDGASSEKEAVERAGQGPGAVSALREARGVLWDCLGRWPFSALAPRGALFGHLGTTQELQAMMTLKMTPFSSAFRLARRVCCVVEGEEKDSAGAQSGEEAYKKKEG-AVVLNSILTPSGGLCLGDGSIVEHSVVEGESRLEVGAGTLVSGLCHAPAQQAKICIGPGVVVQEVRLG----------AAEGTGQPGRPLASPYVVSVLSLHDNVKATYGKEPQAGVWNRPWGVVLDMLQVDAGVIWPHSRLPVDSNVSTTKGISAVKDSDFQPRPRTLWHACLFPAVGEAGAPARGTGCRGAWYWQQ--------AYASQGKIPSR--EAVVAWRQARRLSLSDILAQAEPRAEFRWRRALEARILTRTTRETSHGE 685          
BLAST of mRNA_H-elongata_contig12956.2160.1 vs. uniprot
Match: A0A5A8EPJ8_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EPJ8_CAFRO)

HSP 1 Score: 225 bits (574), Expect = 1.550e-56
Identity = 210/674 (31.16%), Postives = 283/674 (41.99%), Query Frame = 3
Query:   78 VLLVHSGGDSQRSPTQCVCGKAWSALNSCGDGSGTCNTPMDLLLDHLTRLFGSGLAPGSLVVTACDVMMLIPSHVAARVDWSMGGGGAVAGLAIAADAGKYAPNHGVYCLEDGGLNRDDEGDKCGVASVREYLQKPSFVVAKTSGAFLAPSGSTHPEVAIDSGVVVFSGEATAALICLASSEILRGCTSRGVNDGAKPLRLELYSDLLLALKTSSSGGGEGGFEAYLAACGPALAPNHPLSLARKQMWNSLKGFPLGALLLRGATFVHLGTTPELMEMATFRLP----------------DFVEPFSLMSKAGSL--------LGAACSVETDPPAVVINSNLQGAGVVAGGAVVEHCLFEGDGWEIGAGSLVSGVRSLASDHRLRLRSGMCLQQTDLGHLAQM--------KEEEERTEDVEMK----------DKGKGKSF------------------------------------------------------------------VVSLFGVSDDIKAHYSKEKARICGARWKAFFAYSGATVEDIWRG-VEEPDRKLWSARLFPVLSVEPVEGRYGNAEVF--------------------------MWMQHVQEHYATATSSEAAPPPGAVEATKAWLAAERLSFKEILARANPAAEFQWRRRLEEDI 1694
            VLL+HSGGDSQR P Q VCGKAWSAL    D       P+DLL++ LT LF  G+  G +VV + DV++LIP     RVDW   G     GLAI +      PNHGVY +         +G       V  + QK +      +GA ++P+G    EV +DSGV+ FS  AT+ L+ LA +  +  CT  GV+   +PLR+ELYSDLLLA+    SGG    F  +       L P+  ++ AR  +W  L   PL A + +G TF+H+GTTPE   + T   P                      + +S  GS         LG  CS         +NS  + AG    GA  EHC+  GD W +GAG++ SGVR++     LRLR G  +Q++ +   A          +E+EE                   +G G+ F                                                                  V+S+  V D IK  +    AR+CG  W  F   +G    D+W   V E  R LW+ARLFPV       GR    +V                           +W+Q V    A       A  P A+     W A+ERLS K++LARA+  AEF WRRRL  ++
Sbjct:   92 VLLIHSGGDSQRLPLQSVCGKAWSALPVFSDRL-ELQAPVDLLIETLTTLF-RGVKAG-VVVASSDVLLLIPESF--RVDWPQEG---ATGLAIPSPKA-LGPNHGVYHV----AALPGDGAASMHVPVERFFQKATVDELAAAGA-VSPAG----EVLLDSGVIYFSPPATSTLLELAQTAPVLSCTYLGVDTATRPLRVELYSDLLLAM----SGGLGQTFAQFHDMDTADLNPDR-IAAARGLLWRDLSPMPLFAAVAQGGTFLHVGTTPEYRSLLTEPTPPTAALGLRRWAACFDRSSARSMTSVSSGGSKSSAGEAAPLGGMCS---------LNSVFESAGERGDGAFAEHCVLRGD-WSLGAGAIASGVRTV---EHLRLRPGFAVQESFVAEPADWAPLDDVYAREDEEEXXXXXXXXXXXXXXXXXSRGSGEPFESPVAAALGXXXXXXXGGRSLAPRISAPRARAGSQPASGDGVTGRSSVERALASPQHAPLVEAELRVISVLHVDDPIKKQWRDAGARVCGVGWDEFMRAAGVEEADVWPAHVPEAARTLWTARLFPVDRPSHGVGRCSGDDVMSPTAPLPSALATPAARAEMPEVDAASLWLQDVAAAGAGRWGDCEAASPAAIAR---WRASERLSLKDLLARADARAEFAWRRRLRGEV 726          
BLAST of mRNA_H-elongata_contig12956.2160.1 vs. uniprot
Match: UPI0007121680 (fucose kinase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007121680)

HSP 1 Score: 212 bits (540), Expect = 1.060e-52
Identity = 173/547 (31.63%), Postives = 249/547 (45.52%), Query Frame = 3
Query:   63 LCTSRVLLVHSGGDSQRSPTQCVCGKAWSALNSCGDGSGTCNTPMDLLLDHLTRLFGSGLAPGSLVVTACDVMMLIPSHVAARVDWSMGGGGAVAGLAIAADAGKYAPNHGVYCLEDGGLNRDDEGDKCGVASVREYLQKPSFVVAKTSGAF--LAPSGSTHPEVAIDSGVVVFSGEATAALICLASSEILRGCTSRGVNDGAKPLRLELYSDLLLALKTSSSGGGEGGFEAYLAACGPALAPN-HPLSLARKQMWNSLKGFPLGALLLRGATFVHLGTTPELMEMATFRLPDFVEPFSLMSKAGSLLGAACSVETDPPAVVINSNLQGAGVVAGGAVVEHCLFEGDGWEIGAGSLVSGVRSLASDHRLRLRSGMCLQQTDLGHLAQMKEEEERTEDVEMKDKGKGKSFVVSLFGVSDDIKAHYSKEKARICGARWKAFFAYSGATVEDIWRGVEEPDRKLWSARLFPVLSVEPVEGRYGNAEVFMWMQHVQEHYATATSSEAAPPPGAVEATKAWLAAERLSFKEILARANPAAEFQWRRRLEEDI 1694
            L  S+++++HSGGDS+RSP Q +CGKAWSA+NS         TP D LL +L   F    +P  L+V + DV  L+      + DW+  G   V GL I      Y   HGVY  ++ G              V+E+ QK S    +  GA   +  +G     V +DSGVV F  + T  L  +     L  CT  GV++GA PLR+ELYSD++ AL  S         E Y+    P  A     +  AR   W  L+  P    +   + FVH+GTT E +E  T R   + +   L     S +    SV      VV+NS + G G     +V+EH   EG  W IG  S VS + S      L +++ + +Q+  +             ED            ++  +GV D IKA Y  EKA ICG  W  FF  +G     IW   +  +R LW+A+LFPVL          + ++ +WMQ +  H +             +E+ K W   +RLS  +IL R +P+  F WR+++  +I
Sbjct:   81 LANSKIVIIHSGGDSRRSPLQSLCGKAWSAVNS--SLREDVMTPFDFLLLNLADAFRD--SPPGLIVCSSDV--LLDFGKVQKADWTRPG---VTGLGIPMPI-DYGTRHGVYISDEFG-------------KVKEFCQKASVEELRAKGAVHKVLVNGIEEERVNLDSGVVFFDSQTTQTLTNIHLYPPLDACTYMGVDNGATPLRIELYSDIMEALGNSPLTE-----EEYMNL--PTSAKQLQVVKDARAIFWRHLRKIPFNVCVPDDSDFVHVGTTLENIEFLT-RESKWAQRLQLNKHVQSFIRNEASVAQS---VVMNSLISGEGEAGEQSVIEHSRLEG-AWRIGHTSFVSQIHSFTD---LEVKNEVAVQEIAVN------------ED----------DLILICYGVRDQIKAQYGTEKATICGQSWDRFFEVAGVVPRKIWPDTDG-ERTLWNAKLFPVLHASD------DPDIALWMQDLT-HVS-------------MESVKHWRTCDRLSLSDILLRCDPSTSFLWRKQINMEI 546          
BLAST of mRNA_H-elongata_contig12956.2160.1 vs. uniprot
Match: A0A812MTR0_9DINO (Fcsk protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812MTR0_9DINO)

HSP 1 Score: 194 bits (492), Expect = 3.460e-47
Identity = 168/500 (33.60%), Postives = 234/500 (46.80%), Query Frame = 3
Query:   99 GDSQRSPTQCVCGKAWSALNSCGDGSGTCNTPMDLLLDHLTRLFGSGL--APGSLVVTACDVMMLIPSHVAARVDWSMGGGGAVAGLAIAADAGKYAPNHGVYCLEDGGLNRDDEGDKCGVASVREYLQKPSFVVAKTSGAFLAPSGSTHPEVAIDSGVVVFSGEATAALICLASSEILRGCTSRGVNDGAKPLRLELYSDLLLALKTSSSGGGEGGFEAYLAACGPALAPNHPLSLARKQMWNSLKGFPLGALLLRGATFVHLGTTPELMEMATFRLPDFVEPFSLMSKAGSL----LGAACSVETDPP--AVVINSNLQGAGVVAGGAVVEHCLFEGDGWEIGAGSLVSGVRSLASDHR-----------LRLRSGMCLQQTDLGHLAQMKEEEERTEDVEMKDKGKGKSFVVSLFGVSDDIKAHYSKEKARICGARWKAFFAYSGATVEDIWRGVEEPDRKLWSARLFPVLSVEPVEGRYG----NAEVFMWMQHVQ 1529
            GDSQR P+Q VCGKAWSAL S      T N  +    DH+  +    L  AP  LVV   D ++  PS   + +++   G     GLAI+  A  Y P HGVY L          G    V +V  + QK S V  ++ GA +        +V +DSGV+ F  +  ++LI LA   ++R CT   V+    P+R+ELYSD+L+A      G G  GF     A     A    +++ R+ +W   +G PL A    GA F H+GTTPE + + T       E  S     G L    LG   S+E   P  A V+N+ L  +G +  G+VVEH    G  W IGAGSLVS VRS    +            L++     +Q+T L  LA+      RT        G   + V+S+ GV+D IKA +    A   G  W  FF  +G    ++W G E  +R LW+A LFPV  +  +  R      N    +W+Q++Q
Sbjct:    1 GDSQRMPSQSVCGKAWSALPSL-----TTNDELVTPFDHMVAIMMQLLDQAPCGLVVGCSDTLLSFPSL--SNLEFPEDG---PTGLAISMPA-SYGPRHGVYKLA---------GSSDSVQAVESFYQKASVVELESDGAVV------DGQVFLDSGVIYFPRKTVSSLIDLARQPVVRRCTYMSVDSNETPIRIELYSDILMAF-AGGMGRGHDGFLGIEFADSDVEA----VTVVREALWQEFQGCPLYAYAPDGAQFAHVGTTPEYLALLT-------EDSSFRKVCGLLPSVALGQPSSLEFTVPEGACVLNTLLHSSGTLGCGSVVEHSELWGS-WSIGAGSLVSAVRSFGLQNNSGEEEKSEAMGLQVLPNTGVQETHL--LAKHLPLPLRTS----MPPGAATARVLSVIGVNDPIKASFGTAAASYVGTSWDTFFEITGCQSTEVWAG-ESAERTLWNASLFPVTPLPALARRERAHAVNEAASLWLQYLQ 454          
BLAST of mRNA_H-elongata_contig12956.2160.1 vs. uniprot
Match: A0A196SM10_BLAHN (L-fucose kinase-like protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SM10_BLAHN)

HSP 1 Score: 192 bits (487), Expect = 6.780e-46
Identity = 169/552 (30.62%), Postives = 250/552 (45.29%), Query Frame = 3
Query:   63 LCTSRVLLVHSGGDSQRSPTQCVCGKAWSALNS--CGDGSGTCNTPMDLLLDHLTRLFGSGLAPGSLVVTACDVMMLIPSHVAARVDWSMGGGGAVAGLAIAADAGKYAPNHGVYCLEDGGLNRDDEGDKCGVASVREYLQKPSFVVAKTSGAFLAP--SGSTHPEVAIDSGVVVFSGEATAALICLASSEILRGCTSRGVNDGAKPLRLELYSDLLLALKTSSSGGGEGGFEAYLAACGPALAPN-HPLSLARKQMWNSLKGFPLGALLLRGATFVHLGTTPELMEMATFRLPDFVEP---FSLMSKAGSLLGAACSVETDPPAVVINSNLQGAGVVAGGAVVEHCLFEGDGWEIGAGSLVSGVRSLASDHRLRLRSGMCLQQTDLGHLAQMKEEEERTEDVEMKDKGKGKSFVVSLFGVSDDIKAHYSKEKARICGARWKAFFAYSGATVEDIWRGVEEPDRKLWSARLFPVLSVEPVEGRYGNAEVFMWMQHVQEHYATATSSEAAPPPGAVEATKAWLAAERLSFKEILARANPAAEFQWRRRLEEDI 1694
            L  S+++++HSGGDS+RSP Q +CGKAWSA+NS  C +      TP D LL +L + F    +P  L+V + DV++    +  ++ DWS  G   V GL I  D   Y   HGV+         D +G       V E+ QK S    +  GA       G    +V +DSGVV F  + T  L  +     L  CT  GV+ GA PLR+ELYSD++ AL  S        +E Y+    P  A     +  AR   W  L+       + +G+ FVH+GTT E +   T       EP   +S +  A  +     + E    AVV+NS                             S VS +RS      L +   + +Q+  +  +     +E  T   ++ D  +    V+  +GV D IKA +    A +CG  W  FF  +G + + IW    + DR LWSA+LFPVLS E       + +V +W+Q + EH              +VE+ + W   ER+S  +IL   NP+  F+WR++L  ++
Sbjct:   89 LANSKIVIIHSGGDSRRSPLQSLCGKAWSAVNSTLCEEVM----TPFDFLLQNLAKAFKD--SPPGLIVCSSDVLLDFGEY--SKADWSKPG---VTGLGIPMDI-DYGTRHGVFI-------HDADGH------VIEFCQKASVEQLRAKGAVHTEVVDGVEVEKVDLDSGVVFFDSQTTQILTNIHLYPPLDACTYMGVDSGATPLRIELYSDIMEALGDSPLT-----YEEYMNL--PTSAKQVQAVKDARDIFWKHLRKIQFNVAVPKGSDFVHVGTTKENIAFLT-------EPSKWYSRLHLAPHVQSFIKNEEAVQHAVVMNSXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-SFVSQIRSYED---LVVHDSIAVQEIAVAQINTASPDEGITAG-QLSDSHQS---VLICYGVEDPIKAQFGSSGAMVCGQSWDRFFEVAGVSPKKIWPS--DDDRSLWSAKLFPVLSKED------DWDVALWIQDL-EH-------------ASVESVRRWRVCERISLSDILTYCNPSTSFEWRKKLNMEV 571          
BLAST of mRNA_H-elongata_contig12956.2160.1 vs. uniprot
Match: A0A0G4HS55_9ALVE (START domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HS55_9ALVE)

HSP 1 Score: 147 bits (370), Expect = 8.790e-32
Identity = 174/552 (31.52%), Postives = 241/552 (43.66%), Query Frame = 3
Query:   75 RVLLVHSGGDSQRSPTQCVCGKAWSALNSCGDG----------SGTCNTPMDLLLDHLTRLF----GSGLAPG-SLVVTAC-------DVMMLIPSHVAARVDWSMGGGGAVAGLAIAADAGKYAPNHGVYCLEDGGLNRDDEGDKCGVAS-----------VREYLQKPS-FVVAKTSGAFLAPSGSTHPEVAIDSGVVVFSGEATAALICLASSE-ILRGCTSRGVNDGAKPLRLELYSDLLLALKTSSSGGGEGGFEAYLA-----ACGPALAPNHPLSLARKQMWNSLKGFPLGALLLRGAT---FVHLGTTPELM----------EMATFRLPDFVEPFSLMSKAGSLLGAACSVETDPPAVVINS--------------------NLQGAG-------VVAGG--AVVEHCLFEGDGWEIGAGSLVSGVRSLASDHR---LRLRSGMCLQQTDLGHLAQMKEEEERTEDVEMKDKGKGKSFVVSLFGVSDDIKAHYSKEKARICGARWKAFFAYSGATVEDIWRG--VEEPDRKLWSARLFPVLSV 1469
            R+LLVHSGGDSQR P Q +CGKAWS LN    G          +    +  DL   ++ +LF    G G+A   S V+ +C        V++  PS  A  VD +      V GLAI+A A  Y P HGVY LED      D G  C  A            VR +LQKPS  V+A T+GA      S   E+A+DSGVV+      ++L+ L  S   L GCT RG+  G   LR+ELYSD+L+A+ T+   G    FE +L       C P  +    +  AR+ +W  L+ F   AL  RG     F HLGT PELM          E+   R+   +    +++  G++       E+    V +NS                    +L+G G       V  G    VV+  L      ++G+GS + G R+L +  R   +    G  LQ+  L  L          EDV      + +  V+ ++G  D  K    K   R  G  W+          E +W    V++  R LW+ARLFP LS+
Sbjct: 1326 RILLVHSGGDSQRLPIQSLCGKAWSPLNVPPFGVIIGSPSSRRTEISKSSFDLTFAYMCKLFAKFQGDGVAVCCSDVLLSCVAPDDNPRVLLWEPSDTA--VDQT------VVGLAISA-ASSYGPKHGVYVLED------DYGSACNCADSSDSSSRIPLPVRTFLQKPSPSVLAGTAGAT-----SAEGEIALDSGVVLLGTSVVSSLLGLTGSGGALAGCTERGIAGGTDVLRVELYSDILMAVGTA---GVTRSFEDFLLHDQTKGCIPPAS----VVKARQALWRELERFRFFALWPRGKEAWRFEHLGTVPELMRWMLERGSVGELRRQRVVTSLCSADVLN--GAMTAGGKEAESPCSFVFLNSVLEVGRGEASTRIEGRQGGRSLEGEGRDARCVSVTVGRDCIVVDSALCPRRKLQLGSGSFLCGCRTLEAVEREGAVVAEPGTVLQEIPLTSLQGGDPPNSSCEDVGT---DRERPRVLFVYGTQDGPKDLIGKG-GRFLGILWEDALEALRLREEHVWPPGLVKQDSRCLWTARLFPCLSL 1844          
BLAST of mRNA_H-elongata_contig12956.2160.1 vs. uniprot
Match: D8LXX9_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LXX9_BLAHO)

HSP 1 Score: 134 bits (338), Expect = 1.950e-28
Identity = 115/371 (31.00%), Postives = 168/371 (45.28%), Query Frame = 3
Query:  648 GVNDGAKPLRLELYSDLLLALKTSSSGGGEGGFEAYLAACGPALAPNHPLSL-----------ARKQMWNSLKGFPLGALLLRGATFVHLGTTPELMEMATFRLPDFVEPFSLMSKAGSLLGAACSVETDPPA----VVINSNLQGAGVVAGGAVVEHCLFEGDGWEIGAGSLVSGVRSLASDHRLRLRSGMCLQQTDLGHLAQMKEEE----ERTEDVEMKDKGKGKSFVVSLFGVSDDIKAHYSKEKARICGARWKAFFAYSGATVEDIWRGVEEPDRKLWSARLFPVLSVEPVEGRYGNAEVFMWMQ---HVQEHYATATSSEAAPPPGAVEATKAWLAAERLSFKEILARANPAAEFQWRRRLEEDI 1694
            GV+ GA PLR+ELYSD++ AL  S        ++ Y+    P  A  +   L           AR   W  L+       +   + FVH+GTT E +E  T       +P +  S+   L     S  T+P A    VV+NS + G G     AV+EHC   G  W IG+ + +S +RS +    + +R G+ +Q+  +  L +   +E     R ED            VV  + + D IKA     +A +CG  W+ FF  SG + + +W   E  DR LWSA+LFPVL+  P E      +V +W+Q   HV                  +E+ K W A ER+S  +IL   NP   F+WR RL  ++
Sbjct:    2 GVDSGANPLRIELYSDIMEALGDSPLT-----YDDYMNL--PTSAKKYEAWLRIERSVQAVRDARAIFWRHLRKIQFNVAVPEQSDFVHVGTTKENIEFLT-------QPSAWASRL-RLSRHVQSYITNPAALSDVVVMNSLVSGDGEAGSCAVIEHCRLSGT-WSIGSRAFLSQLRSFSD---VSVRDGIAVQEIAVSTLNRASPDEGVLTSRLEDCH--------HAVVICYSIHDSIKAQLGTPQATVCGQSWERFFEVSGLSEKRVWP--EGDDRSLWSAKLFPVLT--PGEDEL---DVALWLQDMAHVN-----------------MESVKRWRACERISLSDILTYCNPCTSFEWRHRLNLEV 321          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12956.2160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJB1_ECTSI5.020e-22259.74Fucokinase domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5LE27_9PHAE3.590e-21359.87FK protein ( GFPPprotein ) n=1 Tax=Ectocarpus sp. ... [more]
A0A0G4EMB4_VITBC2.090e-6434.90Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
W7TJC8_9STRA3.770e-6034.25L-fucose kinase n=4 Tax=Monodopsidaceae TaxID=4250... [more]
A0A5A8EPJ8_CAFRO1.550e-5631.16Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
UPI00071216801.060e-5231.63fucose kinase n=1 Tax=Blastocystis sp. subtype 4 T... [more]
A0A812MTR0_9DINO3.460e-4733.60Fcsk protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A196SM10_BLAHN6.780e-4630.62L-fucose kinase-like protein n=1 Tax=Blastocystis ... [more]
A0A0G4HS55_9ALVE8.790e-3231.52START domain-containing protein n=1 Tax=Chromera v... [more]
D8LXX9_BLAHO1.950e-2831.00Uncharacterized protein n=1 Tax=Blastocystis homin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12956contigH-elongata_contig12956:628..7613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score567.4
Seed ortholog evalue6.7e-159
Seed eggNOG ortholog2880.D7FJB1
KEGG rclassRC00002,RC00078
KEGG koko:K00976,ko:K05305
KEGG ReactionR01951,R03161
KEGG Pathwayko00051,ko00520,ko01100,map00051,map00520,map01100
GOsGO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009225,GO:0009226,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0042350,GO:0042352,GO:0043094,GO:0043173,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046368,GO:0046483,GO:0047341,GO:0050201,GO:0055086,GO:0070568,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.GDP-L-fucose salvage
EggNOG OGsCOG2605@1,KOG4644@2759
EC2.7.1.52,2.7.7.30
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionL-fucokinase
Ec32 orthologEc-12_008200.1
Exons8
Model size3243
Cds size1518
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12956.2160.1prot_H-elongata_contig12956.2160.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12956 822..5926 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929770.0424213-UTR-H-elongata_contig12956:627..8211622929770.0424213-UTR-H-elongata_contig12956:627..821Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12956 628..821 +
1691679150.9613683-UTR-H-elongata_contig12956:627..8211691679150.9613683-UTR-H-elongata_contig12956:627..821Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12956 628..821 +
1622929770.1689124-UTR-H-elongata_contig12956:5926..66161622929770.1689124-UTR-H-elongata_contig12956:5926..6616Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12956 5927..6616 +
1691679151.0363016-UTR-H-elongata_contig12956:5926..66161691679151.0363016-UTR-H-elongata_contig12956:5926..6616Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12956 5927..6616 +
1622929770.1891634-UTR-H-elongata_contig12956:6772..76131622929770.1891634-UTR-H-elongata_contig12956:6772..7613Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12956 6773..7613 +
1691679151.0443974-UTR-H-elongata_contig12956:6772..76131691679151.0443974-UTR-H-elongata_contig12956:6772..7613Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12956 6773..7613 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929770.0577667-CDS-H-elongata_contig12956:821..10961622929770.0577667-CDS-H-elongata_contig12956:821..1096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12956 822..1096 +
1691679150.9733791-CDS-H-elongata_contig12956:821..10961691679150.9733791-CDS-H-elongata_contig12956:821..1096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12956 822..1096 +
1622929770.0734553-CDS-H-elongata_contig12956:2333..26021622929770.0734553-CDS-H-elongata_contig12956:2333..2602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12956 2334..2602 +
1691679150.9830198-CDS-H-elongata_contig12956:2333..26021691679150.9830198-CDS-H-elongata_contig12956:2333..2602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12956 2334..2602 +
1622929770.09014-CDS-H-elongata_contig12956:3140..33631622929770.09014-CDS-H-elongata_contig12956:3140..3363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12956 3141..3363 +
1691679150.9925315-CDS-H-elongata_contig12956:3140..33631691679150.9925315-CDS-H-elongata_contig12956:3140..3363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12956 3141..3363 +
1622929770.1125429-CDS-H-elongata_contig12956:3616..37331622929770.1125429-CDS-H-elongata_contig12956:3616..3733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12956 3617..3733 +
1691679151.0017128-CDS-H-elongata_contig12956:3616..37331691679151.0017128-CDS-H-elongata_contig12956:3616..3733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12956 3617..3733 +
1622929770.1263673-CDS-H-elongata_contig12956:4183..42541622929770.1263673-CDS-H-elongata_contig12956:4183..4254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12956 4184..4254 +
1691679151.0107465-CDS-H-elongata_contig12956:4183..42541691679151.0107465-CDS-H-elongata_contig12956:4183..4254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12956 4184..4254 +
1622929770.142618-CDS-H-elongata_contig12956:4639..49321622929770.142618-CDS-H-elongata_contig12956:4639..4932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12956 4640..4932 +
1691679151.0206246-CDS-H-elongata_contig12956:4639..49321691679151.0206246-CDS-H-elongata_contig12956:4639..4932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12956 4640..4932 +
1622929770.1572301-CDS-H-elongata_contig12956:5656..59261622929770.1572301-CDS-H-elongata_contig12956:5656..5926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12956 5657..5926 +
1691679151.0287917-CDS-H-elongata_contig12956:5656..59261691679151.0287917-CDS-H-elongata_contig12956:5656..5926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12956 5657..5926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12956.2160.1

>prot_H-elongata_contig12956.2160.1 ID=prot_H-elongata_contig12956.2160.1|Name=mRNA_H-elongata_contig12956.2160.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=506bp
MDLLLDHLTRLFGSGLAPGSLVVTACDVMMLIPSHVAARVDWSMGGGGAV
AGLAIAADAGKYAPNHGVYCLEDGGLNRDDEGDKCGVASVREYLQKPSFV
VAKTSGAFLAPSGSTHPEVAIDSGVVVFSGEATAALICLASSEILRGCTS
RGVNDGAKPLRLELYSDLLLALKTSSSGGGEGGFEAYLAACGPALAPNHP
LSLARKQMWNSLKGFPLGALLLRGATFVHLGTTPELMEMATFRLPDFVEP
FSLMSKAGSLLGAACSVETDPPAVVINSNLQGAGVVAGGAVVEHCLFEGD
GWEIGAGSLVSGVRSLASDHRLRLRSGMCLQQTDLGHLAQMKEEEERTED
VEMKDKGKGKSFVVSLFGVSDDIKAHYSKEKARICGARWKAFFAYSGATV
EDIWRGVEEPDRKLWSARLFPVLSVEPVEGRYGNAEVFMWMQHVQEHYAT
ATSSEAAPPPGAVEATKAWLAAERLSFKEILARANPAAEFQWRRRLEEDI
RGGGR*
back to top

mRNA from alignment at H-elongata_contig12956:628..7613+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12956.2160.1 ID=mRNA_H-elongata_contig12956.2160.1|Name=mRNA_H-elongata_contig12956.2160.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6986bp|location=Sequence derived from alignment at H-elongata_contig12956:628..7613+ (Himanthalia elongata Himel1 dioecious)
AGATAGACGAAGCCCTCAAGGCAGCGAAAGCTGCCGACAAAAAGGACCCG CAGACCGGTGGACTCTGCACCTCCCGCGTCCTCCTGGTGCACAGCGGGGG CGACAGCCAGCGATCCCCGACCCAGTGTGTCTGCGGCAAGGCTTGGTCGG CACTGAACAGCTGCGGAGACGGCAGCGGCACCTGCAACACGCCGATGGAC CTGCTGCTCGACCACCTCACCCGTCTGTTCGGCTCCGGGTTAGCCCCGGG GTCTCTGGTTGTCACCGCATGCGACGTGATGATGCTGATCCCCTCGCACG TGGCCGCCAGGGTGGATTGGTCGATGGGGGGCGGCGGCGCGGTGGCGGGT CTGGCGATAGCCGCTGACGCTGGAAAGTATGCCCCGAATCATGGTGTGTA CTGTCTCGAAGACGGCGGTCTCAACCGAGATGACGAAGGCGACAAGTGTG GCGTCGCCAGCGTGAGGGAGTGAGTACTGTATCTTTGATCTGGATGGGGA TATTGTTTTGATAGTTCGTCGTCTGAAGTGCGCGCACGATAAGCGGACGA TAAGCGGACGGTAAGCGGAGGTATGCCTTGATGCTGCAGCAAATTTTGGT GCGACTTGATTCAGCCATCGGTCGCGAAATATTGGTGAGCCTCCCCCCCA CGCCTTCACCGAGACCTACAGGCCCCTGTTTTCGATGTTCGAGGGTAGAA TTAGTCGAGGTAGGTTTGGCTCTTTTGACATGGCACTGTAAAACTGATAT CTATCTATATCTCTCTATATATATACCTACCGGGCATGGTAAAGTTCATG CAGTGTGCCCTGTGAGCTCCAGAGGCCTCGGTCGAAGAATTTTGTCGATC CCCAACGGGGTGAAACGCATAACATTATATATTACATTATGTAAGATGCC TGCTGCACAGTGGAACAGTGGATTGTTGGAAGACCCTGGAGCAATCATTA ACTCGAAAGTATTCAGATTATAGTACGGAGAGTATCACGAGCTAGTACAT ACCGATGTGCATCTTGTGCGCGTGCGTCGCTCAAGCATTCCTCGCGGAGA TGACAGTCCCTTTTTGGTACTCAAAGTAAAATCGCGCCATTTAGCCCTCC GGTGTGTCTAATCAACCCATGGCACATCGGGTGTGGCATTGTAAACAAAG TCTGGCCGGAAACCCCCCGACATATCCCTCCGCCCTCGCATTGTTAGGAT GCTGTAGTGGTTCAGTTGGTAACCTCGAAACCTTCTGACGTCGGGACGTG AGTTCGAATCTCGGCGCATTCACACGAACTGGGATTTTCTCTCACATCAT GCCCAACAAGTCGAGCACGGTTATTTGGTGGGTACACAAAATTCGACTTC ACGGTCAATAAGGGAAAGGGACGGCTGAATCATTCTCGCGACAAAAAAAT TAAGACAAGCACCGCAGAAGGAAGGTGGAAAAATCCTGTGTAACCTTCCT CATGTGTGAACCCGACTGTTAATAGTGCGTCCACAAGAAGACTATGACGT CCAAAATAAATGGGATGATGACAACAAAAAGTGTTCTGTCCGCCAGGTTA GCACAAGTACCCCAACAGTGCCACGTACGCAATGCGAGACTAAGTCGGCC AATCAGCGCCTGGACCTAGTAGCAGTCGCAAGGGCTTAGTTAACAATTTG CCCTACGATTATCTCGATTATCTCGGGTAAAACAATCCAAATACGCACTT GCTCAGGTACCTACAGAAGCCGTCCTTTGTCGTTGCGAAGACATCTGGCG CCTTCCTCGCCCCCTCTGGATCCACTCATCCTGAGGTGGCCATCGACTCC GGGGTGGTAGTTTTTTCCGGAGAGGCCACCGCCGCGCTCATCTGCCTGGC GTCCTCGGAGATACTCCGGGGTTGCACGTCCAGGGGGGTAAATGATGGTG CCAAGCCACTCAGGCTAGAGCTGTACTCGGACCTTCTCCTGGCGCTCAAG ACGAGCTCCTCCGGCGGGGGAGAAGGTAAAAAAACGCTTTGAATGATTCT GGGACCACGGAATGGAGAGTATTATGGCAGTATAGGAAGGCGTTTTGACG ATTCCGGTTTGTGCAGCAAAAGTGTTGTGCGAGTACGCTGCGGTGGCGCA GGCGACTGCCATATACCGTGTGCCGCCTTCTTGTCAGCAGTATATAGTCT AGTAGTATACATTATGCATACACCCTTTCGCCGACCAGAAGCTAAGCTTC TCAACTGCTGCACACAGTAAATCTATGACATATGAACACCATGGGCTTCA ATGCTTACGGTAAAGCTATGACGTATGAATACTATGGGTTTTAATGCATA CGGTAAAGCTAGGATGCGGTGCGAGCTTCAATTCCGTCCGCTTTGTACAC CGGCCTCGCTCGCGTCACACTCATCCCTCGCGTAGGAATCAAAACACCGC CGATCCGTCCATGACCTATGTTCTATCATTCTGTCGTTCTGTTGTGTCCT TGATTATTTATCGTTCTTTACAAAGCCTATGATCTCTCTTTATCGCCCTA TTTCTCTGCGCAGGAGGGTTCGAGGCCTACCTCGCCGCGTGTGGTCCCGC TCTGGCCCCTAATCACCCGCTCTCTTTGGCCAGAAAGCAAATGTGGAACT CCCTTAAAGGATTCCCGCTGGGGGCGCTGTTGCTCCGGGGAGCGACCTTC GTGCACCTGGGAACGACTCCTGAGTTGATGGAGATGGCCACCTTCCGACT CCCGGACTTTGTGGAGCCATTCTCCCTGATGTCAAAGTGCGATGACCACT CGTGGCGAGGGAGATGTTCTGGGTGATCGGTGTTGCTGTGACAGACCGAT CGCTCTACAAATGGTACCATATTCTATCCTCCAGCTGCACGCACCCCGTC GCGATATGACGTCACTCGCTGGATTCAGCTGGACCCGATATACACCGTTT CATTAGTTACACCGAGCGGATGGATTCCCACCAATCCGCGTTTTCGGTGA CGATCGCTCCTTTCCCTCCTGGTCGGTAATGGTACACAGGGCCGGTAGCC TGCTTGGAGCCGCGTGCTCCGTGGAAACAGATCCTCCCGCCGTGGTGATC AATAGCAACCTCCAAGGAGCTGGCGTGGTCGCCGGAGGGGCTGTGGTGGA GCACTGGTAAGTTGTTCTTTGAAGGTCTTCGTTTTCTAAGACCCACGCGC TATACACAGTTATGGTTTGTATCTGATGCGCTTTGGGGGGGGGGGGCATT GACCTTCGAGCTCGGAAATTAGCGGTTGAAATCGGTCCGTTAGTGTCAGT GCTAGGTCAAAGGTGGGAATATTAACCTCGTCCTTAATATATACGGTACT AACAAAGGGAATATTGTATTCTTCATCATATTCAACATATTCAACATATT CAAAAGTTGGGAAATGGAAAAGGTGGCCGTAGCATAATACAGCATATCAC AGCAGCACAGCACGGTGCGGGTAGTGGTGATAATCATTTCGCATTTCGAT AAGCACTTCGACTGATTCCATCCGTTAGCTTCGTCCACTACACATTGTCC ATTTCTCATTGCCTATCTGTCGGTGGTTCATGGACGGATTGCGCCGTTCG TCATAGCCTGTTCGAGGGAGATGGTTGGGAGATCGGCGCCGGAAGCCTCG TCAGCGGAGTTCGTTCTCTCGCGTCAGGCAAGTAGACGCAAGGTCGACCC ATTTCAGGTCCTCCGCTGGCTGTCACAGTCATAATTTTCGCCGTGCAATG GCTATACTTTCGGTGCGGCGTGTTGATTCAATTACTACTCTCTGACATAT TCGCCCAGTGTGCTGCGCTAACCAGCTTAGCCGACCCTGTCCAAACACCA TTAATATCAGTAATATCAGTAACATCCTCAGGCGGCTATAAATAGTGAAT GTAGTGGCTATATTGACTTTCGCAGGTTTTGAGTCCCCCGCGCCCACTGA CGGTGTCCCCATCCCCTCACCCCCTCCGAATATGCATGTTTCCCACGGGG ATTACCAAAACTGCTCCCCTGTTGACGGATATTCGTTCACCGTATCCGAG GTCATCCAATAGATCACCGACTCCGACTACGCAGCGGTATGTGTCTCCAG CAGACGGACCTTGGTCATCTTGCCCAGATGAAGGAAGAGGAAGAGAGGAC GGAAGATGTCGAGATGAAGGACAAGGGCAAGGGCAAGTCCTTCGTGGTGA GCCTATTCGGTGTGAGTGATGACATCAAGGCGCACTATTCAAAGGAGAAG GCTAGGATCTGCGGCGCTCGTTGGAAGGCGTTCTTTGCGTATTCAGGCGC GACTGTGGAGGATATATGGCGGGGCGTGGAAGAGCCGGACCGCAAGCTGT GGTCGGTGAGTGCCGGAGGCGTAGAGGGATCGATTTCCGACTGTAGGAAG TCTATGTGCTGGTCGGTGGTGATCGATGGACAGGGTGGTGGTGATTGACA TGCCTGTACTGTACTTTTTCAATCCACAAGCTGGTAAAAAATAGTAAACA CTCGCATGATTCCGTTTTTCTGTTTTGGTCTTTGATAGAGGGGGCGGGAT GGCTTGTGTAATCTTAATATACTAATTAGAGTATACGGACAAACGATTAC TTTAGTATACTCACTACAACATGCAGCCGAGCGATGACTTTAGGTTTCTA AGGGCAATATACGACTGAACGATGACTATAGTATACTAGCTACAGTATAC CACCGAACGATGATTTGAGTATATACCACCGAACGATGACTTGAGTATAC TAACTATAGAATACGATCGAACAATTATTTGAGTATACTAATTACAGTAT ACAATCGAACGATGACTTTAGTAAATTAATAACACTATATGGCCGAACGA TGGCTTAAGTATACTAACTACAGTATACCACCGAAGGTGCGAACGTGGCT AGATGAAATACGAAGTACTTGTATTATAATATATTTAATTAAGCTGTCGC GCTCCCCCCCCGCTCCCCCCTACCTCGAAATGTCCTTAACACCCTTAACA CCCCTCGACGAAGGCCAGGGATACTTGACGACGCTGCCTCGTTACACGAC TCTTGCTGCCTACCTCCGCTTCCCCCCAGGCTCGTCTGTTTCCCGTGCTG TCAGTGGAGCCTGTGGAAGGGCGGTACGGGAACGCCGAGGTATTTATGTG GATGCAGCACGTGCAAGAACACTACGCCACCGCCACGAGCTCGGAGGCAG CCCCGCCCCCGGGAGCTGTGGAGGCCACCAAGGCGTGGCTCGCCGCCGAG CGTCTCTCGTTCAAGGAAATCCTGGCCAGGGCAAACCCCGCCGCGGAGTT CCAATGGAGGAGGCGTCTTGAGGAAGACATTCGAGGGGGCGGGAGGTAGG CAACAAACGAAGGAGAATGGGGCATAGGATGTTGGGTTTGGGCTTGTCTT CGATAGTTTATTTCCTTTCCTTGTCATATCCCGCCCCGTACTCCGTGAGT GTTCATTTGTCTCGACGCCATTTTTTTTTTATTCCTAAGTTGCATGGGGG CACGCATGTGGGGGAGCCACGTAGCGGCGAGTGATCCGACGGTTTGTGAA ATTTTGGCCGGCTGATTGGTAAGCTCTCTGTCGCTGAACCCGCTTTGTGT AGCGGTGCTCTTGTGCATTTCTTGTCCATTTCCGGCTATCGGTAGATATT TTGTGTGGTGATGTGATGTGGTGTGGCTATTGGCAGCCCGCCCCGATTTC TTATGAGAACATCGTAACACAAACGAAAACAAGCAGGACATTGCTTTGAA TTGGAAAATTACTGACTTTGCTTTTTAGCTCTGTCGAGGAAAAATTCAGG CGGTTTTCAATCGTTAGCAGTGGCACTGTAATGCTTTCGGACGCATTGGG GGGGGGGGGCATCCGTGTCTGCCTGGGGGGAAGGATGAGTGGTAGGGGGG AATAGCTCTCGAAAACGAGGCTTTAGACTCTAATTAGTGTATGACTAAAT GCGTGGAGGACGCACATCAGACGTTTTGAGCTTTGTTGATGCGCCTGCTT CGGCAAGAACGGCTACAGTATCATTGACGACTATGGAAAGTTTCGAGTTT CTCTGCGTAAGATTAAGACTCTTGACTGGGCATCGTGATCTCCTTGGGAA GCATGGTCGTGAAGGACGCACATCAGACGTTTTGAGCTTTGTTGATGCGC CTGCTTCGGCAAGAACGGCTACAGTATCATTGACGACTATGGAAGGTTTC GAGTTTCTCTGCGCAAGATTAAGACTCTCGACTGGGCATCGTGATCTCCT TGGGAAGCATGGTCGTGGTCGACCCTGGATTTTTTTGTCCTCGTGTTGCT TTTGGAGGTGTATTACCACCATGATGTCTTGTCGGGATTTGGTTGACGAT TGTGATCATAGCATAATCATAATCCTTGCGTCCCTTAAGATTGTGTTGGT GCCTCTCCTATGTTGCCGGGGGTGTTATTTTTATTTAAAAGACTTGATTA CAGTATTGATGGCAATCGTATGTTCGTTTGTTCGTGTAATGGTTCGCTGT TTGTCGTGCTGAGGAACAAGGGTAAGGATAATACTGATAATAATGCTAAG GATAAGGATAAGAGTATGCCGTGCTGTGGTCTCCGACCAAAAGTGTTAAT CCTTTGAAGTGAGGGTTGGGGTTAGGGTCGCAATCCGAGGCACGAGCCAG TATTTTTTTTGCCATAATATTTCCGATAACCTACTCTGAGACGTGGTTTA TAGCAGTGGCAGCACCGATTTAAGGTATCAAGAGATTCCTGACTCTCACG TAGGCTAGGCTGATGCGAGCTGAAACGGAAGGACTGACCGACCGGATGCT GCATGGATGTGTAGATGTTTGTCCCGATAAATATAAATAAATATCCAGTA TATTATATGTGTTTTTGTATTGCTTGTTCGGAAAAGGCAAAACAGCAAGT CAGTAGGACCTGCCTTGTCGTGCGCAGAGTCATCCAGCCATCTTCCACAA GCCACGAGTCATTAGTCACTAGTCATTAGTGGGGATGATACCGATGGCGG AGCTCTGGTCGCTTAATGCAAGTACACCCAGCAACG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig12956:628..7613+

>mRNA_H-elongata_contig12956.2160.1 ID=mRNA_H-elongata_contig12956.2160.1|Name=mRNA_H-elongata_contig12956.2160.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3036bp|location=Sequence derived from alignment at H-elongata_contig12956:628..7613+ (Himanthalia elongata Himel1 dioecious)
ATGGACCTGCTGCTCGACCACCTCACCCGTCTGTTCGGCTCCGGGTTAGC
CCCGGGGTCTCTGGTTGTCACCGCATGCGACGTGATGATGCTGATCCCCT
CGCACGTGGCCGCCAGGGTGGATTGGTCGATGGGGGGCGGCGGCGCGGTG
GCGGGTCTGGCGATAGCCGCTGACGCTGGAAAGTATGCCCCGAATCATGG
TGTGTACTGTCTCGAAGACGGCGGTCTCAACCGAGATGACGAAGGCGACA
AGTGTGGCGTCGCCAGCGTGAGGGAATGGACCTGCTGCTCGACCACCTCA
CCCGTCTGTTCGGCTCCGGGTTAGCCCCGGGGTCTCTGGTTGTCACCGCA
TGCGACGTGATGATGCTGATCCCCTCGCACGTGGCCGCCAGGGTGGATTG
GTCGATGGGGGGCGGCGGCGCGGTGGCGGGTCTGGCGATAGCCGCTGACG
CTGGAAAGTATGCCCCGAATCATGGTGTGTACTGTCTCGAAGACGGCGGT
CTCAACCGAGATGACGAAGGCGACAAGTGTGGCGTCGCCAGCGTGAGGGA
GTACCTACAGAAGCCGTCCTTTGTCGTTGCGAAGACATCTGGCGCCTTCC
TCGCCCCCTCTGGATCCACTCATCCTGAGGTGGCCATCGACTCCGGGGTG
GTAGTTTTTTCCGGAGAGGCCACCGCCGCGCTCATCTGCCTGGCGTCCTC
GGAGATACTCCGGGGTTGCACGTCCAGGGGGGTAAATGATGGTGCCAAGC
CACTCAGGCTAGAGCTGTACTCGGACCTTCTCCTGGCGCTCAAGACGAGC
TCCTCCGGCGGGGGAGAAGGTACCTACAGAAGCCGTCCTTTGTCGTTGCG
AAGACATCTGGCGCCTTCCTCGCCCCCTCTGGATCCACTCATCCTGAGGT
GGCCATCGACTCCGGGGTGGTAGTTTTTTCCGGAGAGGCCACCGCCGCGC
TCATCTGCCTGGCGTCCTCGGAGATACTCCGGGGTTGCACGTCCAGGGGG
GTAAATGATGGTGCCAAGCCACTCAGGCTAGAGCTGTACTCGGACCTTCT
CCTGGCGCTCAAGACGAGCTCCTCCGGCGGGGGAGAAGGAGGGTTCGAGG
CCTACCTCGCCGCGTGTGGTCCCGCTCTGGCCCCTAATCACCCGCTCTCT
TTGGCCAGAAAGCAAATGTGGAACTCCCTTAAAGGATTCCCGCTGGGGGC
GCTGTTGCTCCGGGGAGCGACCTTCGTGCACCTGGGAACGACTCCTGAGT
TGATGGAGATGGCCACCTTCCGACTCCCGGACTTTGTGGAGCCATTCTCC
CTGATGTCAAAGAGGGTTCGAGGCCTACCTCGCCGCGTGTGGTCCCGCTC
TGGCCCCTAATCACCCGCTCTCTTTGGCCAGAAAGCAAATGTGGAACTCC
CTTAAAGGATTCCCGCTGGGGGCGCTGTTGCTCCGGGGAGCGACCTTCGT
GCACCTGGGAACGACTCCTGAGTTGATGGAGATGGCCACCTTCCGACTCC
CGGACTTTGTGGAGCCATTCTCCCTGATGTCAAAGGCCGGTAGCCTGCTT
GGAGCCGCGTGCTCCGTGGAAACAGATCCTCCCGCCGTGGTGATCAATAG
CAACCTCCAAGGAGCTGGCGTGGTCGCCGGAGGGGCTGTGGTGGAGCACT
GGGCCGGTAGCCTGCTTGGAGCCGCGTGCTCCGTGGAAACAGATCCTCCC
GCCGTGGTGATCAATAGCAACCTCCAAGGAGCTGGCGTGGTCGCCGGAGG
GGCTGTGGTGGAGCACTGCCTGTTCGAGGGAGATGGTTGGGAGATCGGCG
CCGGAAGCCTCGTCAGCGGAGTTCGTTCTCTCGCGTCAGCCTGTTCGAGG
GAGATGGTTGGGAGATCGGCGCCGGAAGCCTCGTCAGCGGAGTTCGTTCT
CTCGCGTCAGATCACCGACTCCGACTACGCAGCGGTATGTGTCTCCAGCA
GACGGACCTTGGTCATCTTGCCCAGATGAAGGAAGAGGAAGAGAGGACGG
AAGATGTCGAGATGAAGGACAAGGGCAAGGGCAAGTCCTTCGTGGTGAGC
CTATTCGGTGTGAGTGATGACATCAAGGCGCACTATTCAAAGGAGAAGGC
TAGGATCTGCGGCGCTCGTTGGAAGGCGTTCTTTGCGTATTCAGGCGCGA
CTGTGGAGGATATATGGCGGGGCGTGGAAGAGCCGGACCGCAAGCTGTGG
TCGATCACCGACTCCGACTACGCAGCGGTATGTGTCTCCAGCAGACGGAC
CTTGGTCATCTTGCCCAGATGAAGGAAGAGGAAGAGAGGACGGAAGATGT
CGAGATGAAGGACAAGGGCAAGGGCAAGTCCTTCGTGGTGAGCCTATTCG
GTGTGAGTGATGACATCAAGGCGCACTATTCAAAGGAGAAGGCTAGGATC
TGCGGCGCTCGTTGGAAGGCGTTCTTTGCGTATTCAGGCGCGACTGTGGA
GGATATATGGCGGGGCGTGGAAGAGCCGGACCGCAAGCTGTGGTCGGCTC
GTCTGTTTCCCGTGCTGTCAGTGGAGCCTGTGGAAGGGCGGTACGGGAAC
GCCGAGGTATTTATGTGGATGCAGCACGTGCAAGAACACTACGCCACCGC
CACGAGCTCGGAGGCAGCCCCGCCCCCGGGAGCTGTGGAGGCCACCAAGG
CGTGGCTCGCCGCCGAGCGTCTCTCGTTCAAGGAAATCCTGGCCAGGGCA
AACCCCGCCGCGGAGTTCCAATGGAGGAGGCGTCTTGAGGAAGACATTCG
AGGGGGCGGGAGGTAGGCTCGTCTGTTTCCCGTGCTGTCAGTGGAGCCTG
TGGAAGGGCGGTACGGGAACGCCGAGGTATTTATGTGGATGCAGCACGTG
CAAGAACACTACGCCACCGCCACGAGCTCGGAGGCAGCCCCGCCCCCGGG
AGCTGTGGAGGCCACCAAGGCGTGGCTCGCCGCCGAGCGTCTCTCGTTCA
AGGAAATCCTGGCCAGGGCAAACCCCGCCGCGGAGTTCCAATGGAGGAGG
CGTCTTGAGGAAGACATTCGAGGGGGCGGGAGGTAG
back to top