mRNA_H-elongata_contig129493.2155.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129493.2155.1
Unique NamemRNA_H-elongata_contig129493.2155.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig129493.2155.1 vs. uniprot
Match: D7FXW6_ECTSI (ABC transporter ATP-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW6_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 6.510e-39
Identity = 71/96 (73.96%), Postives = 80/96 (83.33%), Query Frame = 1
Query:    1 KTCLFQLVLGLVKADAGELMFQGRPLDEWETFAYRERVAWISQVAARFALTAGENIGAGHPNAFSNRPLWERAADISGASAAIESLPMGYDTPLQN 288
            KT L QL LGL+KAD GE MFQGRPL EWET AYRERVAW+SQV+ RF LTAGENIGAG P+ FSNR LW RAA +SGA+ AIESLP+GYDT L++
Sbjct:  984 KTALLQLALGLMKADKGEAMFQGRPLQEWETGAYRERVAWLSQVSGRFGLTAGENIGAGDPSEFSNRELWARAAGLSGANTAIESLPLGYDTLLED 1079          
BLAST of mRNA_H-elongata_contig129493.2155.1 vs. uniprot
Match: A0A6H5KVL8_9PHAE (ABC transporter domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.730e-13
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 KTCLFQLVLGLVKADAGELMFQGRPLDEWETFAYRERVAWISQVA 135
            KT L QL LGL+KAD GE MFQGRPL EWET AYRERVAW+SQ +
Sbjct:  821 KTALLQLALGLMKADEGEAMFQGRPLQEWETGAYRERVAWLSQAS 865          
BLAST of mRNA_H-elongata_contig129493.2155.1 vs. uniprot
Match: UPI001FD53501 (ABC transporter ATP-binding protein/permease n=1 Tax=Caballeronia sp. TF1N1 TaxID=2878153 RepID=UPI001FD53501)

HSP 1 Score: 71.6 bits (174), Expect = 3.180e-12
Identity = 37/94 (39.36%), Postives = 50/94 (53.19%), Query Frame = 1
Query:    1 KTCLFQLVLGLVKADAGELMFQGRPLDEWETFAYRERVAWISQVAARFALTAGENIGAGHPNAFSNRPLWERAADISGASAAIESLPMGYDTPL 282
            KT L +L+  L    AG ++  G  L EW+ +  R R+  I Q   R+   AGEN+G G   AFS+R  W  AA    A+A IE +  GY+T L
Sbjct:  391 KTTLIKLLTRLYTPSAGRILLDGSDLQEWDEYTLRRRIGVIFQDFIRYQFKAGENLGVGDIEAFSDRTRWSEAAQKGMAAAFIEQMENGYETQL 484          
BLAST of mRNA_H-elongata_contig129493.2155.1 vs. uniprot
Match: A0A1H1H7X5_9BURK (ATP-binding cassette, subfamily B/ATP-binding cassette, subfamily C n=1 Tax=Paraburkholderia fungorum TaxID=134537 RepID=A0A1H1H7X5_9BURK)

HSP 1 Score: 70.5 bits (171), Expect = 8.080e-12
Identity = 37/94 (39.36%), Postives = 51/94 (54.26%), Query Frame = 1
Query:    1 KTCLFQLVLGLVKADAGELMFQGRPLDEWETFAYRERVAWISQVAARFALTAGENIGAGHPNAFSNRPLWERAADISGASAAIESLPMGYDTPL 282
            KT L +L+  L    +G ++  G  L EW+ +A R R+  I Q   R+   AGEN+G G   AFS+R  W  AA    A+A IE +  GY+T L
Sbjct:  393 KTTLIKLLTRLYTPSSGRILLDGSDLQEWDEYALRRRIGVIFQDFIRYQFKAGENLGVGDIEAFSDRNRWTEAATKGMAAAFIERMENGYETQL 486          
BLAST of mRNA_H-elongata_contig129493.2155.1 vs. uniprot
Match: UPI00158B54C2 (ABC transporter ATP-binding protein/permease n=1 Tax=Microbacterium sp. Marseille-Q2854 TaxID=2736605 RepID=UPI00158B54C2)

HSP 1 Score: 66.6 bits (161), Expect = 1.810e-10
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    1 KTCLFQLVLGLVKADAGELMFQGRPLDEWETFAYRERVAWISQVAARFALTAGENIGAGHPNAFSNRPLWERAADISGASAAIESLPMGYDTPL 282
            K+ L +LV GL +   GE+ + G P+    +   R   A I Q   R+A+ A  NI  G P+   ++   ERAA+ SGA+AAI+SLP GYDT L
Sbjct:  395 KSTLAKLVAGLYEPSTGEIRWDGMPVTPATSSTVRASTAVIFQDFVRYAVDARSNIAFGRPDVEVDQAEVERAAEASGAAAAIDSLPDGYDTTL 488          
BLAST of mRNA_H-elongata_contig129493.2155.1 vs. uniprot
Match: A0A7Y2BJA2_9DELT (ABC transporter ATP-binding protein n=3 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A7Y2BJA2_9DELT)

HSP 1 Score: 65.5 bits (158), Expect = 4.600e-10
Identity = 36/94 (38.30%), Postives = 47/94 (50.00%), Query Frame = 1
Query:    1 KTCLFQLVLGLVKADAGELMFQGRPLDEWETFAYRERVAWISQVAARFALTAGENIGAGHPNAFSNRPLWERAADISGASAAIESLPMGYDTPL 282
            KT L +L+  L +   G +   G  L+ W     R RV  I Q   R+ L AGEN+G G    FS+   W+ AA+   A   IE LP GY+T L
Sbjct:  398 KTTLIKLLTRLYQPTEGRITLDGLELNAWSLDVLRNRVGVIFQDFVRYQLVAGENVGVGDAQGFSDPERWQTAAEKGMAHEFIERLPSGYETQL 491          
BLAST of mRNA_H-elongata_contig129493.2155.1 vs. uniprot
Match: A0A5P9P0P4_9EURY (ATP-binding cassette domain-containing protein n=1 Tax=Natronorubrum aibiense TaxID=348826 RepID=A0A5P9P0P4_9EURY)

HSP 1 Score: 64.3 bits (155), Expect = 1.170e-9
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    1 KTCLFQLVLGLVKADAGELMFQGRPLDEWETFAYRERVAWISQVAARFALTAGENIGAGHPNAFSNRPLWERAADISGASAAIESLPMGYDTPLQNEG 294
            K+ +  L+  L   D GE+   G P+DE++T A+R R+A++ Q    F  T  EN+  G+P+A   R   E A DI+  +  ++ LP GYDT L ++G
Sbjct:  400 KSTIAALLARLYAPDDGEITADGTPIDEFDTAAWRSRIAFVRQDPYIFNETLLENVTVGNPDA--TRAAVEEACDIAQVTEFLDELPDGYDTELGDDG 495          
BLAST of mRNA_H-elongata_contig129493.2155.1 vs. uniprot
Match: A0A7V7ZFS8_9CHLR (Thiol reductant ABC exporter subunit CydD n=1 Tax=Chloroflexia bacterium SDU3-3 TaxID=2651839 RepID=A0A7V7ZFS8_9CHLR)

HSP 1 Score: 63.9 bits (154), Expect = 1.590e-9
Identity = 36/98 (36.73%), Postives = 57/98 (58.16%), Query Frame = 1
Query:    1 KTCLFQLVLGLVKADAGELMFQGRPLDEWETFAYRERVAWISQVAARFALTAGENIGAGHPNAFSNRPLWERAADISGASAAIESLPMGYDTPLQNEG 294
            K+ L  L+L   + DAG+++  G P+D+++T A+R  +A++ Q    F+ T  ENI  G P A  +  +   AA ++ A   I +LP GYDTPL  +G
Sbjct:  378 KSTLASLLLRFAQPDAGQILADGVPIDQFDTAAWRGCIAYVPQRPHLFSGTVLENIRLGRPAATMDEVV--AAAQVADAHRFIAALPQGYDTPLGEDG 473          
BLAST of mRNA_H-elongata_contig129493.2155.1 vs. uniprot
Match: A0A3D1SLH8_9CHLR (ABC transporter domain-containing protein n=1 Tax=Ktedonobacter sp. TaxID=1932716 RepID=A0A3D1SLH8_9CHLR)

HSP 1 Score: 63.2 bits (152), Expect = 2.360e-9
Identity = 38/94 (40.43%), Postives = 49/94 (52.13%), Query Frame = 1
Query:    1 KTCLFQLVLGLVKADAGELMFQGRPLDEWETFAYRERVAWISQVAARFALTAGENIGAGHPNAFSNRPLWERAADISGASAAIESLPMGYDTPL 282
            KT + +L+  L   D G++   GR + E++    RE V  I Q    + L A ENIG G      N  L + AA  SGA AAIE LP GY+T L
Sbjct:  118 KTTIVKLLTRLYDPDEGDIYIGGRNIKEYDLKELREEVGVIFQDYVTYHLNARENIGVGRVAEIDNLSLVDTAAQKSGAHAAIEKLPAGYETML 211          
BLAST of mRNA_H-elongata_contig129493.2155.1 vs. uniprot
Match: A0A352Y0D1_9CHLR (Multidrug ABC transporter permease n=1 Tax=Ktedonobacter sp. TaxID=1932716 RepID=A0A352Y0D1_9CHLR)

HSP 1 Score: 63.2 bits (152), Expect = 2.980e-9
Identity = 38/94 (40.43%), Postives = 49/94 (52.13%), Query Frame = 1
Query:    1 KTCLFQLVLGLVKADAGELMFQGRPLDEWETFAYRERVAWISQVAARFALTAGENIGAGHPNAFSNRPLWERAADISGASAAIESLPMGYDTPL 282
            KT + +L+  L   D G++   GR + E++    RE V  I Q    + L A ENIG G      N  L + AA  SGA AAIE LP GY+T L
Sbjct:  422 KTTIVKLLTRLYDPDEGDIYIGGRNIKEYDLKELREEVGVIFQDYVTYHLNARENIGVGRVAEIDNLSLVDTAAQKSGAHAAIEKLPAGYETML 515          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129493.2155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXW6_ECTSI6.510e-3973.96ABC transporter ATP-binding protein n=1 Tax=Ectoca... [more]
A0A6H5KVL8_9PHAE3.730e-1375.56ABC transporter domain-containing protein n=1 Tax=... [more]
UPI001FD535013.180e-1239.36ABC transporter ATP-binding protein/permease n=1 T... [more]
A0A1H1H7X5_9BURK8.080e-1239.36ATP-binding cassette, subfamily B/ATP-binding cass... [more]
UPI00158B54C21.810e-1041.49ABC transporter ATP-binding protein/permease n=1 T... [more]
A0A7Y2BJA2_9DELT4.600e-1038.30ABC transporter ATP-binding protein n=3 Tax=Deltap... [more]
A0A5P9P0P4_9EURY1.170e-936.73ATP-binding cassette domain-containing protein n=1... [more]
A0A7V7ZFS8_9CHLR1.590e-936.73Thiol reductant ABC exporter subunit CydD n=1 Tax=... [more]
A0A3D1SLH8_9CHLR2.360e-940.43ABC transporter domain-containing protein n=1 Tax=... [more]
A0A352Y0D1_9CHLR2.980e-940.43Multidrug ABC transporter permease n=1 Tax=Ktedono... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129493contigH-elongata_contig129493:739..1675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1.3e-33
Seed eggNOG ortholog2880.D7FXW6
KEGG rclassRC00912,RC01690
KEGG koko:K17842
KEGG ReactionR09782
KEGG Pathwayko00906,ko01100,map00906,map01100
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0055@2759
EC1.13.11.59
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Exons2
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929769.4789052-CDS-H-elongata_contig129493:738..9511622929769.4789052-CDS-H-elongata_contig129493:738..951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129493 739..951 -
1691679150.803531-CDS-H-elongata_contig129493:738..9511691679150.803531-CDS-H-elongata_contig129493:738..951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129493 739..951 -
1622929769.4960103-CDS-H-elongata_contig129493:1546..16751622929769.4960103-CDS-H-elongata_contig129493:1546..1675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129493 1547..1675 -
1691679150.8128886-CDS-H-elongata_contig129493:1546..16751691679150.8128886-CDS-H-elongata_contig129493:1546..1675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129493 1547..1675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129493.2155.1prot_H-elongata_contig129493.2155.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129493 739..1675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129493.2155.1

>prot_H-elongata_contig129493.2155.1 ID=prot_H-elongata_contig129493.2155.1|Name=mRNA_H-elongata_contig129493.2155.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
KTCLFQLVLGLVKADAGELMFQGRPLDEWETFAYRERVAWISQVAARFAL
TAGENIGAGHPNAFSNRPLWERAADISGASAAIESLPMGYDTPLQNEGGP
AMAAVGSKGSIIR*
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mRNA from alignment at H-elongata_contig129493:739..1675-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129493.2155.1 ID=mRNA_H-elongata_contig129493.2155.1|Name=mRNA_H-elongata_contig129493.2155.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=937bp|location=Sequence derived from alignment at H-elongata_contig129493:739..1675- (Himanthalia elongata Himel1 dioecious)
AAGACATGCTTGTTTCAGCTCGTGCTGGGGCTGGTCAAGGCGGACGCGGG GGAGCTGATGTTTCAAGGACGACCTCTCGATGAGTGGGAGACGTTTGCGT ACCGAGAGAGGGTGGCGTGGATTAGTCAGGTGAGCCGCGCTCGTCGTCCC GTCTGTGCGCTCCTCGTATAATAGTTGCCGCGAAACCGCCTTCCCTTCAA GTCTAAACCCTCCGAGGTTCGCGCGTCACTCCGGCGGGTCTCGCCAACCA AGACCAAGGCGACTCAAACTACAGTGCTTTGGTCGAAGTAGGAGTCCGAT TTCCTCTGCAGCATTATATACCATCATACAGTATACCGTTAAAAACGCAA TCCATGTCGAAATCGCCTGGTTTCATGCTAAGAACCCCGTAAATAAGAGC CGTCACCACACAGCACCGTAAACCAAACGGTACCCCTAGCAGCAAGCAGC CTCGCGACTGAAGCACGCGCGCACGCTTTTCTGGTGTATATTTTTTGTAA GTTATAGATGTTTCCAGGCACGCGATATAACGAACGAACGGTACTACTTG TAAGTCATAAGACAGAGCAACGGTACTACGAACGGCGCTACCCTGCTCGA AGAACTTGAAGATTCCTGCTGTCGGTACCATCGGTATATCTACATGAACA GCTGTGGCCCTTACGTCGACTCGGTCCCTGCATCTTTTCCATGCATGACA CCGCGTAATCTCGTCGTGCTTTAGGTCGCCGCCCGTTTCGCCTTGACCGC CGGCGAGAACATCGGTGCCGGGCATCCCAACGCCTTCTCCAACCGGCCGC TGTGGGAGAGGGCAGCGGACATCAGTGGCGCCAGCGCGGCGATCGAGTCT CTGCCCATGGGATACGACACGCCCCTGCAAAACGAGGGGGGTCCTGCGAT GGCGGCCGTGGGCTCCAAGGGGTCGATCATCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig129493:739..1675-

>mRNA_H-elongata_contig129493.2155.1 ID=mRNA_H-elongata_contig129493.2155.1|Name=mRNA_H-elongata_contig129493.2155.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig129493:739..1675- (Himanthalia elongata Himel1 dioecious)
AAGACATGCTTGTTTCAGCTCGTGCTGGGGCTGGTCAAGGCGGACGCGGG
GGAGCTGATGTTTCAAGGACGACCTCTCGATGAGTGGGAGACGTTTGCGT
ACCGAGAGAGGGTGGCGTGGATTAGTCAGAAGACATGCTTGTTTCAGCTC
GTGCTGGGGCTGGTCAAGGCGGACGCGGGGGAGCTGATGTTTCAAGGACG
ACCTCTCGATGAGTGGGAGACGTTTGCGTACCGAGAGAGGGTGGCGTGGA
TTAGTCAGGTCGCCGCCCGTTTCGCCTTGACCGCCGGCGAGAACATCGGT
GCCGGGCATCCCAACGCCTTCTCCAACCGGCCGCTGTGGGAGAGGGCAGC
GGACATCAGTGGCGCCAGCGCGGCGATCGAGTCTCTGCCCATGGGATACG
ACACGCCCCTGCAAAACGAGGGGGGTCCTGCGATGGCGGCCGTGGGCTCC
AAGGGGTCGATCATCAGGTGAGTCGCCGCCCGTTTCGCCTTGACCGCCGG
CGAGAACATCGGTGCCGGGCATCCCAACGCCTTCTCCAACCGGCCGCTGT
GGGAGAGGGCAGCGGACATCAGTGGCGCCAGCGCGGCGATCGAGTCTCTG
CCCATGGGATACGACACGCCCCTGCAAAACGAGGGGGGTCCTGCGATGGC
GGCCGTGGGCTCCAAGGGGTCGATCATCAGGTGA
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