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Homology
BLAST of mRNA_H-elongata_contig12943.2154.1 vs. uniprot
Match: D7FGW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW7_ECTSI) HSP 1 Score: 193 bits (490), Expect = 9.170e-56 Identity = 103/142 (72.54%), Postives = 119/142 (83.80%), Query Frame = 3
Query: 3 NIMARDNGVIPGESETTDSLVEQYRRHRSEIAKIPTYTDSILKMLKDIRKTVRASTRLQPGSTAFAQFLDEWWSSVVKFLQHSSIVVAEKNAREVMETLKSLKVKQEENKKREINRLLCKLDENADFGP--PARRLSELFTP 422
+IMA D+G IPGESE+TDSL+EQY+RHRSEI+KIP Y DSILKMLKDIRKTVRAS++LQPG+ +FAQFL+EWW+SVV+FLQ SSIV AEKNAREVM+TLK LK KQEE KKREI+RLL KLD+NA P LSE P
Sbjct: 141 SIMATDDGAIPGESESTDSLMEQYKRHRSEISKIPMYADSILKMLKDIRKTVRASSKLQPGTNSFAQFLEEWWASVVQFLQQSSIVEAEKNAREVMQTLKKLKGKQEEGKKREISRLLSKLDDNASIDQHLPVGYLSEELPP 282
BLAST of mRNA_H-elongata_contig12943.2154.1 vs. uniprot
Match: D7FGX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX8_ECTSI) HSP 1 Score: 180 bits (457), Expect = 3.500e-48 Identity = 92/136 (67.65%), Postives = 109/136 (80.15%), Query Frame = 3
Query: 3 NIMARDNGVIPGESETTDSLVEQYRRHRSEIAKIPTYTDSILKMLKDIRKTVRASTRLQPGSTAFAQFLDEWWSSVVKFLQHSSIVVAEKNAREVMETLKSLKVKQEENKKREINRLLCKLDENADFGPPARRLSE 410
N+MA DNG IPGESE+TD L++QYRRHR EI+KIP Y DSI+KMLKDIR+TV AS +LQPGS AF QFLDEWW+SVV+FL+ S IV AE+NAREVM+TLK LK KQEE KKRE++RL+ KL+ PP SE
Sbjct: 134 NVMANDNGAIPGESESTDGLIDQYRRHRDEISKIPFYADSIMKMLKDIRRTVNASAKLQPGSNAFTQFLDEWWASVVEFLEQSPIVDAERNAREVMQTLKKLKGKQEEFKKREMSRLMNKLEAQDKATPPMTPASE 269
BLAST of mRNA_H-elongata_contig12943.2154.1 vs. uniprot
Match: A0A6H5JCK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK0_9PHAE) HSP 1 Score: 177 bits (448), Expect = 6.600e-48 Identity = 91/134 (67.91%), Postives = 107/134 (79.85%), Query Frame = 3
Query: 9 MARDNGVIPGESETTDSLVEQYRRHRSEIAKIPTYTDSILKMLKDIRKTVRASTRLQPGSTAFAQFLDEWWSSVVKFLQHSSIVVAEKNAREVMETLKSLKVKQEENKKREINRLLCKLDENADFGPPARRLSE 410
MA DNG IPGESE+TD L++QYRRHR EI+KIP Y DSI+KMLKDIR+TV AS +LQPGS AF QFLDEWW+SVV+FL+ S IV AE+NAREVM+TLK LK KQEE KKRE++RL+ KL+ PP SE
Sbjct: 1 MANDNGAIPGESESTDGLIDQYRRHRDEISKIPFYADSIMKMLKDIRRTVNASAKLQPGSNAFTQFLDEWWASVVEFLEQSPIVDAERNAREVMQTLKKLKGKQEEFKKREMSRLMNKLEAQDKATPPMTPASE 134
BLAST of mRNA_H-elongata_contig12943.2154.1 vs. uniprot
Match: A0A6H5JA20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA20_9PHAE) HSP 1 Score: 176 bits (447), Expect = 9.160e-46 Identity = 102/177 (57.63%), Postives = 120/177 (67.80%), Query Frame = 3
Query: 3 NIMARDNGVIPGESETTDSLVEQYRRHRSEIAKIPTYTDSILKMLKDIRKTVRASTRLQPGSTAFAQFLDE--------------------------WWSSVVKFLQHSSIVVAEKNAREVMETLKSLKVKQEENKKREINRLLCKLDENADFGPPARRLSELFTPPRLHQATDGSP 455
+IMA D+G IPGESE+TD+L+EQY+RHRSEI+KIP Y D ILKMLKDIRKTVRAS++LQPG +FAQFL+E WW+SVV+FLQ SSIV AEKNAREVM+TLK LK KQEE KKREI+RLL KLD+NA + L + P L GSP
Sbjct: 156 SIMATDDGAIPGESESTDALIEQYKRHRSEISKIPMYADRILKMLKDIRKTVRASSKLQPGPNSFAQFLEEARPAPMFNRSLFVTLLPKCCSVASRKWWASVVQFLQQSSIVEAEKNAREVMQTLKKLKGKQEEGKKREISRLLSKLDDNASID---QHLPTGYLPEELPPKAAGSP 329
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1043 |
| Cds size | 1035 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929769.3630056-UTR-H-elongata_contig12943:3734..3742 | 1622929769.3630056-UTR-H-elongata_contig12943:3734..3742 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig12943 3735..3742 + |
| 1691679150.7496533-UTR-H-elongata_contig12943:3734..3742 | 1691679150.7496533-UTR-H-elongata_contig12943:3734..3742 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig12943 3735..3742 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929769.376875-CDS-H-elongata_contig12943:3742..3813 | 1622929769.376875-CDS-H-elongata_contig12943:3742..3813 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12943 3743..3813 + |
| 1691679150.7602985-CDS-H-elongata_contig12943:3742..3813 | 1691679150.7602985-CDS-H-elongata_contig12943:3742..3813 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12943 3743..3813 + |
| 1622929769.4021552-CDS-H-elongata_contig12943:4903..5039 | 1622929769.4021552-CDS-H-elongata_contig12943:4903..5039 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12943 4904..5039 + |
| 1691679150.76877-CDS-H-elongata_contig12943:4903..5039 | 1691679150.76877-CDS-H-elongata_contig12943:4903..5039 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12943 4904..5039 + |
| 1622929769.4171793-CDS-H-elongata_contig12943:5699..5777 | 1622929769.4171793-CDS-H-elongata_contig12943:5699..5777 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12943 5700..5777 + |
| 1691679150.7776206-CDS-H-elongata_contig12943:5699..5777 | 1691679150.7776206-CDS-H-elongata_contig12943:5699..5777 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12943 5700..5777 + |
| 1622929769.430301-CDS-H-elongata_contig12943:6487..7237 | 1622929769.430301-CDS-H-elongata_contig12943:6487..7237 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12943 6488..7237 + |
| 1691679150.786461-CDS-H-elongata_contig12943:6487..7237 | 1691679150.786461-CDS-H-elongata_contig12943:6487..7237 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12943 6488..7237 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12943.2154.1 >prot_H-elongata_contig12943.2154.1 ID=prot_H-elongata_contig12943.2154.1|Name=mRNA_H-elongata_contig12943.2154.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=345bp
MARDNGVIPGESETTDSLVEQYRRHRSEIAKIPTYTDSILKMLKDIRKTV RASTRLQPGSTAFAQFLDEWWSSVVKFLQHSSIVVAEKNAREVMETLKSL KVKQEENKKREINRLLCKLDENADFGPPARRLSELFTPPRLHQATDGSPL LEAFDEGASDSSPEPRLRDALAPRENRHHHRYQPPQPQQQQLEFPSCAGA SANTSPPRLGHASAAASAAAAAAAAAAVATATAASRAKSGRSWQQHQLGV GIDDGGISEGLERRTAATSSASVCTTMTTSRTNAAFSTRVETGSDSVALV VTAAAADSAPLAAATATAGGLSLVPRSLPPALALRPRGSFVSLGG back to topmRNA from alignment at H-elongata_contig12943:3735..7237+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig12943.2154.1 ID=mRNA_H-elongata_contig12943.2154.1|Name=mRNA_H-elongata_contig12943.2154.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3503bp|location=Sequence derived from alignment at H-elongata_contig12943:3735..7237+ (Himanthalia elongata Himel1 dioecious) AGAACATCATGGCCAGGGACAATGGGGTCATCCCTGGGGAAAGTGAGACC
ACGGACAGCCTCGTGGAGCAGTACCGCAGGCAAGCAAAGGACAAGGAAGA
AGAAGGCAGCAGCTGCAGGCAGTCATATAACTGCATAGTTTTTTGCTTTG
CTTTGTTGTTTTGTTTTTGCTTTTTGTTTTCTCTCTTTGTGTGTGTGTGT
TTTGTGTATTTATGAAATAGCACATAACCGCTAAGGCAATCCGGCCCTAT
CGTGCTAGTCATTCTAGGCTACTCTCGCAGTGGTAGTCATTATAGGACCT
CCCAATGGGGGATAGTATGTCGACTGGCTAGCAGCAGCACGTTGGCCGGG
TCGATAGTAATACATGTTATGGTCAGGTCGTTGGGTCTCTTGTTGCTTGT
GTTGTGTATATAGTATTGATTGATGTTAGATGTTAGATGTCTCCATTAGA
TGTCGCTCTGATTGATTGATTGATTATGTTTGGGGCGCTTTGTGACGGCG
GTCATAACACGCCTGCTGTGCCTGATTTGGTATCTCGTGAGGATTTGAAA
TGCAGGCCATTATCTCATCCCCTGGTCCGTATGCCGCCGCACGGTGGTGG
AACTCGTGATTCCTTCACACAGTTGACGTCATGACTTGACGTCTTGGCTG
GCTAGTATCTCAACTGGGTCTGTAGTATTGAGTAATAGTATTGTAGTGTT
AAATAAACACCAGTACTGTCTAGGGCGGGTATTAACGGGGTTACAAAAAA
TTATATTCCATCCGATTTAAATATAAATCGGGCTCTAATTGGTCGAAATT
TAAATAAAGCCTAGCCTTCGACCAATCAGAGCCCGATTTAAATTTAAATC
GGCTGGAATTTAAATTTTTTTAACCCCGTTAATACCCGCCCTAACACCCT
TCAATTATACTACTATTGTTAATATCTCGACGGAAATGGTACGGTATATG
ATACGGTACGGAACATGGTACGGTACGGTATATGACTTACTAAAAGGCTC
TATTACTACTGTATAAAATGGTGGTACTCTTGGGACCCGTTGGAGCGGTA
GGCTATGCTAGAGAACAAACGCGATCACTATTTGATTAATAATAAGAGTA
TAACGTTTCTAGTCTAGAGTGTTTCTTGTCTTATCTTGTCTTGTTTACTG
TCTTGTCTTGTCTTTGTAGGCACAGGAGTGAGATCGCCAAGATTCCCACC
TATACTGACAGTATATTGAAGATGCTCAAGGACATCCGTAAGACGGTACG
GGCGTCGACGAGGCTGCAGCCCGGGTCGACGGCCTTCGCTCAATTTCTTG
ACGAGGTACGGCGCTCGTTACATGAGACGCACCCACGCGAAACACGCCTC
CTACGTTCGTGGGGGGGGTGCCGTTCGTTCTCTTTTGTTTTTGTTTCGGT
GTGCTAGAGCAGCGTTGATTGGTTGATTTCACTTCGCTGGGGATAGATAC
AGGTACACCATGAATCAGGACGACGTGGACCACGCTGCTGTCATCGCACC
ATCTGTGTCGGGTTTCGTAGAGAGAAATCCCAGGAAGTTTTCTTCCTCGT
ACGGACACGGCGCGTTGTGCGGGGCAGCCCTGATTGCTGACTTTTCGACG
CCTCGATTTATCTATGTGTTACTTATTTTAAGTATCTATTTATGTATTCA
TTTATTTATTTATTTATTTTATCAACTATATTATTTTTGTTTATTTTTAT
TTAAATATTTATTTGACTATATGTTTATAAATCAATTTGTTTATTTATCT
ATTTTTGTGCGTGCAGCTTAAGCCCTCTCGTGAAATTATCATTCGTCGCG
ACTCCGACCTAGAACTGGCTTAACTCTCGAATTTTTCTTGTCGCCCTTGA
CTTTTACCCTCCACTCTCTTCCCCGATGTCATTTGATGCCCCGCCGTTTG
TTGGTTTTCCATGGGACGGCGTTTTTTACCTCCCCATTCTGCCTCTGGAA
CAACGAAACAATCAGTGGTGGTCCTCAGTGGTGAAATTCCTTCAGCACTC
GTCTATTGTTGTTGCCGAGAAGAACGCCCGGGAGGTCATGGAGGTATGAT
ACAGTGCAGAACTTTCCTATATTTTCATTTATTTTCGCGCGTTTTGCTTT
GTAAACGCCTTCGGTGGAGTTCCAGCAGAAAGCGGATCGAATCCGTTAAG
GGTCTTGCCAGGACATGTAAAAAGCAGCGCACAAGAGATAAGCAAACGCC
TTTACGAATGATGTTGTGCGTCGCAGCAGATCTCAAGATAGTACCGGTCG
TTGTTGGAGGAATTTGTTGAATAGTGCCGGTCGTTGTGATAAGGATGGGA
GGAGGGGTGAAGGAATATACTGACCTGGGAAGGCGAAAAGAGATAGGGAT
AATGATGCAGAAAGGATAGAAAGAAGAAGAAAAAAAGAGCGCCGCCTTTG
GCAAAATAGGAACGATTGGCCATCGATCGTGTAGGAACGGTGCTCCGACT
TCCTGAGAGCCAAAAGCTAACGGTTAGTGGTTACTGGTTAACGGTCTAAC
AGCTAAGCTATCCAAAAATTGAGTATTCTCCCCCCTTCCTCCCATCTCGC
TCTTTGCTAATTCCAGCGAGCGCGTCTGTCCTCCCTGCACAATGACACGG
CCGCTTTATGCAAAGTTGCCTTCGCTGTCTGTCTTGTGGTGCTTGTTTGA
ACAACTTTCGGTGGGTGCTCGTTTGGTCCCGGACGCTCCGACAACACGGT
CGGTCGGTTGGTCGGTTTTCGATGGGGGCACTAAAACAACATAAACCGAG
AAGACTCTCAAGAGCCTCAAGGTCAAACAGGAAGAAAACAAGAAGCGGGA
GATCAACCGTCTCCTGTGCAAGCTCGACGAGAATGCCGACTTCGGCCCCC
CCGCTAGGCGCCTATCCGAGCTCTTCACGCCGCCCCGCCTCCACCAAGCG
ACCGACGGCAGCCCTCTGCTCGAAGCGTTCGATGAGGGCGCAAGCGACTC
GTCTCCGGAACCGCGCCTGCGCGACGCCCTCGCCCCTCGAGAAAACCGAC
ACCACCACCGCTACCAGCCGCCGCAGCCGCAACAGCAACAGCTGGAGTTT
CCGTCCTGCGCTGGGGCTTCCGCCAACACCTCGCCCCCCCGCCTTGGGCA
CGCCTCCGCCGCTGCCAGTGCCGCCGCTGCTGCCGCTGCCGCCGCTGCAG
TGGCTACCGCGACCGCCGCCAGCAGGGCAAAGAGTGGCCGCAGCTGGCAA
CAGCACCAGCTAGGCGTGGGTATCGACGACGGCGGGATCTCGGAGGGCTT
GGAGCGCAGGACTGCTGCTACCTCTTCCGCTTCAGTTTGCACGACTATGA
CTACATCAAGAACAAATGCAGCGTTTTCGACCAGGGTGGAAACTGGTTCC
GACTCCGTTGCTCTTGTCGTGACTGCTGCTGCTGCTGACTCTGCTCCTCT
TGCTGCTGCTACTGCTACTGCGGGGGGGTTGTCCTTGGTGCCCCGATCCC
TTCCCCCTGCGCTCGCGCTGAGGCCGCGGGGGTCCTTTGTGTCTCTCGGA
GGG back to topCoding sequence (CDS) from alignment at H-elongata_contig12943:3735..7237+ >mRNA_H-elongata_contig12943.2154.1 ID=mRNA_H-elongata_contig12943.2154.1|Name=mRNA_H-elongata_contig12943.2154.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2070bp|location=Sequence derived from alignment at H-elongata_contig12943:3735..7237+ (Himanthalia elongata Himel1 dioecious) ATGGCCAGGGACAATGGGGTCATCCCTGGGGAAAGTGAGACCACGGACAG CCTCGTGGAGCAGTACCGCAGATGGCCAGGGACAATGGGGTCATCCCTGG GGAAAGTGAGACCACGGACAGCCTCGTGGAGCAGTACCGCAGGCACAGGA GTGAGATCGCCAAGATTCCCACCTATACTGACAGTATATTGAAGATGCTC AAGGACATCCGTAAGACGGTACGGGCGTCGACGAGGCTGCAGCCCGGGTC GACGGCCTTCGCTCAATTTCTTGACGAGGCACAGGAGTGAGATCGCCAAG ATTCCCACCTATACTGACAGTATATTGAAGATGCTCAAGGACATCCGTAA GACGGTACGGGCGTCGACGAGGCTGCAGCCCGGGTCGACGGCCTTCGCTC AATTTCTTGACGAGTGGTGGTCCTCAGTGGTGAAATTCCTTCAGCACTCG TCTATTGTTGTTGCCGAGAAGAACGCCCGGGAGGTCATGGAGTGGTGGTC CTCAGTGGTGAAATTCCTTCAGCACTCGTCTATTGTTGTTGCCGAGAAGA ACGCCCGGGAGGTCATGGAGACTCTCAAGAGCCTCAAGGTCAAACAGGAA GAAAACAAGAAGCGGGAGATCAACCGTCTCCTGTGCAAGCTCGACGAGAA TGCCGACTTCGGCCCCCCCGCTAGGCGCCTATCCGAGCTCTTCACGCCGC CCCGCCTCCACCAAGCGACCGACGGCAGCCCTCTGCTCGAAGCGTTCGAT GAGGGCGCAAGCGACTCGTCTCCGGAACCGCGCCTGCGCGACGCCCTCGC CCCTCGAGAAAACCGACACCACCACCGCTACCAGCCGCCGCAGCCGCAAC AGCAACAGCTGGAGTTTCCGTCCTGCGCTGGGGCTTCCGCCAACACCTCG CCCCCCCGCCTTGGGCACGCCTCCGCCGCTGCCAGTGCCGCCGCTGCTGC CGCTGCCGCCGCTGCAGTGGCTACCGCGACCGCCGCCAGCAGGGCAAAGA GTGGCCGCAGCTGGCAACAGCACCAGCTAGGCGTGGGTATCGACGACGGC GGGATCTCGGAGGGCTTGGAGCGCAGGACTGCTGCTACCTCTTCCGCTTC AGTTTGCACGACTATGACTACATCAAGAACAAATGCAGCGTTTTCGACCA GGGTGGAAACTGGTTCCGACTCCGTTGCTCTTGTCGTGACTGCTGCTGCT GCTGACTCTGCTCCTCTTGCTGCTGCTACTGCTACTGCGGGGGGGTTGTC CTTGGTGCCCCGATCCCTTCCCCCTGCGCTCGCGCTGAGGCCGCGGGGGT CCTTTGTGTCTCTCGGAGGGACTCTCAAGAGCCTCAAGGTCAAACAGGAA GAAAACAAGAAGCGGGAGATCAACCGTCTCCTGTGCAAGCTCGACGAGAA TGCCGACTTCGGCCCCCCCGCTAGGCGCCTATCCGAGCTCTTCACGCCGC CCCGCCTCCACCAAGCGACCGACGGCAGCCCTCTGCTCGAAGCGTTCGAT GAGGGCGCAAGCGACTCGTCTCCGGAACCGCGCCTGCGCGACGCCCTCGC CCCTCGAGAAAACCGACACCACCACCGCTACCAGCCGCCGCAGCCGCAAC AGCAACAGCTGGAGTTTCCGTCCTGCGCTGGGGCTTCCGCCAACACCTCG CCCCCCCGCCTTGGGCACGCCTCCGCCGCTGCCAGTGCCGCCGCTGCTGC CGCTGCCGCCGCTGCAGTGGCTACCGCGACCGCCGCCAGCAGGGCAAAGA GTGGCCGCAGCTGGCAACAGCACCAGCTAGGCGTGGGTATCGACGACGGC GGGATCTCGGAGGGCTTGGAGCGCAGGACTGCTGCTACCTCTTCCGCTTC AGTTTGCACGACTATGACTACATCAAGAACAAATGCAGCGTTTTCGACCA GGGTGGAAACTGGTTCCGACTCCGTTGCTCTTGTCGTGACTGCTGCTGCT GCTGACTCTGCTCCTCTTGCTGCTGCTACTGCTACTGCGGGGGGGTTGTC CTTGGTGCCCCGATCCCTTCCCCCTGCGCTCGCGCTGAGGCCGCGGGGGT CCTTTGTGTCTCTCGGAGGG back to top
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