prot_H-elongata_contig129407.2153.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig129407.2153.1
Unique Nameprot_H-elongata_contig129407.2153.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length100
Homology
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BLAST of mRNA_H-elongata_contig129407.2153.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.460e-19
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 0 
Query:    1 MSAVFASKRSDATTIIGDSGASRHTFCDGTHVRNKRSPGPGEAYLVIGDGTQIPVKCYGDLDMVLRCEKDGKPWSNVEVTLKNIAVVPNLWFDLISFNQI 100
            +S++F  +R  +T  IGDS ++ H   DGTHV N R P   E +L IGDG ++  +C+G LD+V  C +D      V VT+K+IAVVP+L FDL+S N I
Sbjct:    2 LSSIFPRRRPGSTVWIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCRED------VLVTMKDIAVVPDLAFDLVSLNVI 95
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BLAST of mRNA_H-elongata_contig129407.2153.1 vs. uniprot
Match: A0A6H5LQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQP2_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 7.270e-10
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 0 
Query:    9 RSDATTIIGDSGASRHTFCDGTHVRNKRSPGPGEAYLVIGDGTQIPVKCYGDLDMVLRCEKDGKPWSNVEVTLKNIAVVPNLWF-----------DLISFNQI 100
            R  AT  +G + A  H       V N+R P P E  L++ DG ++PVK +GDLD+V  C++D      V VTL  ++VVP L             DL+SF++I
Sbjct:    8 RPGATVFLGHTSAKIHVARSEDKVDNRRLPRPQEQLLMLSDGRRVPVKLFGDLDVVFHCQRD------VCVTLTGVSVVPGLVLMGVGALPGLALDLLSFSRI 104
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129407.2153.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE6.460e-1946.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LQP2_9PHAE7.270e-1036.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129407contigH-elongata_contig129407:292..591 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129407.2153.1mRNA_H-elongata_contig129407.2153.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig129407 292..597 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig129407.2153.1 ID=prot_H-elongata_contig129407.2153.1|Name=mRNA_H-elongata_contig129407.2153.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MSAVFASKRSDATTIIGDSGASRHTFCDGTHVRNKRSPGPGEAYLVIGDG
TQIPVKCYGDLDMVLRCEKDGKPWSNVEVTLKNIAVVPNLWFDLISFNQI
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