prot_H-elongata_contig12938.2151.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12938.2151.1
Unique Nameprot_H-elongata_contig12938.2151.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length160
Homology
BLAST of mRNA_H-elongata_contig12938.2151.1 vs. uniprot
Match: A0A6H5K638_9PHAE (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K638_9PHAE)

HSP 1 Score: 273 bits (697), Expect = 2.950e-82
Identity = 137/151 (90.73%), Postives = 144/151 (95.36%), Query Frame = 0
Query:    1 MFIKEVVIDGFKSYATRTVLQGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRVANLQELVYKQGQAGVTKASVTLVFNNVDKKSSPMGYDDFDEVTITRQVVIGGKNKYLINGRTVQQSQVVNFFHSVQLNVNNPHFLIMQARSS 151
            M I+EVVIDGFKSYATRTVLQGFD  FNAITGLNGSGKSNILD+ICFVLGISNLSQVRV+NLQELVYKQGQAGVTKASVTLVF+NVDKK SPMGY++FDEVTITRQVVIGGKNKYLINGR+VQQSQV N FHSVQLNVNNPHFLIMQAR S
Sbjct:    1 MHIREVVIDGFKSYATRTVLQGFDQQFNAITGLNGSGKSNILDAICFVLGISNLSQVRVSNLQELVYKQGQAGVTKASVTLVFSNVDKKGSPMGYEEFDEVTITRQVVIGGKNKYLINGRSVQQSQVTNLFHSVQLNVNNPHFLIMQARLS 151          
BLAST of mRNA_H-elongata_contig12938.2151.1 vs. uniprot
Match: D7FGT8_ECTSI (SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT8_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 3.710e-82
Identity = 136/154 (88.31%), Postives = 145/154 (94.16%), Query Frame = 0
Query:    1 MFIKEVVIDGFKSYATRTVLQGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRVANLQELVYKQGQAGVTKASVTLVFNNVDKKSSPMGYDDFDEVTITRQVVIGGKNKYLINGRTVQQSQVVNFFHSVQLNVNNPHFLIMQARSSNII 154
            M I+EVVIDGFKSYATRTVLQGFD  FNAITGLNGSGKSNILD+ICFVLGISNLSQVRV+NLQELVYKQGQAGVTKASVTLVF+NVDKK SPMGY++FDEVTITRQVVIGGKNKYLINGRTVQQSQV N FHSVQLNVNNPHFLIMQ R + ++
Sbjct:    1 MHIREVVIDGFKSYATRTVLQGFDQQFNAITGLNGSGKSNILDAICFVLGISNLSQVRVSNLQELVYKQGQAGVTKASVTLVFSNVDKKGSPMGYEEFDEVTITRQVVIGGKNKYLINGRTVQQSQVTNLFHSVQLNVNNPHFLIMQGRITKVL 154          
BLAST of mRNA_H-elongata_contig12938.2151.1 vs. uniprot
Match: A0A836CJQ0_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ0_9STRA)

HSP 1 Score: 268 bits (685), Expect = 1.380e-80
Identity = 131/154 (85.06%), Postives = 141/154 (91.56%), Query Frame = 0
Query:    1 MFIKEVVIDGFKSYATRTVLQGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRVANLQELVYKQGQAGVTKASVTLVFNNVDKKSSPMGYDDFDEVTITRQVVIGGKNKYLINGRTVQQSQVVNFFHSVQLNVNNPHFLIMQARSSNII 154
            MFI+E++IDGFKSYATRTVL GFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRV NLQELVYKQGQAGVTKASVTLVFNN DKK SP+GY+ FD++TITRQVVIGGKNKYLING T Q SQV N FHSVQLNVNNPHFLIMQ R + ++
Sbjct:    1 MFIEELIIDGFKSYATRTVLSGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRVGNLQELVYKQGQAGVTKASVTLVFNNEDKKGSPVGYEHFDQITITRQVVIGGKNKYLINGHTAQASQVQNLFHSVQLNVNNPHFLIMQGRITKVL 154          
BLAST of mRNA_H-elongata_contig12938.2151.1 vs. uniprot
Match: A0A7S3MD26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MD26_9STRA)

HSP 1 Score: 239 bits (610), Expect = 8.930e-79
Identity = 113/149 (75.84%), Postives = 132/149 (88.59%), Query Frame = 0
Query:    6 VVIDGFKSYATRTVLQGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRVANLQELVYKQGQAGVTKASVTLVFNNVDKKSSPMGYDDFDEVTITRQVVIGGKNKYLINGRTVQQSQVVNFFHSVQLNVNNPHFLIMQARSSNII 154
            ++IDGFKSYA +TV+ GFDP FNAITGLNG+GKSNILDSICFVLGISNL+QVRV NLQELVYKQGQAGVTKA+V++VFNN D  SSP+GY+   ++T+TRQV IGGKNKY+ING TVQQ+QV N FHSVQLNVNNPHFLIMQ R + ++
Sbjct:    1 IIIDGFKSYAQKTVVSGFDPQFNAITGLNGTGKSNILDSICFVLGISNLTQVRVGNLQELVYKQGQAGVTKATVSVVFNNADTASSPVGYESHKQITVTRQVAIGGKNKYMINGSTVQQNQVQNMFHSVQLNVNNPHFLIMQGRITKVL 149          
BLAST of mRNA_H-elongata_contig12938.2151.1 vs. uniprot
Match: M4BZ72_HYAAE (SMC_N domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZ72_HYAAE)

HSP 1 Score: 245 bits (626), Expect = 3.700e-77
Identity = 115/154 (74.68%), Postives = 137/154 (88.96%), Query Frame = 0
Query:    1 MFIKEVVIDGFKSYATRTVLQGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRVANLQELVYKQGQAGVTKASVTLVFNNVDKKSSPMGYDDFDEVTITRQVVIGGKNKYLINGRTVQQSQVVNFFHSVQLNVNNPHFLIMQARSSNII 154
            M I+E+++DGFKSYATRTV+ GFDP FNAITGLNGSGKSN+LD+ICFVLGI+NLSQVR  NLQELVYKQGQAGVTKASVT+VFNN D K+SP+GY+ ++++++ RQVVIGG+NKYLING T Q SQV N FHSVQLNVNNPHFLIMQ R + ++
Sbjct:    1 MHIEEIILDGFKSYATRTVISGFDPRFNAITGLNGSGKSNVLDAICFVLGITNLSQVRANNLQELVYKQGQAGVTKASVTIVFNNQDAKASPVGYEQYEQMSVARQVVIGGRNKYLINGHTAQVSQVQNLFHSVQLNVNNPHFLIMQGRITKVL 154          
BLAST of mRNA_H-elongata_contig12938.2151.1 vs. uniprot
Match: A0A6N2KQT2_SALVM (SMC_N domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2KQT2_SALVM)

HSP 1 Score: 243 bits (619), Expect = 5.270e-77
Identity = 111/154 (72.08%), Postives = 137/154 (88.96%), Query Frame = 0
Query:    1 MFIKEVVIDGFKSYATRTVLQGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRVANLQELVYKQGQAGVTKASVTLVFNNVDKKSSPMGYDDFDEVTITRQVVIGGKNKYLINGRTVQQSQVVNFFHSVQLNVNNPHFLIMQARSSNII 154
            M++KE+ ++GFKSYATRTV+QGFDP FNAITGLNGSGKSNILDSICFVLGI+NL QVR +NLQELVYKQGQAG+TKA+V++VF+N D+  SP+GY++  E+T+TRQ+V+GG+NKYLING+  Q SQV N FHSVQLNVNNPHFLIMQ R + ++
Sbjct:    1 MYVKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSDRSRSPLGYENHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVL 154          
BLAST of mRNA_H-elongata_contig12938.2151.1 vs. uniprot
Match: A0A5J5AUC4_9ASTE (SMC_N domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5AUC4_9ASTE)

HSP 1 Score: 236 bits (602), Expect = 7.080e-77
Identity = 110/154 (71.43%), Postives = 135/154 (87.66%), Query Frame = 0
Query:    1 MFIKEVVIDGFKSYATRTVLQGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRVANLQELVYKQGQAGVTKASVTLVFNNVDKKSSPMGYDDFDEVTITRQVVIGGKNKYLINGRTVQQSQVVNFFHSVQLNVNNPHFLIMQARSSNII 154
            M+IKE+ ++GFKSYATRTV+QGFDP FNAITGLNGSGKSNILDSICFVLGI+NL QVR +NLQELVYKQGQAG+TKA+V++VF+N D+  SP+G ++  E+T+TRQ+V+GG+NKYLING   Q S+V N FHSVQLNVNNPHFLIMQ R + ++
Sbjct:    1 MYIKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSVVFDNSDRSRSPLGCENCPEITVTRQIVVGGRNKYLINGHLAQPSRVQNLFHSVQLNVNNPHFLIMQGRITKVL 154          
BLAST of mRNA_H-elongata_contig12938.2151.1 vs. uniprot
Match: A0A1J3K720_NOCCA (Structural maintenance of chromosomes protein 2-1 (Fragment) n=4 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3K720_NOCCA)

HSP 1 Score: 241 bits (614), Expect = 4.090e-76
Identity = 111/154 (72.08%), Postives = 135/154 (87.66%), Query Frame = 0
Query:    1 MFIKEVVIDGFKSYATRTVLQGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRVANLQELVYKQGQAGVTKASVTLVFNNVDKKSSPMGYDDFDEVTITRQVVIGGKNKYLINGRTVQQSQVVNFFHSVQLNVNNPHFLIMQARSSNII 154
            M IK++ ++GFKSYATRTV+ GFDPHFNAITGLNGSGKSNILDSICFVLGI+NL QVR ANLQELVYKQGQAG+TKA+V++ F+N ++  SP+GY+D  E+T+TRQ+V+GG+NKYLING+  Q SQV N FHSVQLNVNNPHFLIMQ R + ++
Sbjct:    1 MHIKDICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAANLQELVYKQGQAGITKATVSVTFDNSERNKSPLGYEDNSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVL 154          
BLAST of mRNA_H-elongata_contig12938.2151.1 vs. uniprot
Match: A0A565CW20_9BRAS (SMC_N domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CW20_9BRAS)

HSP 1 Score: 240 bits (613), Expect = 5.630e-76
Identity = 111/154 (72.08%), Postives = 135/154 (87.66%), Query Frame = 0
Query:    1 MFIKEVVIDGFKSYATRTVLQGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRVANLQELVYKQGQAGVTKASVTLVFNNVDKKSSPMGYDDFDEVTITRQVVIGGKNKYLINGRTVQQSQVVNFFHSVQLNVNNPHFLIMQARSSNII 154
            M IKE+ ++GFKSYATRTV+ GFDPHFNAITGLNGSGKSNILDSICFVLGI+NL QVR ANLQELVYKQGQAG+TKA+V++ F+N ++  SP+GY++  E+T+TRQ+V+GG+NKYLING+  Q SQV N FHSVQLNVNNPHFLIMQ R + ++
Sbjct:    1 MHIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAANLQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEEHPEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVL 154          
BLAST of mRNA_H-elongata_contig12938.2151.1 vs. uniprot
Match: W7TGS9_9STRA (Structural maintenance of chromosomes protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGS9_9STRA)

HSP 1 Score: 254 bits (648), Expect = 1.830e-75
Identity = 123/154 (79.87%), Postives = 137/154 (88.96%), Query Frame = 0
Query:    1 MFIKEVVIDGFKSYATRTVLQGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRVANLQELVYKQGQAGVTKASVTLVFNNVDKKSSPMGYDDFDEVTITRQVVIGGKNKYLINGRTVQQSQVVNFFHSVQLNVNNPHFLIMQARSSNII 154
            M+I+EV+IDGFKSYATRTV+ GFDP FNAITGLNGSGKSNILDSICFVLGISNLS VRV NLQELVYKQGQAGVTKA+ T+ FNN DKKSSP+GY+ FD +++TRQVVIGGKNKYLING  VQ SQV N FHSVQLNVNNPHFLIMQ R + ++
Sbjct:    1 MYIEEVIIDGFKSYATRTVVSGFDPCFNAITGLNGSGKSNILDSICFVLGISNLSHVRVGNLQELVYKQGQAGVTKATATINFNNADKKSSPVGYEHFDRISVTRQVVIGGKNKYLINGHAVQASQVQNLFHSVQLNVNNPHFLIMQGRITKVL 154          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12938.2151.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K638_9PHAE2.950e-8290.73Structural maintenance of chromosomes protein n=1 ... [more]
D7FGT8_ECTSI3.710e-8288.31SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) n=1... [more]
A0A836CJQ0_9STRA1.380e-8085.06Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S3MD26_9STRA8.930e-7975.84Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
M4BZ72_HYAAE3.700e-7774.68SMC_N domain-containing protein n=1 Tax=Hyaloperon... [more]
A0A6N2KQT2_SALVM5.270e-7772.08SMC_N domain-containing protein n=1 Tax=Salix vimi... [more]
A0A5J5AUC4_9ASTE7.080e-7771.43SMC_N domain-containing protein n=1 Tax=Nyssa sine... [more]
A0A1J3K720_NOCCA4.090e-7672.08Structural maintenance of chromosomes protein 2-1 ... [more]
A0A565CW20_9BRAS5.630e-7672.08SMC_N domain-containing protein n=1 Tax=Arabis nem... [more]
W7TGS9_9STRA1.830e-7579.87Structural maintenance of chromosomes protein n=2 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..157
e-value: 2.0E-37
score: 131.2
NoneNo IPR availablePANTHERPTHR43977:SF2coord: 1..154
NoneNo IPR availablePANTHERPTHR43977FAMILY NOT NAMEDcoord: 1..154
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 2..138
e-value: 1.7E-38
score: 132.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12938contigH-elongata_contig12938:989..2012 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12938.2151.1mRNA_H-elongata_contig12938.2151.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12938 989..2012 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12938.2151.1 ID=prot_H-elongata_contig12938.2151.1|Name=mRNA_H-elongata_contig12938.2151.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
MFIKEVVIDGFKSYATRTVLQGFDPHFNAITGLNGSGKSNILDSICFVLG
ISNLSQVRVANLQELVYKQGQAGVTKASVTLVFNNVDKKSSPMGYDDFDE
VTITRQVVIGGKNKYLINGRTVQQSQVVNFFHSVQLNVNNPHFLIMQARS
SNIIIIMEN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003395RecF/RecN/SMC_N
IPR027417P-loop_NTPase