mRNA_H-elongata_contig129240.2146.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: D8LEB1_ECTSI (Utp13 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB1_ECTSI) HSP 1 Score: 316 bits (809), Expect = 1.400e-96 Identity = 170/256 (66.41%), Postives = 190/256 (74.22%), Query Frame = 1
Query: 1 LSTTRQIVGYNDEVIDMKSLPSGTRGKGESWIAVATNSPQVRLFELGGFSCRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVVSGAADRTLQRWDVPCRALVVKE-AKRSSSEDRSAVAGDVGDSGLGVAVGDGRA-------APLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKGHR 744
L RQIVGYNDEVID+KS PSG GESW+AVATNSPQVRLFEL FSCRLLDGHTDTVLALDVAP+GRHLCTSSKDRTCLLW++D G PVVR SGH+D+VGA+AASRKPGPW+S+S + + AFVVSGAADRTLQRWDVPCR L E A R S E + VA APL+ETA RSVRAHE+DINCVAVSPNDAVVASASQDRT+KLW++ DLE GV+KGH+
Sbjct: 392 LVARRQIVGYNDEVIDVKSFPSGGESDGESWVAVATNSPQVRLFELSSFSCRLLDGHTDTVLALDVAPDGRHLCTSSKDRTCLLWNVDLGVPVVRWSGHADSVGAVAASRKPGPWNSSS--------TSAAGGAAAFVVSGAADRTLQRWDVPCRPLAALEGAARDSREAAAEVAXXXXXXXXXXXXXXXXXTGVWTPPAPLLETARRSVRAHEQDINCVAVSPNDAVVASASQDRTIKLWKAADLELTGVLKGHK 639
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: A0A7S0PX60_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PX60_9STRA) HSP 1 Score: 193 bits (490), Expect = 6.350e-54 Identity = 110/256 (42.97%), Postives = 153/256 (59.77%), Query Frame = 1
Query: 1 LSTTRQIVGYNDEVIDMKSLPSGTR----GKGESWIAVATNSPQVRLFELGGFSCRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVVSGAADRTLQRWDVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKGHRRGVW 756
L+ R IVG+NDE++D+K +PS ++ I VATNS QVRLFELG +SC +LDGH+ TVL +D +P GR+L T KD+T LW +++ + +GH++A+GA A SRK G + G ++ G+F V+ + DRTL+RW++P S D+ A++ D PL A S RAHEKDIN ++V+PND++VA+ SQD+TVKLWRS DL G +KGHRRGVW
Sbjct: 33 LAADRTIVGHNDEILDLKVIPSSSQQTNTAPSSERIVVATNSAQVRLFELGTYSCEVLDGHSATVLCVDASPCGRYLATCGKDKTMRLWHLETQRCIGVATGHTEAIGAAALSRKVGRYDVK--------GKAAINGGGSFAVTASKDRTLKRWNLP----------GSDDLDKCALSED----------------PLELRAFVSARAHEKDINIISVAPNDSLVATGSQDKTVKLWRSTDLTLQGTLKGHRRGVW 254
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: A0A836CIZ1_9STRA (Utp13 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ1_9STRA) HSP 1 Score: 192 bits (488), Expect = 3.130e-52 Identity = 115/248 (46.37%), Postives = 157/248 (63.31%), Query Frame = 1
Query: 1 LSTTRQIVGYNDEVIDMKSLPSGTRGKGESWIAVATNSPQVRLFELGGFSCRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGY---------PVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVVSGAADRTLQRWDVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPL-VETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDL 714
L T + IVGYNDE+ID+KS+PS + E IAVATNSPQ+R+F++ FS LLDGH D VLALDV+P+G++L + SKD+ ++W + +G P++ + GH+DAVGA+ SRK GP+S+ SG AFV++G++D+TL+R+++ L + SSS D GDG AA L V+ A SV AHEKDIN VAV+PNDA+VA+ASQD+T KLWR+ DL
Sbjct: 413 LRTAKLIVGYNDEIIDIKSIPSPGQESCERRIAVATNSPQIRIFDVDTFSATLLDGHADVVLALDVSPDGKYLSSVSKDQAGMVWPLSAGMLEGTAAPPGPLLVLRGHTDAVGAVCMSRKVGPYSAKSG---------------AFVITGSSDKTLKRYELD--GLELARLSISSSSD-----------------GDGGAAELPVKRARHSVVAHEKDINAVAVAPNDAMVATASQDKTAKLWRATDL 626
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: A0A7S4SA35_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SA35_9STRA) HSP 1 Score: 189 bits (479), Expect = 4.520e-51 Identity = 111/269 (41.26%), Postives = 156/269 (57.99%), Query Frame = 1
Query: 1 LSTTRQIVGYNDEVIDMKSLP----------SGTRGKGESW------IAVATNSPQVRLFELGGFSCRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSG-AFVVSGAADRTLQRWDVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKGHRRGVW 756
L R I+G+NDE++D++ LP S + ES IAVATNS QVRLFE+G +SC +LDGHTDTVLALDV+P GR+L T KD+T LW + + V +GH++A+GA + SRK + + G ++ K+ G AF+V+ + DRT++RW P + K A+ + + PL + S RAHEKDIN V+++PND+++A+ SQD+TVKLWRSKDL +KGH+RGVW
Sbjct: 512 LDVDRTIIGHNDEILDLRILPTPIARDSNNESIDTNQDESVACRPQKIAVATNSAQVRLFEVGSYSCEVLDGHTDTVLALDVSPCGRYLATCGKDKTMRLWHLGTNQCVAVATGHTEAIGATSLSRKVVRY---------EVGGKAAKNGGGAFIVTASKDRTMKRWSFPGSIELNKHAETELASGKE---------------------PLALSVIGSARAHEKDINIVSIAPNDSLIATGSQDKTVKLWRSKDLTLQVTLKGHKRGVW 750
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: A0A7S2W0N0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W0N0_9STRA) HSP 1 Score: 182 bits (463), Expect = 6.390e-49 Identity = 112/272 (41.18%), Postives = 154/272 (56.62%), Query Frame = 1
Query: 1 LSTTRQIVGYNDEVIDMKSLP----SGTRGKGESW---------------IAVATNSPQVRLFELGGFSCRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKS-SGAFVVSGAADRTLQRWDVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKGHRRGVW 756
L+ R IVG+NDE++D+K +P S T + + IAVATNS QVR+F LG FSC +L GHT VL LDV+P GR+LCT+ KD+T LWDI +G + GH++A+GA A SRK G + D +S K+ +GAF V+ + DRT++RW++P + + K + D G V L + S RAHEKDIN V+V+PND++VA+ SQD+TVKLW S D G + GH+RG+W
Sbjct: 507 LALERTIVGHNDEILDIKVVPNISISTTNSEDDETKKQSIVEDDTMQPKKIAVATNSAQVRIFTLGTFSCSILSGHTKIVLCLDVSPCGRYLCTAGKDKTMRLWDISTGTCIGMAEGHTEAIGATALSRKLGRY---------DVAGKSAKNGAGAFAVTASKDRTIKRWNLPGASALKK----------------INDEGETV---------LELSTFVSARAHEKDINIVSVAPNDSLVATGSQDKTVKLWNSVDFTLKGTLSGHKRGIW 744
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: A0A4D9D3B5_9STRA (Utp13 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3B5_9STRA) HSP 1 Score: 180 bits (457), Expect = 4.210e-48 Identity = 117/274 (42.70%), Postives = 156/274 (56.93%), Query Frame = 1
Query: 1 LSTTRQIVGYNDEVIDMKSLPSGTRGKGESWIAVATNSPQVRLFELGGFSCR-LLDG-HTDTVLALDVAPNGRHLCTSSKDRTCLLWDID-------------------SGYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVV-SGAADRTLQRWDVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKGHRRGVW 756
L+ +R +VGYND+VI +K LP G+ + VA+NSPQVR+F L SC LL+G HT+TVLA+DV+P+GR + T SKDR+ LW + +G + R GH+DAV A+A RK + + S K G V S ADRTL+RW + L K A+ + A G V + G G + P A+ SV AH+KDIN +AVSPNDA+VASASQD+TVKLW ++DL +GV+KGH+RGVW
Sbjct: 459 LAPSRVVVGYNDQVIAVKYLPGLGGGRDGRRVVVASNSPQVRVFRLDDLSCECLLEGQHTETVLAVDVSPDGRWVVTGSKDRSVCLWQLGPAAGAESLEEGQDGDSECVAGSCIRRYEGHTDAVSAVALGRKKAAYQL----------LASGKPGGTAVAYSAGADRTLKRWLLA--PLTPKPARHRDLRQKEAN-GKVEEHGQGKGSAGAPSVPSTTEASASVLAHDKDINALAVSPNDALVASASQDKTVKLWEARDLRAVGVLKGHKRGVW 719
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: A0A1Z5J9L8_FISSO (U3 small nucleolar RNA-associated protein 13 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J9L8_FISSO) HSP 1 Score: 176 bits (447), Expect = 8.370e-47 Identity = 103/253 (40.71%), Postives = 148/253 (58.50%), Query Frame = 1
Query: 1 LSTTRQIVGYNDEVIDMKSLPSGTRGKGESWIAVATNSPQVRLFELGGFSCRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVVSGAADRTLQRWDVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKGHRRGVWK 759
L T R IVG+NDE++D+K +PS T G + I VATNS Q R+F+L FSC +LD HT VL +D +P G++L T KD+ +W + V +GH++AVGA+A S+K G + G + GAF+VS +AD+TL+RW++P S D + +A + ++ L A S RAH+KDIN V+V+PND+ +A+ SQD+T K+WRS DL + +KGHRRGVW+
Sbjct: 450 LETQRTIVGHNDEILDLKVIPS-TSGDAPTRIIVATNSAQARIFDLNTFSCDVLDRHTAVVLCVDASPCGQYLATCGKDKQVRIWHTERQKSVAIATGHTEAVGAVAFSQKLGRYQVR--------GKAADNGGGAFIVSVSADKTLKRWNLP------------GSSDLNELAFNEDEATL--------------HAFLSTRAHDKDINTVSVAPNDSYIATGSQDKTAKIWRSTDLSLVATLKGHRRGVWE 667
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: A0A7S4J2H5_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J2H5_9STRA) HSP 1 Score: 174 bits (441), Expect = 2.000e-46 Identity = 109/274 (39.78%), Postives = 148/274 (54.01%), Query Frame = 1
Query: 1 LSTTRQIVGYNDEVIDMKSLPSGTRGKG-ESWIAVATNSPQVRLFE--LGGFSCR-LLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDS---------------GYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVVSGAADRTLQRWDVP-CRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKGHRRGVWKV 762
L T R IVG+NDE++D++ LPS + G E IAVATNSP VR+F FS + L GH DTVLALDV+P GR + T+ KDRT LW + G + M GH+++VGA SRK G + AG ++K GAF ++G D+T+++W +P L+ + + S +D P A SV+AH+KDIN A SP D++VA+ SQD+T+KLW S DL P G + GH+RGVW V
Sbjct: 83 LGTDRTIVGHNDEILDLRILPSSSSSGGRERRIAVATNSPTVRIFSSCADSFSAKSALIGHADTVLALDVSPCGRFVLTAGKDRTARLWSTSASATPGKTGGGGVAVGGECLAIMEGHTESVGAACLSRKVGRYDV--------AGRAALKGEGAFAITGGRDKTIKKWALPGANELLTRPSGEGSDKD----------------------GPRKVKAVLSVKAHDKDINVAASSPTDSLVATGSQDKTIKLWSSSDLSPRGTLSGHKRGVWDV 326
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: B7FX96_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FX96_PHATC) HSP 1 Score: 170 bits (431), Expect = 7.750e-45 Identity = 105/246 (42.68%), Postives = 145/246 (58.94%), Query Frame = 1
Query: 1 LSTTRQIVGYNDEVIDMKSLPSGTRGKGESWIAVATNSPQVRLFELGGFSCRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVVSGAADRTLQRWDVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKG 738
L T R IVG+ND+++D+K++P G + VATNS QVRLF+L FSC++LD HT TVL +DV+P GR++ T KD+T LW + S V +GH++A+G+ A SRK G + G + G+FVV+ + DRTL+RW++P V + +R EDR PL A SVRAHEKDIN V+V+PND++VA+ SQD+TVKLW+S DL +KG
Sbjct: 332 LQTDRTIVGHNDDILDLKAIPPPV-GHDVVHVVVATNSAQVRLFDLRNFSCQVLDRHTATVLCVDVSPCGRYVATCGKDKTMRLWSLASQSSVAVATGHTEAIGSTALSRKQGRYDVR--------GKAATNGGGSFVVTVSMDRTLKRWNLPG----VADLERLG-EDREET-------------------PL--KAFVSVRAHEKDINIVSVAPNDSLVATGSQDKTVKLWKSNDLSLQATLKG 542
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: A0A7S3PTU0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTU0_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.670e-44 Identity = 98/252 (38.89%), Postives = 151/252 (59.92%), Query Frame = 1
Query: 1 LSTTRQIVGYNDEVIDMKSLPSGTRGK--------GESWIAVATNSPQVRLFELGGFSCRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVVSGAADRTLQRWDVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVM 732
L + R I+G+NDE++DMK +P G +AVATNS Q+R+FELG +SC++LDGHT+TVL++DV+P GR+L +S KD+T LW++ + + +GH++AVGA A SRK G + AG ++ GAFVV+ + D+TL+RW++P +++ K G + + + ++V S +AH+KDIN V V+PND+++A+ SQD+TVKLW+S DL G +
Sbjct: 496 LESNRTIIGHNDEILDMKIIPDRDVGVRVDVDEALNTRKVAVATNSAQIRIFELGSYSCKVLDGHTETVLSIDVSPCGRYLASSGKDKTMRLWNLANHKCIAVATGHTEAVGATALSRKIGRFDL--------AGKAAINGGGAFVVTASKDKTLKRWNLPGASVLNKF-------------GSIDNECMDLSV------------FCSTKAHDKDINVVTVAPNDSLIATGSQDKTVKLWKSTDLGLKGTL 714 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig129240.2146.1 >prot_H-elongata_contig129240.2146.1 ID=prot_H-elongata_contig129240.2146.1|Name=mRNA_H-elongata_contig129240.2146.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp LSTTRQIVGYNDEVIDMKSLPSGTRGKGESWIAVATNSPQVRLFELGGFSback to top mRNA from alignment at H-elongata_contig129240:113..1581- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig129240.2146.1 ID=mRNA_H-elongata_contig129240.2146.1|Name=mRNA_H-elongata_contig129240.2146.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1469bp|location=Sequence derived from alignment at H-elongata_contig129240:113..1581- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig129240:113..1581- >mRNA_H-elongata_contig129240.2146.1 ID=mRNA_H-elongata_contig129240.2146.1|Name=mRNA_H-elongata_contig129240.2146.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig129240:113..1581- (Himanthalia elongata Himel1 dioecious)back to top |