mRNA_H-elongata_contig129240.2146.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129240.2146.1
Unique NamemRNA_H-elongata_contig129240.2146.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: D8LEB1_ECTSI (Utp13 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB1_ECTSI)

HSP 1 Score: 316 bits (809), Expect = 1.400e-96
Identity = 170/256 (66.41%), Postives = 190/256 (74.22%), Query Frame = 1
Query:    1 LSTTRQIVGYNDEVIDMKSLPSGTRGKGESWIAVATNSPQVRLFELGGFSCRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVVSGAADRTLQRWDVPCRALVVKE-AKRSSSEDRSAVAGDVGDSGLGVAVGDGRA-------APLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKGHR 744
            L   RQIVGYNDEVID+KS PSG    GESW+AVATNSPQVRLFEL  FSCRLLDGHTDTVLALDVAP+GRHLCTSSKDRTCLLW++D G PVVR SGH+D+VGA+AASRKPGPW+S+S          +   + AFVVSGAADRTLQRWDVPCR L   E A R S E  + VA                        APL+ETA RSVRAHE+DINCVAVSPNDAVVASASQDRT+KLW++ DLE  GV+KGH+
Sbjct:  392 LVARRQIVGYNDEVIDVKSFPSGGESDGESWVAVATNSPQVRLFELSSFSCRLLDGHTDTVLALDVAPDGRHLCTSSKDRTCLLWNVDLGVPVVRWSGHADSVGAVAASRKPGPWNSSS--------TSAAGGAAAFVVSGAADRTLQRWDVPCRPLAALEGAARDSREAAAEVAXXXXXXXXXXXXXXXXXTGVWTPPAPLLETARRSVRAHEQDINCVAVSPNDAVVASASQDRTIKLWKAADLELTGVLKGHK 639          
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: A0A7S0PX60_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PX60_9STRA)

HSP 1 Score: 193 bits (490), Expect = 6.350e-54
Identity = 110/256 (42.97%), Postives = 153/256 (59.77%), Query Frame = 1
Query:    1 LSTTRQIVGYNDEVIDMKSLPSGTR----GKGESWIAVATNSPQVRLFELGGFSCRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVVSGAADRTLQRWDVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKGHRRGVW 756
            L+  R IVG+NDE++D+K +PS ++          I VATNS QVRLFELG +SC +LDGH+ TVL +D +P GR+L T  KD+T  LW +++   +   +GH++A+GA A SRK G +           G  ++   G+F V+ + DRTL+RW++P           S   D+ A++ D                PL   A  S RAHEKDIN ++V+PND++VA+ SQD+TVKLWRS DL   G +KGHRRGVW
Sbjct:   33 LAADRTIVGHNDEILDLKVIPSSSQQTNTAPSSERIVVATNSAQVRLFELGTYSCEVLDGHSATVLCVDASPCGRYLATCGKDKTMRLWHLETQRCIGVATGHTEAIGAAALSRKVGRYDVK--------GKAAINGGGSFAVTASKDRTLKRWNLP----------GSDDLDKCALSED----------------PLELRAFVSARAHEKDINIISVAPNDSLVATGSQDKTVKLWRSTDLTLQGTLKGHRRGVW 254          
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: A0A836CIZ1_9STRA (Utp13 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ1_9STRA)

HSP 1 Score: 192 bits (488), Expect = 3.130e-52
Identity = 115/248 (46.37%), Postives = 157/248 (63.31%), Query Frame = 1
Query:    1 LSTTRQIVGYNDEVIDMKSLPSGTRGKGESWIAVATNSPQVRLFELGGFSCRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGY---------PVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVVSGAADRTLQRWDVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPL-VETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDL 714
            L T + IVGYNDE+ID+KS+PS  +   E  IAVATNSPQ+R+F++  FS  LLDGH D VLALDV+P+G++L + SKD+  ++W + +G          P++ + GH+DAVGA+  SRK GP+S+ SG               AFV++G++D+TL+R+++    L +     SSS D                 GDG AA L V+ A  SV AHEKDIN VAV+PNDA+VA+ASQD+T KLWR+ DL
Sbjct:  413 LRTAKLIVGYNDEIIDIKSIPSPGQESCERRIAVATNSPQIRIFDVDTFSATLLDGHADVVLALDVSPDGKYLSSVSKDQAGMVWPLSAGMLEGTAAPPGPLLVLRGHTDAVGAVCMSRKVGPYSAKSG---------------AFVITGSSDKTLKRYELD--GLELARLSISSSSD-----------------GDGGAAELPVKRARHSVVAHEKDINAVAVAPNDAMVATASQDKTAKLWRATDL 626          
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: A0A7S4SA35_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SA35_9STRA)

HSP 1 Score: 189 bits (479), Expect = 4.520e-51
Identity = 111/269 (41.26%), Postives = 156/269 (57.99%), Query Frame = 1
Query:    1 LSTTRQIVGYNDEVIDMKSLP----------SGTRGKGESW------IAVATNSPQVRLFELGGFSCRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSG-AFVVSGAADRTLQRWDVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKGHRRGVW 756
            L   R I+G+NDE++D++ LP          S    + ES       IAVATNS QVRLFE+G +SC +LDGHTDTVLALDV+P GR+L T  KD+T  LW + +   V   +GH++A+GA + SRK   +         + G ++ K+ G AF+V+ + DRT++RW  P    + K A+   +  +                      PL  +   S RAHEKDIN V+++PND+++A+ SQD+TVKLWRSKDL     +KGH+RGVW
Sbjct:  512 LDVDRTIIGHNDEILDLRILPTPIARDSNNESIDTNQDESVACRPQKIAVATNSAQVRLFEVGSYSCEVLDGHTDTVLALDVSPCGRYLATCGKDKTMRLWHLGTNQCVAVATGHTEAIGATSLSRKVVRY---------EVGGKAAKNGGGAFIVTASKDRTMKRWSFPGSIELNKHAETELASGKE---------------------PLALSVIGSARAHEKDINIVSIAPNDSLIATGSQDKTVKLWRSKDLTLQVTLKGHKRGVW 750          
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: A0A7S2W0N0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W0N0_9STRA)

HSP 1 Score: 182 bits (463), Expect = 6.390e-49
Identity = 112/272 (41.18%), Postives = 154/272 (56.62%), Query Frame = 1
Query:    1 LSTTRQIVGYNDEVIDMKSLP----SGTRGKGESW---------------IAVATNSPQVRLFELGGFSCRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKS-SGAFVVSGAADRTLQRWDVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKGHRRGVW 756
            L+  R IVG+NDE++D+K +P    S T  + +                 IAVATNS QVR+F LG FSC +L GHT  VL LDV+P GR+LCT+ KD+T  LWDI +G  +    GH++A+GA A SRK G +         D   +S K+ +GAF V+ + DRT++RW++P  + + K                + D G  V         L  +   S RAHEKDIN V+V+PND++VA+ SQD+TVKLW S D    G + GH+RG+W
Sbjct:  507 LALERTIVGHNDEILDIKVVPNISISTTNSEDDETKKQSIVEDDTMQPKKIAVATNSAQVRIFTLGTFSCSILSGHTKIVLCLDVSPCGRYLCTAGKDKTMRLWDISTGTCIGMAEGHTEAIGATALSRKLGRY---------DVAGKSAKNGAGAFAVTASKDRTIKRWNLPGASALKK----------------INDEGETV---------LELSTFVSARAHEKDINIVSVAPNDSLVATGSQDKTVKLWNSVDFTLKGTLSGHKRGIW 744          
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: A0A4D9D3B5_9STRA (Utp13 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3B5_9STRA)

HSP 1 Score: 180 bits (457), Expect = 4.210e-48
Identity = 117/274 (42.70%), Postives = 156/274 (56.93%), Query Frame = 1
Query:    1 LSTTRQIVGYNDEVIDMKSLPSGTRGKGESWIAVATNSPQVRLFELGGFSCR-LLDG-HTDTVLALDVAPNGRHLCTSSKDRTCLLWDID-------------------SGYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVV-SGAADRTLQRWDVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKGHRRGVW 756
            L+ +R +VGYND+VI +K LP    G+    + VA+NSPQVR+F L   SC  LL+G HT+TVLA+DV+P+GR + T SKDR+  LW +                    +G  + R  GH+DAV A+A  RK   +            + S K  G  V  S  ADRTL+RW +    L  K A+      + A  G V + G G       + P    A+ SV AH+KDIN +AVSPNDA+VASASQD+TVKLW ++DL  +GV+KGH+RGVW
Sbjct:  459 LAPSRVVVGYNDQVIAVKYLPGLGGGRDGRRVVVASNSPQVRVFRLDDLSCECLLEGQHTETVLAVDVSPDGRWVVTGSKDRSVCLWQLGPAAGAESLEEGQDGDSECVAGSCIRRYEGHTDAVSAVALGRKKAAYQL----------LASGKPGGTAVAYSAGADRTLKRWLLA--PLTPKPARHRDLRQKEAN-GKVEEHGQGKGSAGAPSVPSTTEASASVLAHDKDINALAVSPNDALVASASQDKTVKLWEARDLRAVGVLKGHKRGVW 719          
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: A0A1Z5J9L8_FISSO (U3 small nucleolar RNA-associated protein 13 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J9L8_FISSO)

HSP 1 Score: 176 bits (447), Expect = 8.370e-47
Identity = 103/253 (40.71%), Postives = 148/253 (58.50%), Query Frame = 1
Query:    1 LSTTRQIVGYNDEVIDMKSLPSGTRGKGESWIAVATNSPQVRLFELGGFSCRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVVSGAADRTLQRWDVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKGHRRGVWK 759
            L T R IVG+NDE++D+K +PS T G   + I VATNS Q R+F+L  FSC +LD HT  VL +D +P G++L T  KD+   +W  +    V   +GH++AVGA+A S+K G +           G  +    GAF+VS +AD+TL+RW++P             S D + +A +  ++ L               A  S RAH+KDIN V+V+PND+ +A+ SQD+T K+WRS DL  +  +KGHRRGVW+
Sbjct:  450 LETQRTIVGHNDEILDLKVIPS-TSGDAPTRIIVATNSAQARIFDLNTFSCDVLDRHTAVVLCVDASPCGQYLATCGKDKQVRIWHTERQKSVAIATGHTEAVGAVAFSQKLGRYQVR--------GKAADNGGGAFIVSVSADKTLKRWNLP------------GSSDLNELAFNEDEATL--------------HAFLSTRAHDKDINTVSVAPNDSYIATGSQDKTAKIWRSTDLSLVATLKGHRRGVWE 667          
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: A0A7S4J2H5_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J2H5_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.000e-46
Identity = 109/274 (39.78%), Postives = 148/274 (54.01%), Query Frame = 1
Query:    1 LSTTRQIVGYNDEVIDMKSLPSGTRGKG-ESWIAVATNSPQVRLFE--LGGFSCR-LLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDS---------------GYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVVSGAADRTLQRWDVP-CRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKGHRRGVWKV 762
            L T R IVG+NDE++D++ LPS +   G E  IAVATNSP VR+F      FS +  L GH DTVLALDV+P GR + T+ KDRT  LW   +               G  +  M GH+++VGA   SRK G +          AG  ++K  GAF ++G  D+T+++W +P    L+ + +   S +D                       P    A  SV+AH+KDIN  A SP D++VA+ SQD+T+KLW S DL P G + GH+RGVW V
Sbjct:   83 LGTDRTIVGHNDEILDLRILPSSSSSGGRERRIAVATNSPTVRIFSSCADSFSAKSALIGHADTVLALDVSPCGRFVLTAGKDRTARLWSTSASATPGKTGGGGVAVGGECLAIMEGHTESVGAACLSRKVGRYDV--------AGRAALKGEGAFAITGGRDKTIKKWALPGANELLTRPSGEGSDKD----------------------GPRKVKAVLSVKAHDKDINVAASSPTDSLVATGSQDKTIKLWSSSDLSPRGTLSGHKRGVWDV 326          
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: B7FX96_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FX96_PHATC)

HSP 1 Score: 170 bits (431), Expect = 7.750e-45
Identity = 105/246 (42.68%), Postives = 145/246 (58.94%), Query Frame = 1
Query:    1 LSTTRQIVGYNDEVIDMKSLPSGTRGKGESWIAVATNSPQVRLFELGGFSCRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVVSGAADRTLQRWDVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKG 738
            L T R IVG+ND+++D+K++P    G     + VATNS QVRLF+L  FSC++LD HT TVL +DV+P GR++ T  KD+T  LW + S   V   +GH++A+G+ A SRK G +           G  +    G+FVV+ + DRTL+RW++P     V + +R   EDR                      PL   A  SVRAHEKDIN V+V+PND++VA+ SQD+TVKLW+S DL     +KG
Sbjct:  332 LQTDRTIVGHNDDILDLKAIPPPV-GHDVVHVVVATNSAQVRLFDLRNFSCQVLDRHTATVLCVDVSPCGRYVATCGKDKTMRLWSLASQSSVAVATGHTEAIGSTALSRKQGRYDVR--------GKAATNGGGSFVVTVSMDRTLKRWNLPG----VADLERLG-EDREET-------------------PL--KAFVSVRAHEKDINIVSVAPNDSLVATGSQDKTVKLWKSNDLSLQATLKG 542          
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Match: A0A7S3PTU0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTU0_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.670e-44
Identity = 98/252 (38.89%), Postives = 151/252 (59.92%), Query Frame = 1
Query:    1 LSTTRQIVGYNDEVIDMKSLPSGTRGK--------GESWIAVATNSPQVRLFELGGFSCRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGYPVVRMSGHSDAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVVSGAADRTLQRWDVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATRSVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVM 732
            L + R I+G+NDE++DMK +P    G             +AVATNS Q+R+FELG +SC++LDGHT+TVL++DV+P GR+L +S KD+T  LW++ +   +   +GH++AVGA A SRK G +          AG  ++   GAFVV+ + D+TL+RW++P  +++ K              G + +  + ++V              S +AH+KDIN V V+PND+++A+ SQD+TVKLW+S DL   G +
Sbjct:  496 LESNRTIIGHNDEILDMKIIPDRDVGVRVDVDEALNTRKVAVATNSAQIRIFELGSYSCKVLDGHTETVLSIDVSPCGRYLASSGKDKTMRLWNLANHKCIAVATGHTEAVGATALSRKIGRFDL--------AGKAAINGGGAFVVTASKDKTLKRWNLPGASVLNKF-------------GSIDNECMDLSV------------FCSTKAHDKDINVVTVAPNDSLIATGSQDKTVKLWKSTDLGLKGTL 714          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129240.2146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEB1_ECTSI1.400e-9666.41Utp13 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S0PX60_9STRA6.350e-5442.97Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A836CIZ1_9STRA3.130e-5246.37Utp13 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S4SA35_9STRA4.520e-5141.26Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S2W0N0_9STRA6.390e-4941.18Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A4D9D3B5_9STRA4.210e-4842.70Utp13 domain-containing protein n=2 Tax=Monodopsid... [more]
A0A1Z5J9L8_FISSO8.370e-4740.71U3 small nucleolar RNA-associated protein 13 n=2 T... [more]
A0A7S4J2H5_9STRA2.000e-4639.78Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
B7FX96_PHATC7.750e-4542.68Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A7S3PTU0_9STRA1.670e-4438.89Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129240contigH-elongata_contig129240:113..1581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.0
Seed ortholog evalue8e-84
Seed eggNOG ortholog2880.D8LEB1
Preferred nameTBL3
KEGG koko:K14555
KEGG Pathwayko03008,map03008
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.Transducin beta-like protein 3
EggNOG OGsKOG0319@1,KOG0319@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons3
Model size762
Cds size762
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129240.2146.1prot_H-elongata_contig129240.2146.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129240 113..1581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929768.5795255-CDS-H-elongata_contig129240:112..6651622929768.5795255-CDS-H-elongata_contig129240:112..665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129240 113..665 -
1691679150.37865-CDS-H-elongata_contig129240:112..6651691679150.37865-CDS-H-elongata_contig129240:112..665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129240 113..665 -
1622929768.5924191-CDS-H-elongata_contig129240:1075..11641622929768.5924191-CDS-H-elongata_contig129240:1075..1164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129240 1076..1164 -
1691679150.3884861-CDS-H-elongata_contig129240:1075..11641691679150.3884861-CDS-H-elongata_contig129240:1075..1164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129240 1076..1164 -
1622929768.6086638-CDS-H-elongata_contig129240:1461..15811622929768.6086638-CDS-H-elongata_contig129240:1461..1581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129240 1462..1581 -
1691679150.3962953-CDS-H-elongata_contig129240:1461..15811691679150.3962953-CDS-H-elongata_contig129240:1461..1581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129240 1462..1581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129240.2146.1

>prot_H-elongata_contig129240.2146.1 ID=prot_H-elongata_contig129240.2146.1|Name=mRNA_H-elongata_contig129240.2146.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
LSTTRQIVGYNDEVIDMKSLPSGTRGKGESWIAVATNSPQVRLFELGGFS
CRLLDGHTDTVLALDVAPNGRHLCTSSKDRTCLLWDIDSGYPVVRMSGHS
DAVGAIAASRKPGPWSSTSGGSGSDAGIRSVKSSGAFVVSGAADRTLQRW
DVPCRALVVKEAKRSSSEDRSAVAGDVGDSGLGVAVGDGRAAPLVETATR
SVRAHEKDINCVAVSPNDAVVASASQDRTVKLWRSKDLEPLGVMKGHRRG
VWKV
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mRNA from alignment at H-elongata_contig129240:113..1581-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129240.2146.1 ID=mRNA_H-elongata_contig129240.2146.1|Name=mRNA_H-elongata_contig129240.2146.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1469bp|location=Sequence derived from alignment at H-elongata_contig129240:113..1581- (Himanthalia elongata Himel1 dioecious)
TTGTCGACGACCAGGCAGATTGTGGGGTACAACGACGAGGTTATTGACAT GAAGAGCTTGCCGAGTGGTACCAGGGGGAAGGGAGAGAGCTGGATCGCCG TGGCCACGAACAGCCCGCAGGTATTTGTGTTTTGATTAGACTTACAAAAG CTCTAGGGAAAAAATACCAACCGGGAAGTGGTGGGGGTATAGGTATCTGA TTTATATATATATATATTTGCCTATTTTAAGTGTGTTCTATGTTTTCGAT GTGTTCGTGTTGCTGGCAAGTGTTTCATGTATAGTATGTAGCTGTGCTAT TGTAATATAATATATAGTTTTGATATAGTAATATGGCTTTATGATACTAC TGTAACATCTTTGCTGTGTTATAGTTATATAAGATGTGGTTTTGATTTGT TCCGCTCCAATCCCCAGGTTAGGCTGTTCGAGCTCGGCGGCTTCTCGTGC CGTTTGTTGGACGGACACACGGACACGGTGCTAGCCCTCGACGTTGCACC GAACGGGTGAGAAAAAAACGGGGTCGGCCAAGGCGTGACTGTATCCGTAA CGGCACCTTAGTAACTGAATCCGTAACCATACTCTAGCAACTGTAACCGT AATGGCACTCTACTATTAATAGTGACTATCCGTTCCGGTACTCTAGCGAA CTCTTTCTGTAACCGTACTCTGTTAATAGTAACTGTACGCATAATAGTAG TACTCTAGTAACTGTAAATCAAAACCGGCGCCTTTTATTCTTATTTTTCT TAAGAAAATAAAAGTTCCAAGCCCGGTTGACGATGACGCCCGTGCTTTTT TCACGCCCTTTTGCCTTCCTTTACCGTCCCCAACCCCCCCCCCCTGCCTA ATCTAAAATAATCAACAAATTAAACAAAATCAATGTATGGATGGATCAAT CATGGTTATCTTTCAGGCGGCACCTCTGCACCTCCTCCAAGGATCGCACT TGCCTCCTGTGGGACATCGATTCGGGCTATCCCGTTGTGCGCATGTCGGG ACACTCTGATGCCGTTGGCGCAATCGCTGCCTCCCGCAAGCCCGGACCCT GGTCCTCTACTTCTGGGGGTTCCGGATCCGATGCCGGTATTCGTTCCGTG AAGAGCAGTGGCGCCTTCGTGGTGAGCGGTGCCGCTGACCGCACCCTCCA GCGGTGGGACGTTCCCTGCCGCGCTCTGGTGGTTAAGGAAGCGAAACGGT CTAGCTCTGAAGATCGGTCGGCAGTGGCTGGGGATGTTGGTGATAGTGGG TTAGGTGTTGCGGTGGGGGATGGAAGGGCGGCGCCACTGGTGGAGACGGC GACTAGAAGCGTGCGGGCCCACGAGAAGGACATCAACTGCGTGGCGGTTT CGCCCAACGACGCCGTGGTGGCGAGCGCCTCGCAGGATCGTACGGTGAAG CTCTGGCGGTCTAAGGATCTGGAACCCCTGGGAGTGATGAAGGGGCACAG AAGGGGCGTGTGGAAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig129240:113..1581-

>mRNA_H-elongata_contig129240.2146.1 ID=mRNA_H-elongata_contig129240.2146.1|Name=mRNA_H-elongata_contig129240.2146.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig129240:113..1581- (Himanthalia elongata Himel1 dioecious)
TTGTCGACGACCAGGCAGATTGTGGGGTACAACGACGAGGTTATTGACAT
GAAGAGCTTGCCGAGTGGTACCAGGGGGAAGGGAGAGAGCTGGATCGCCG
TGGCCACGAACAGCCCGCAGTTGTCGACGACCAGGCAGATTGTGGGGTAC
AACGACGAGGTTATTGACATGAAGAGCTTGCCGAGTGGTACCAGGGGGAA
GGGAGAGAGCTGGATCGCCGTGGCCACGAACAGCCCGCAGGTTAGGCTGT
TCGAGCTCGGCGGCTTCTCGTGCCGTTTGTTGGACGGACACACGGACACG
GTGCTAGCCCTCGACGTTGCACCGAACGGGTTAGGCTGTTCGAGCTCGGC
GGCTTCTCGTGCCGTTTGTTGGACGGACACACGGACACGGTGCTAGCCCT
CGACGTTGCACCGAACGGGCGGCACCTCTGCACCTCCTCCAAGGATCGCA
CTTGCCTCCTGTGGGACATCGATTCGGGCTATCCCGTTGTGCGCATGTCG
GGACACTCTGATGCCGTTGGCGCAATCGCTGCCTCCCGCAAGCCCGGACC
CTGGTCCTCTACTTCTGGGGGTTCCGGATCCGATGCCGGTATTCGTTCCG
TGAAGAGCAGTGGCGCCTTCGTGGTGAGCGGTGCCGCTGACCGCACCCTC
CAGCGGTGGGACGTTCCCTGCCGCGCTCTGGTGGTTAAGGAAGCGAAACG
GTCTAGCTCTGAAGATCGGTCGGCAGTGGCTGGGGATGTTGGTGATAGTG
GGTTAGGTGTTGCGGTGGGGGATGGAAGGGCGGCGCCACTGGTGGAGACG
GCGACTAGAAGCGTGCGGGCCCACGAGAAGGACATCAACTGCGTGGCGGT
TTCGCCCAACGACGCCGTGGTGGCGAGCGCCTCGCAGGATCGTACGGTGA
AGCTCTGGCGGTCTAAGGATCTGGAACCCCTGGGAGTGATGAAGGGGCAC
AGAAGGGGCGTGTGGAAGGTAGCGGCACCTCTGCACCTCCTCCAAGGATC
GCACTTGCCTCCTGTGGGACATCGATTCGGGCTATCCCGTTGTGCGCATG
TCGGGACACTCTGATGCCGTTGGCGCAATCGCTGCCTCCCGCAAGCCCGG
ACCCTGGTCCTCTACTTCTGGGGGTTCCGGATCCGATGCCGGTATTCGTT
CCGTGAAGAGCAGTGGCGCCTTCGTGGTGAGCGGTGCCGCTGACCGCACC
CTCCAGCGGTGGGACGTTCCCTGCCGCGCTCTGGTGGTTAAGGAAGCGAA
ACGGTCTAGCTCTGAAGATCGGTCGGCAGTGGCTGGGGATGTTGGTGATA
GTGGGTTAGGTGTTGCGGTGGGGGATGGAAGGGCGGCGCCACTGGTGGAG
ACGGCGACTAGAAGCGTGCGGGCCCACGAGAAGGACATCAACTGCGTGGC
GGTTTCGCCCAACGACGCCGTGGTGGCGAGCGCCTCGCAGGATCGTACGG
TGAAGCTCTGGCGGTCTAAGGATCTGGAACCCCTGGGAGTGATGAAGGGG
CACAGAAGGGGCGTGTGGAAGGTA
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