prot_H-elongata_contig12923.2145.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12923.2145.1
Unique Nameprot_H-elongata_contig12923.2145.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length622
Homology
BLAST of mRNA_H-elongata_contig12923.2145.1 vs. uniprot
Match: A0A6H5JNI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI7_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 9.960e-76
Identity = 268/770 (34.81%), Postives = 366/770 (47.53%), Query Frame = 0
Query:    1 RAFRNILISPERV---GTIHPIAAAEILHRFDEDHLKLPPRKDSEPSVKSHQDDGCWIPDSRQVHVTFMGTTMEISVKAGDLRALDRPLQCKLALDALKNDPKTME-----EPPPLEYLETGSTEDGSCGIGMEAGATGFALSQFAAGCSSPSP-----------------APAAFAEA------GGADAFKIN-YPESVSEPAPEVRVNRGTPTRRRKK------------KKAVKAVDGVV-YELPTYVQNVDTKLGRSTLRLKMPLSGFLVNGESVSVADLVVAYGLEVSRKNLLALRACREAMLTNFAGQELVKRAVAAELFHVWVKRG--DGRENESAEA---EASPSDVHDPVESPQQRANAN-------TPPWSPENPDKGSSRDST-------------------------------------GRRGAKVA------------------------------AETDDATNGS-------------------TAPGVATQ---GSLGAKSRSALADDVVIRFAGPVSSPGDKRIEVKMMVGELRRTRQNRLAEYRQLLVAMLNDSEVQSGELGVLEPSAHPTPTLTEQNSSGAAEXXXXXXXXXXVASPNDYNGEPSTVPMPPQKQRPHKRSPAE---------WSVNESTLAHAER-GKRPRYERMRVGGGIDVGGXXXXXXXXXXXXIEAGXXXXXXSKRRRQLWMLAIRDNEVRYDRRKEEARREYELRQQQLLRWMVDEEAGRHNE-SGEVGPPPVVEMD 613
            RAFR+ L+  +R     +IH I AAE + R+DE+H+K PP   S     SH   G WIPDSR +H+T+ G+ ME+ VKAGDLRA++RPLQCK+AL+ALK+DPK +E      PP ++   +G  E     +G E GATGF+ S  +   +S  P                 APA  A A      GGA AF  + + +      P  +    T   R               ++  +  +G V Y+LP +VQ V+ K  R +LRLK+PL+GF+V+GE V  ++LVVA+GL+++RKNLLALRAC +A+L NFA  +LVKR +A E+F VW +R   D R   SA+A    A    V +  ESP   A              SP   + G S+  T                                        GA  A                               + D A+ G                    TAP VAT    G LG +S +AL +D V   + P S PG  RIE++M   ELRR RQ + A  + LL  ML D++VQ+GEL V+   +  +P +T  N SGAA XXXXXXXXX V   N +    +T  +   K+   K S +          +S  +     AER G      R++    +D               I         S +RRQLW LAIR+NE+R++R KE+ R EY++RQ++L+ WMVDEEAGRH+   G  GPPP V +D
Sbjct:  168 RAFRDTLLPTDRSKMPSSIHTIIAAEAMIRYDEEHVK-PPEGSSFAEESSHYGAGRWIPDSRVIHMTYTGSDMELRVKAGDLRAVNRPLQCKMALEALKSDPKVLEGKLEPAPPSVDVYGSGGAET----VGPEPGATGFSRSPESLQPASSDPRSGGRRVAGGGEGXXSRAPAGGANAEFSLLFGGAAAFANDGFVDDHDNGRPRTKDLDSTSMHRXXXXXXXXXXXXXXTEEGGEGGEGAVEYDLPLHVQIVEGKQCRPSLRLKVPLTGFMVDGEIVPSSELVVAHGLDITRKNLLALRACCDAVLANFAAPDLVKRVIAGEVFRVWTRRRGEDMRARRSADAILGTAQSPGVSELDESPPAPAMPTDVVPLTVVDSGSPVLLEGGGSQTQTEAMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEPSGEGAVAAXXXEMXXXXXXXXXXXXXTGGTMLSSPPAEVDLDTASEGGDGGAPAISHLVVTPAITRGTAPTVATAPPVGGLGVRS-AALGNDDVFTLSSPTSFPGGPRIELRMTASELRRARQTKAAALKTLLATMLQDAKVQAGELDVVHGMS--SPAITRSNLSGAAXXXXXXXXXXVVTRANLH----TTALLVSGKEEREKASRSNSNSAVRNVGYSGRDIGTKVAERWGATLLLHRVKRAKAVDYSPLGPCEVAAAPGDISV-MPITKASSQRRQLWALAIRENELRHERMKEDGRSEYDVRQKELVSWMVDEEAGRHDHLDGTAGPPPPVWLD 924          
BLAST of mRNA_H-elongata_contig12923.2145.1 vs. uniprot
Match: D8LTH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH9_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 2.250e-27
Identity = 107/273 (39.19%), Postives = 148/273 (54.21%), Query Frame = 0
Query:  362 TQGSLGAKSRSALADDVVIRFAGPVSSPGDKRIEVKMMVGELRRTRQNRLAEYRQLLVAMLNDSEVQSGELGVLEPSAHPTPTLTEQNSSGAAEXXXXXXXXXXVASPNDYNGEPSTVPMPPQKQRPHKRSPAEWSVNESTLAHAER--GKRP-----------RYERMRVGGGIDVGGXXXXXXXXXXXXIEAGXXXXXXSKRRRQLWMLAIRDNEVRYDRRKEEARREYELRQQQLLRWMVDEEAGRHNE-SGEVGPPPVVEMDRRTGTCT 620
            T G LG +S +AL +D V   + P S PG  RIE++M   ELRR RQ + A  ++LL  ML D++VQ+GEL V+   + P   +T  N SGAA XXXXXXXXXXV   N +    +T  +   K+   K S +  +     + ++ R  G +            R +R R      +G             +         S +RRQLW LAIR+NE+R++R KE++R EY++RQ++LL WMVDEEAGRH+   G  GPPP V +D  T  CT
Sbjct:   47 TVGGLGVRS-AALGNDDVFTLSSPTSFPGGPRIELRMTASELRRARQTKAAALKKLLATMLQDAKVQAGELDVVHGMSGPA--ITRSNLSGAAXXXXXXXXXXXVTRANLH----TTALLVSGKEEREKASKSTSNSAVRNVGYSGRDIGSKVAERWGATLLLHRVKRARAADSSPLGPCGVAAAPGDISVVPI----TTASSQRRQLWALAIRENELRHERMKEDSRSEYDVRQKELLSWMVDEEAGRHDHLDGTAGPPPPVWLD--TDRCT 306          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12923.2145.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNI7_9PHAE9.960e-7634.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTH9_ECTSI2.250e-2739.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12923contigH-elongata_contig12923:442..2641 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12923.2145.1mRNA_H-elongata_contig12923.2145.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12923 442..2641 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12923.2145.1 ID=prot_H-elongata_contig12923.2145.1|Name=mRNA_H-elongata_contig12923.2145.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=622bp
RAFRNILISPERVGTIHPIAAAEILHRFDEDHLKLPPRKDSEPSVKSHQD
DGCWIPDSRQVHVTFMGTTMEISVKAGDLRALDRPLQCKLALDALKNDPK
TMEEPPPLEYLETGSTEDGSCGIGMEAGATGFALSQFAAGCSSPSPAPAA
FAEAGGADAFKINYPESVSEPAPEVRVNRGTPTRRRKKKKAVKAVDGVVY
ELPTYVQNVDTKLGRSTLRLKMPLSGFLVNGESVSVADLVVAYGLEVSRK
NLLALRACREAMLTNFAGQELVKRAVAAELFHVWVKRGDGRENESAEAEA
SPSDVHDPVESPQQRANANTPPWSPENPDKGSSRDSTGRRGAKVAAETDD
ATNGSTAPGVATQGSLGAKSRSALADDVVIRFAGPVSSPGDKRIEVKMMV
GELRRTRQNRLAEYRQLLVAMLNDSEVQSGELGVLEPSAHPTPTLTEQNS
SGAAEAAAAEAAAAAVASPNDYNGEPSTVPMPPQKQRPHKRSPAEWSVNE
STLAHAERGKRPRYERMRVGGGIDVGGGSGASSSSSAEGIEAGAAALLAS
KRRRQLWMLAIRDNEVRYDRRKEEARREYELRQQQLLRWMVDEEAGRHNE
SGEVGPPPVVEMDRRTGTCTP*
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