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Homology
BLAST of mRNA_H-elongata_contig12923.2145.1 vs. uniprot
Match: A0A6H5JNI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI7_9PHAE) HSP 1 Score: 269 bits (688), Expect = 9.960e-76 Identity = 268/770 (34.81%), Postives = 366/770 (47.53%), Query Frame = 1
Query: 1 RAFRNILISPERV---GTIHPIAAAEILHRFDEDHLKLPPRKDSEPSVKSHQDDGCWIPDSRQVHVTFMGTTMEISVKAGDLRALDRPLQCKLALDALKNDPKTME-----EPPPLEYLETGSTEDGSCGIGMEAGATGFALSQFAAGCSSPSP-----------------APAAFAEA------GGADAFKIN-YPESVSEPAPEVRVNRGTPTRRRKK------------KKAVKAVDGVV-YELPTYVQNVDTKLGRSTLRLKMPLSGFLVNGESVSVADLVVAYGLEVSRKNLLALRACREAMLTNFAGQELVKRAVAAELFHVWVKRG--DGRENESAEA---EASPSDVHDPVESPQQRANAN-------TPPWSPENPDKGSSRDST-------------------------------------GRRGAKVA------------------------------AETDDATNGS-------------------TAPGVATQ---GSLGAKSRSALADDVVIRFAGPVSSPGDKRIEVKMMVGELRRTRQNRLAEYRQLLVAMLNDSEVQSGELGVLEPSAHPTPTLTEQNSSGAAEXXXXXXXXXXVASPNDYNGEPSTVPMPPQKQRPHKRSPAE---------WSVNESTLAHAER-GKRPRYERMRVGGGIDVGGXXXXXXXXXXXXIEAGXXXXXXSKRRRQLWMLAIRDNEVRYDRRKEEARREYELRQQQLLRWMVDEEAGRHNE-SGEVGPPPVVEMD 1839
RAFR+ L+ +R +IH I AAE + R+DE+H+K PP S SH G WIPDSR +H+T+ G+ ME+ VKAGDLRA++RPLQCK+AL+ALK+DPK +E PP ++ +G E +G E GATGF+ S + +S P APA A A GGA AF + + + P + T R ++ + +G V Y+LP +VQ V+ K R +LRLK+PL+GF+V+GE V ++LVVA+GL+++RKNLLALRAC +A+L NFA +LVKR +A E+F VW +R D R SA+A A V + ESP A SP + G S+ T GA A + D A+ G TAP VAT G LG +S +AL +D V + P S PG RIE++M ELRR RQ + A + LL ML D++VQ+GEL V+ + +P +T N SGAA XXXXXXXXX V N + +T + K+ K S + +S + AER G R++ +D I S +RRQLW LAIR+NE+R++R KE+ R EY++RQ++L+ WMVDEEAGRH+ G GPPP V +D
Sbjct: 168 RAFRDTLLPTDRSKMPSSIHTIIAAEAMIRYDEEHVK-PPEGSSFAEESSHYGAGRWIPDSRVIHMTYTGSDMELRVKAGDLRAVNRPLQCKMALEALKSDPKVLEGKLEPAPPSVDVYGSGGAET----VGPEPGATGFSRSPESLQPASSDPRSGGRRVAGGGEGXXSRAPAGGANAEFSLLFGGAAAFANDGFVDDHDNGRPRTKDLDSTSMHRXXXXXXXXXXXXXXTEEGGEGGEGAVEYDLPLHVQIVEGKQCRPSLRLKVPLTGFMVDGEIVPSSELVVAHGLDITRKNLLALRACCDAVLANFAAPDLVKRVIAGEVFRVWTRRRGEDMRARRSADAILGTAQSPGVSELDESPPAPAMPTDVVPLTVVDSGSPVLLEGGGSQTQTEAMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEPSGEGAVAAXXXEMXXXXXXXXXXXXXTGGTMLSSPPAEVDLDTASEGGDGGAPAISHLVVTPAITRGTAPTVATAPPVGGLGVRS-AALGNDDVFTLSSPTSFPGGPRIELRMTASELRRARQTKAAALKTLLATMLQDAKVQAGELDVVHGMS--SPAITRSNLSGAAXXXXXXXXXXVVTRANLH----TTALLVSGKEEREKASRSNSNSAVRNVGYSGRDIGTKVAERWGATLLLHRVKRAKAVDYSPLGPCEVAAAPGDISV-MPITKASSQRRQLWALAIRENELRHERMKEDGRSEYDVRQKELVSWMVDEEAGRHDHLDGTAGPPPPVWLD 924
BLAST of mRNA_H-elongata_contig12923.2145.1 vs. uniprot
Match: D8LTH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH9_ECTSI) HSP 1 Score: 123 bits (308), Expect = 2.250e-27 Identity = 107/273 (39.19%), Postives = 148/273 (54.21%), Query Frame = 1
Query: 1084 TQGSLGAKSRSALADDVVIRFAGPVSSPGDKRIEVKMMVGELRRTRQNRLAEYRQLLVAMLNDSEVQSGELGVLEPSAHPTPTLTEQNSSGAAEXXXXXXXXXXVASPNDYNGEPSTVPMPPQKQRPHKRSPAEWSVNESTLAHAER--GKRP-----------RYERMRVGGGIDVGGXXXXXXXXXXXXIEAGXXXXXXSKRRRQLWMLAIRDNEVRYDRRKEEARREYELRQQQLLRWMVDEEAGRHNE-SGEVGPPPVVEMDRRTGTCT 1860
T G LG +S +AL +D V + P S PG RIE++M ELRR RQ + A ++LL ML D++VQ+GEL V+ + P +T N SGAA XXXXXXXXXXV N + +T + K+ K S + + + ++ R G + R +R R +G + S +RRQLW LAIR+NE+R++R KE++R EY++RQ++LL WMVDEEAGRH+ G GPPP V +D T CT
Sbjct: 47 TVGGLGVRS-AALGNDDVFTLSSPTSFPGGPRIELRMTASELRRARQTKAAALKKLLATMLQDAKVQAGELDVVHGMSGPA--ITRSNLSGAAXXXXXXXXXXXVTRANLH----TTALLVSGKEEREKASKSTSNSAVRNVGYSGRDIGSKVAERWGATLLLHRVKRARAADSSPLGPCGVAAAPGDISVVPI----TTASSQRRQLWALAIRENELRHERMKEDSRSEYDVRQKELLSWMVDEEAGRHDHLDGTAGPPPPVWLD--TDRCT 306
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1866 |
| Cds size | 1866 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929768.494934-CDS-H-elongata_contig12923:441..1208 | 1622929768.494934-CDS-H-elongata_contig12923:441..1208 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12923 442..1208 + |
| 1691679150.362474-CDS-H-elongata_contig12923:441..1208 | 1691679150.362474-CDS-H-elongata_contig12923:441..1208 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12923 442..1208 + |
| 1622929768.5350795-CDS-H-elongata_contig12923:1542..2641 | 1622929768.5350795-CDS-H-elongata_contig12923:1542..2641 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12923 1543..2641 + |
| 1691679150.3701658-CDS-H-elongata_contig12923:1542..2641 | 1691679150.3701658-CDS-H-elongata_contig12923:1542..2641 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12923 1543..2641 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12923.2145.1 >prot_H-elongata_contig12923.2145.1 ID=prot_H-elongata_contig12923.2145.1|Name=mRNA_H-elongata_contig12923.2145.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=622bp
RAFRNILISPERVGTIHPIAAAEILHRFDEDHLKLPPRKDSEPSVKSHQD DGCWIPDSRQVHVTFMGTTMEISVKAGDLRALDRPLQCKLALDALKNDPK TMEEPPPLEYLETGSTEDGSCGIGMEAGATGFALSQFAAGCSSPSPAPAA FAEAGGADAFKINYPESVSEPAPEVRVNRGTPTRRRKKKKAVKAVDGVVY ELPTYVQNVDTKLGRSTLRLKMPLSGFLVNGESVSVADLVVAYGLEVSRK NLLALRACREAMLTNFAGQELVKRAVAAELFHVWVKRGDGRENESAEAEA SPSDVHDPVESPQQRANANTPPWSPENPDKGSSRDSTGRRGAKVAAETDD ATNGSTAPGVATQGSLGAKSRSALADDVVIRFAGPVSSPGDKRIEVKMMV GELRRTRQNRLAEYRQLLVAMLNDSEVQSGELGVLEPSAHPTPTLTEQNS SGAAEAAAAEAAAAAVASPNDYNGEPSTVPMPPQKQRPHKRSPAEWSVNE STLAHAERGKRPRYERMRVGGGIDVGGGSGASSSSSAEGIEAGAAALLAS KRRRQLWMLAIRDNEVRYDRRKEEARREYELRQQQLLRWMVDEEAGRHNE SGEVGPPPVVEMDRRTGTCTP* back to topmRNA from alignment at H-elongata_contig12923:442..2641+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig12923.2145.1 ID=mRNA_H-elongata_contig12923.2145.1|Name=mRNA_H-elongata_contig12923.2145.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2200bp|location=Sequence derived from alignment at H-elongata_contig12923:442..2641+ (Himanthalia elongata Himel1 dioecious) AGAGCTTTCCGGAACATCCTCATCTCACCAGAACGCGTGGGTACAATACA
CCCGATCGCCGCGGCAGAGATCCTGCACCGTTTTGACGAGGACCACCTCA
AGCTACCGCCGAGGAAGGACTCGGAGCCATCGGTGAAATCGCACCAAGAT
GACGGATGCTGGATCCCGGATTCTCGGCAGGTTCACGTGACCTTCATGGG
TACCACCATGGAGATAAGCGTGAAGGCGGGAGACCTCCGAGCCTTGGACC
GACCACTCCAGTGCAAGCTTGCCCTCGACGCTCTTAAGAACGACCCGAAG
ACGATGGAGGAGCCGCCGCCCCTGGAGTATCTCGAGACAGGCTCCACAGA
GGATGGCTCATGCGGGATCGGGATGGAGGCAGGGGCAACGGGCTTTGCGC
TCTCACAGTTTGCCGCCGGATGCTCATCGCCCTCGCCAGCCCCGGCGGCT
TTTGCTGAAGCTGGTGGCGCCGACGCGTTCAAGATCAACTATCCCGAGTC
GGTGTCGGAGCCCGCCCCGGAAGTGAGGGTGAACCGGGGCACCCCGACCC
GACGCCGGAAGAAAAAGAAGGCCGTAAAGGCCGTGGACGGGGTAGTCTAC
GAGCTGCCCACCTACGTGCAGAATGTCGACACCAAGCTGGGTAGGTCCAC
GCTGCGGCTGAAGATGCCGCTGAGCGGTTTCTTGGTGAACGGGGAGTCCG
TATCGGTGGCGGACCTTGTTGTCGCCTACGGCCTGGAAGTTTCCCGGAAG
AATCTCCTGGCTCTCAGGTACTGGGCTTGCCGCCTTTGTGATAGTGGATC
GATGATCGTTCGGCCGAGCCGGCGTTAAAATCCTTTATACGAAATTTGTT
GAACGTAATATATATATATACATAATAATCTCTCTCTCAATCTCAATCTC
TCTCGCGAGTCTTGATGACGAGCATGTGCTGATAAAAAGGGCAAATAGTT
GATAAAATTATTCCACACCAGCGTTGTTCTGCTGTTATGTGAAAACCTTG
GCTGACGTATTTCCCGGTCGCTTTTTCTCCTCGCGGTATTATCCTCCTGC
GTGCGTGCGTTTGTGCGTGCGCGGCGCCTATTTTGCTGTATATCTTGCCA
GAGCGTGCCGAGAGGCCATGCTGACAAACTTCGCTGGCCAAGAGTTAGTG
AAACGCGCAGTCGCGGCCGAGCTCTTCCATGTCTGGGTCAAGCGAGGGGA
CGGTCGAGAGAATGAGAGCGCGGAAGCCGAGGCGTCGCCAAGCGACGTGC
ACGATCCAGTAGAGTCCCCGCAGCAGCGCGCTAACGCCAACACACCACCG
TGGTCTCCAGAAAACCCAGACAAGGGATCTTCAAGGGACTCGACCGGGAG
GCGTGGGGCAAAGGTGGCTGCAGAGACGGACGATGCTACCAACGGTTCGA
CCGCCCCCGGCGTGGCTACTCAGGGGTCGCTTGGTGCAAAGTCGCGCTCC
GCTCTCGCCGACGACGTCGTGATTCGGTTCGCTGGTCCCGTGAGTTCTCC
GGGGGATAAACGGATTGAGGTGAAAATGATGGTGGGGGAGCTGCGAAGGA
CCCGCCAGAACCGGTTGGCTGAATACAGGCAGCTCCTCGTGGCGATGCTC
AATGACTCCGAAGTGCAGTCTGGGGAGCTGGGCGTTCTTGAGCCATCGGC
CCACCCCACGCCCACTCTAACGGAGCAGAACTCGAGCGGGGCGGCTGAGG
CTGCTGCTGCGGAGGCGGCGGCAGCAGCGGTAGCATCGCCGAACGATTAC
AATGGAGAGCCGAGCACAGTGCCGATGCCTCCTCAGAAACAGCGACCGCA
CAAGCGATCTCCCGCAGAGTGGTCAGTCAACGAGTCGACGCTGGCTCACG
CAGAACGCGGGAAGAGACCGAGGTACGAAAGGATGCGCGTCGGCGGAGGC
ATAGACGTCGGCGGAGGATCAGGGGCCTCGTCCTCATCCTCGGCGGAGGG
GATCGAGGCGGGAGCAGCGGCACTCTTAGCTAGTAAGCGTCGACGGCAGC
TGTGGATGCTCGCTATCCGCGACAACGAGGTGCGGTACGATCGGCGAAAG
GAAGAGGCGCGGAGGGAGTATGAGCTGCGGCAGCAGCAGCTGCTCCGGTG
GATGGTCGACGAGGAGGCGGGTCGACACAATGAAAGCGGAGAGGTCGGCC
CGCCCCCCGTGGTGGAGATGGATAGGCGGACCGGGACGTGCACCCCTTAA
back to topCoding sequence (CDS) from alignment at H-elongata_contig12923:442..2641+ >mRNA_H-elongata_contig12923.2145.1 ID=mRNA_H-elongata_contig12923.2145.1|Name=mRNA_H-elongata_contig12923.2145.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3732bp|location=Sequence derived from alignment at H-elongata_contig12923:442..2641+ (Himanthalia elongata Himel1 dioecious) AGAGCTTTCCGGAACATCCTCATCTCACCAGAACGCGTGGGTACAATACA CCCGATCGCCGCGGCAGAGATCCTGCACCGTTTTGACGAGGACCACCTCA AGCTACCGCCGAGGAAGGACTCGGAGCCATCGGTGAAATCGCACCAAGAT GACGGATGCTGGATCCCGGATTCTCGGCAGGTTCACGTGACCTTCATGGG TACCACCATGGAGATAAGCGTGAAGGCGGGAGACCTCCGAGCCTTGGACC GACCACTCCAGTGCAAGCTTGCCCTCGACGCTCTTAAGAACGACCCGAAG ACGATGGAGGAGCCGCCGCCCCTGGAGTATCTCGAGACAGGCTCCACAGA GGATGGCTCATGCGGGATCGGGATGGAGGCAGGGGCAACGGGCTTTGCGC TCTCACAGTTTGCCGCCGGATGCTCATCGCCCTCGCCAGCCCCGGCGGCT TTTGCTGAAGCTGGTGGCGCCGACGCGTTCAAGATCAACTATCCCGAGTC GGTGTCGGAGCCCGCCCCGGAAGTGAGGGTGAACCGGGGCACCCCGACCC GACGCCGGAAGAAAAAGAAGGCCGTAAAGGCCGTGGACGGGGTAGTCTAC GAGCTGCCCACCTACGTGCAGAATGTCGACACCAAGCTGGGTAGGTCCAC GCTGCGGCTGAAGATGCCGCTGAGCGGTTTCTTGGTGAACGGGGAGTCCG TATCGGTGGCGGACCTTGTTGTCGCCTACGGCCTGGAAGTTTCCCGGAAG AATCTCCTGGCTCTCAGAGAGCTTTCCGGAACATCCTCATCTCACCAGAA CGCGTGGGTACAATACACCCGATCGCCGCGGCAGAGATCCTGCACCGTTT TGACGAGGACCACCTCAAGCTACCGCCGAGGAAGGACTCGGAGCCATCGG TGAAATCGCACCAAGATGACGGATGCTGGATCCCGGATTCTCGGCAGGTT CACGTGACCTTCATGGGTACCACCATGGAGATAAGCGTGAAGGCGGGAGA CCTCCGAGCCTTGGACCGACCACTCCAGTGCAAGCTTGCCCTCGACGCTC TTAAGAACGACCCGAAGACGATGGAGGAGCCGCCGCCCCTGGAGTATCTC GAGACAGGCTCCACAGAGGATGGCTCATGCGGGATCGGGATGGAGGCAGG GGCAACGGGCTTTGCGCTCTCACAGTTTGCCGCCGGATGCTCATCGCCCT CGCCAGCCCCGGCGGCTTTTGCTGAAGCTGGTGGCGCCGACGCGTTCAAG ATCAACTATCCCGAGTCGGTGTCGGAGCCCGCCCCGGAAGTGAGGGTGAA CCGGGGCACCCCGACCCGACGCCGGAAGAAAAAGAAGGCCGTAAAGGCCG TGGACGGGGTAGTCTACGAGCTGCCCACCTACGTGCAGAATGTCGACACC AAGCTGGGTAGGTCCACGCTGCGGCTGAAGATGCCGCTGAGCGGTTTCTT GGTGAACGGGGAGTCCGTATCGGTGGCGGACCTTGTTGTCGCCTACGGCC TGGAAGTTTCCCGGAAGAATCTCCTGGCTCTCAGAGCGTGCCGAGAGGCC ATGCTGACAAACTTCGCTGGCCAAGAGTTAGTGAAACGCGCAGTCGCGGC CGAGCTCTTCCATGTCTGGGTCAAGCGAGGGGACGGTCGAGAGAATGAGA GCGCGGAAGCCGAGGCGTCGCCAAGCGACGTGCACGATCCAGTAGAGTCC CCGCAGCAGCGCGCTAACGCCAACACACCACCGTGGTCTCCAGAAAACCC AGACAAGGGATCTTCAAGGGACTCGACCGGGAGGCGTGGGGCAAAGGTGG CTGCAGAGACGGACGATGCTACCAACGGTTCGACCGCCCCCGGCGTGGCT ACTCAGGGGTCGCTTGGTGCAAAGTCGCGCTCCGCTCTCGCCGACGACGT CGTGATTCGGTTCGCTGGTCCCGTGAGTTCTCCGGGGGATAAACGGATTG AGGTGAAAATGATGGTGGGGGAGCTGCGAAGGACCCGCCAGAACCGGTTG GCTGAATACAGGCAGCTCCTCGTGGCGATGCTCAATGACTCCGAAGTGCA GTCTGGGGAGCTGGGCGTTCTTGAGCCATCGGCCCACCCCACGCCCACTC TAACGGAGCAGAACTCGAGCGGGGCGGCTGAGGCTGCTGCTGCGGAGGCG GCGGCAGCAGCGGTAGCATCGCCGAACGATTACAATGGAGAGCCGAGCAC AGTGCCGATGCCTCCTCAGAAACAGCGACCGCACAAGCGATCTCCCGCAG AGTGGTCAGTCAACGAGTCGACGCTGGCTCACGCAGAACGCGGGAAGAGA CCGAGGTACGAAAGGATGCGCGTCGGCGGAGGCATAGACGTCGGCGGAGG ATCAGGGGCCTCGTCCTCATCCTCGGCGGAGGGGATCGAGGCGGGAGCAG CGGCACTCTTAGCTAGTAAGCGTCGACGGCAGCTGTGGATGCTCGCTATC CGCGACAACGAGGTGCGGTACGATCGGCGAAAGGAAGAGGCGCGGAGGGA GTATGAGCTGCGGCAGCAGCAGCTGCTCCGGTGGATGGTCGACGAGGAGG CGGGTCGACACAATGAAAGCGGAGAGGTCGGCCCGCCCCCCGTGGTGGAG ATGGATAGGCGGACCGGGACGTGCACCCCTTAAAGCGTGCCGAGAGGCCA TGCTGACAAACTTCGCTGGCCAAGAGTTAGTGAAACGCGCAGTCGCGGCC GAGCTCTTCCATGTCTGGGTCAAGCGAGGGGACGGTCGAGAGAATGAGAG CGCGGAAGCCGAGGCGTCGCCAAGCGACGTGCACGATCCAGTAGAGTCCC CGCAGCAGCGCGCTAACGCCAACACACCACCGTGGTCTCCAGAAAACCCA GACAAGGGATCTTCAAGGGACTCGACCGGGAGGCGTGGGGCAAAGGTGGC TGCAGAGACGGACGATGCTACCAACGGTTCGACCGCCCCCGGCGTGGCTA CTCAGGGGTCGCTTGGTGCAAAGTCGCGCTCCGCTCTCGCCGACGACGTC GTGATTCGGTTCGCTGGTCCCGTGAGTTCTCCGGGGGATAAACGGATTGA GGTGAAAATGATGGTGGGGGAGCTGCGAAGGACCCGCCAGAACCGGTTGG CTGAATACAGGCAGCTCCTCGTGGCGATGCTCAATGACTCCGAAGTGCAG TCTGGGGAGCTGGGCGTTCTTGAGCCATCGGCCCACCCCACGCCCACTCT AACGGAGCAGAACTCGAGCGGGGCGGCTGAGGCTGCTGCTGCGGAGGCGG CGGCAGCAGCGGTAGCATCGCCGAACGATTACAATGGAGAGCCGAGCACA GTGCCGATGCCTCCTCAGAAACAGCGACCGCACAAGCGATCTCCCGCAGA GTGGTCAGTCAACGAGTCGACGCTGGCTCACGCAGAACGCGGGAAGAGAC CGAGGTACGAAAGGATGCGCGTCGGCGGAGGCATAGACGTCGGCGGAGGA TCAGGGGCCTCGTCCTCATCCTCGGCGGAGGGGATCGAGGCGGGAGCAGC GGCACTCTTAGCTAGTAAGCGTCGACGGCAGCTGTGGATGCTCGCTATCC GCGACAACGAGGTGCGGTACGATCGGCGAAAGGAAGAGGCGCGGAGGGAG TATGAGCTGCGGCAGCAGCAGCTGCTCCGGTGGATGGTCGACGAGGAGGC GGGTCGACACAATGAAAGCGGAGAGGTCGGCCCGCCCCCCGTGGTGGAGA TGGATAGGCGGACCGGGACGTGCACCCCTTAA back to top
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