mRNA_H-elongata_contig129225.2144.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129225.2144.1
Unique NamemRNA_H-elongata_contig129225.2144.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig129225.2144.1 vs. uniprot
Match: UPI001CA7C5E7 (uncharacterized protein LOC122504102 n=1 Tax=Leptopilina heterotoma TaxID=63436 RepID=UPI001CA7C5E7)

HSP 1 Score: 55.1 bits (131), Expect = 5.710e-6
Identity = 32/100 (32.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:  148 RWVADSGCSRFMT----PFADY-IVNYRGGGGVVRIADGQVMPIEGIGNLPMSFWSGKDWVKTILLNVAHVPLLGYNLLSLKMMAARGHKYVGDKKRVTL 432
            RW  DSG +  M+     F +  ++N++     V++ +G ++ ++GIG + +  W+GK+W +T L NV  VP L  NL SL  +  +G     DK++  L
Sbjct:  889 RWWLDSGATEHMSFNQENFVELNVINHKRH---VKVGNGTLLEVKGIGKVKLEAWNGKEWRETELGNVLFVPDLDVNLFSLSAVLDKGFVMQSDKEKCQL 985
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BLAST of mRNA_H-elongata_contig129225.2144.1 vs. uniprot
Match: A0A484L0L8_9ASTE (CCHC-type domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484L0L8_9ASTE)

HSP 1 Score: 53.1 bits (126), Expect = 2.350e-5
Identity = 37/142 (26.06%), Postives = 68/142 (47.89%), Query Frame = 1 
Query:    7 FKCRGWGHEADSCPSKIKIKEEPDVMTV--------HQEPDFEISTKTKHESTVERWVADSGCSRFMTPFADYIVNYRGG-GGVVRIADGQVMPIEGIGNLPMSFWSGKDWVKTILLNVAHVPLLGYNLLSLKMMAARGHKY 405
            +KC   GH    CP K + K + +++          ++  +  +   +  E++   WV DS C   M    +++   + G   ++R+AD   + + G+G + M  + G   V   L NVA+VP L  NL+SL  + + G++Y
Sbjct:  270 YKCGELGHIRRDCPKKREGKNDANLVRDGETGSSLGNESDELFMVANSYDEASGNDWVLDSACVSHMCSRKEHLKTLQEGMTKILRLADNSTVAVMGVGVVKMKMFDG---VVRTLGNVAYVPKLRRNLISLSQLDSEGYEY 408
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129225.2144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001CA7C5E75.710e-632.00uncharacterized protein LOC122504102 n=1 Tax=Lepto... [more]
A0A484L0L8_9ASTE2.350e-526.06CCHC-type domain-containing protein n=1 Tax=Cuscut... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129225contigH-elongata_contig129225:269..787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929768.433043-CDS-H-elongata_contig129225:268..4041622929768.433043-CDS-H-elongata_contig129225:268..404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129225 269..404 +
1691679150.3428934-CDS-H-elongata_contig129225:268..4041691679150.3428934-CDS-H-elongata_contig129225:268..404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129225 269..404 +
1622929768.4492598-CDS-H-elongata_contig129225:491..7871622929768.4492598-CDS-H-elongata_contig129225:491..787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129225 492..787 +
1691679150.3518918-CDS-H-elongata_contig129225:491..7871691679150.3518918-CDS-H-elongata_contig129225:491..787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129225 492..787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129225.2144.1prot_H-elongata_contig129225.2144.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129225 269..787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129225.2144.1

>prot_H-elongata_contig129225.2144.1 ID=prot_H-elongata_contig129225.2144.1|Name=mRNA_H-elongata_contig129225.2144.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
QSFKCRGWGHEADSCPSKIKIKEEPDVMTVHQEPDFEISTKTKHESTVER
WVADSGCSRFMTPFADYIVNYRGGGGVVRIADGQVMPIEGIGNLPMSFWS
GKDWVKTILLNVAHVPLLGYNLLSLKMMAARGHKYVGDKKRVTL
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mRNA from alignment at H-elongata_contig129225:269..787+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129225.2144.1 ID=mRNA_H-elongata_contig129225.2144.1|Name=mRNA_H-elongata_contig129225.2144.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=519bp|location=Sequence derived from alignment at H-elongata_contig129225:269..787+ (Himanthalia elongata Himel1 dioecious)
CAATCTTTCAAGTGTCGGGGATGGGGTCACGAGGCTGATTCGTGCCCATC
CAAGATTAAGATTAAAGAGGAGCCCGATGTTATGACAGTACATCAGGAGC
CCGACTTTGAGATATCGACTAAAACCAAGCATGAAAGTTGAATCGATGGT
GAATACACCACGTGTTTTATGGCCATCGAGGTGGAAAATAATGTTCCCTC
GGTGGGTGAGCTACCGCTGGAAGGTACGGTTGAGCGATGGGTCGCAGATA
GTGGCTGCTCACGTTTCATGACGCCTTTCGCTGACTATATAGTCAACTAT
CGCGGGGGTGGAGGAGTGGTAAGAATTGCCGACGGCCAAGTGATGCCGAT
CGAAGGCATTGGGAATTTACCGATGAGCTTCTGGTCTGGTAAGGATTGGG
TGAAGACAATTTTACTGAATGTCGCTCATGTCCCACTACTGGGGTACAAC
TTGCTGTCACTGAAGATGATGGCTGCTCGTGGTCACAAGTACGTTGGCGA
CAAAAAGCGGGTGACGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig129225:269..787+

>mRNA_H-elongata_contig129225.2144.1 ID=mRNA_H-elongata_contig129225.2144.1|Name=mRNA_H-elongata_contig129225.2144.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig129225:269..787+ (Himanthalia elongata Himel1 dioecious)
CAATCTTTCAAGTGTCGGGGATGGGGTCACGAGGCTGATTCGTGCCCATC
CAAGATTAAGATTAAAGAGGAGCCCGATGTTATGACAGTACATCAGGAGC
CCGACTTTGAGATATCGACTAAAACCAAGCATGAAACAATCTTTCAAGTG
TCGGGGATGGGGTCACGAGGCTGATTCGTGCCCATCCAAGATTAAGATTA
AAGAGGAGCCCGATGTTATGACAGTACATCAGGAGCCCGACTTTGAGATA
TCGACTAAAACCAAGCATGAAAGTACGGTTGAGCGATGGGTCGCAGATAG
TGGCTGCTCACGTTTCATGACGCCTTTCGCTGACTATATAGTCAACTATC
GCGGGGGTGGAGGAGTGGTAAGAATTGCCGACGGCCAAGTGATGCCGATC
GAAGGCATTGGGAATTTACCGATGAGCTTCTGGTCTGGTAAGGATTGGGT
GAAGACAATTTTACTGAATGTCGCTCATGTCCCACTACTGGGGTACAACT
TGCTGTCACTGAAGATGATGGCTGCTCGTGGTCACAAGTACGTTGGCGAC
AAAAAGCGGGTGACGTTGGTACGGTTGAGCGATGGGTCGCAGATAGTGGC
TGCTCACGTTTCATGACGCCTTTCGCTGACTATATAGTCAACTATCGCGG
GGGTGGAGGAGTGGTAAGAATTGCCGACGGCCAAGTGATGCCGATCGAAG
GCATTGGGAATTTACCGATGAGCTTCTGGTCTGGTAAGGATTGGGTGAAG
ACAATTTTACTGAATGTCGCTCATGTCCCACTACTGGGGTACAACTTGCT
GTCACTGAAGATGATGGCTGCTCGTGGTCACAAGTACGTTGGCGACAAAA
AGCGGGTGACGTTG
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