prot_H-elongata_contig129190.2143.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig129190.2143.1
Unique Name	prot_H-elongata_contig129190.2143.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	213

Homology

[Close]

BLAST of mRNA_H-elongata_contig129190.2143.1 vs. uniprot
Match: D7G2U2_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U2_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 6.790e-53
Identity = 115/239 (48.12%), Postives = 142/239 (59.41%), Query Frame = 0

Query:    1 LLCLLESVPREPVYVAWPF------STPGTESVGDAGGTDYDSGSVARSVLISPNRQPMPPLLKGFAALLRSLAVTEWLAGSLTLLMRWAHSRETRSGGGQQNPSSWWGKMLLTGSGRSVVERLMKLHRHVLMEVSRARADHQHWVESLEAAD------VEGDENSPVQHHRPS--------------PCMPWPEPDFYKLLIVAHNGAAVGSGLDMEGSVPAHTLEFGTVVVAYERLA 213
            +L LLE +PREPVYVAWP        T                     S    PN   +PPLLK  + LLR LA TEWLAG+LTLL RWAHSR  ++  GQQ  +S WG +L++GSGR V+ERLM+LHR+V ME SRA+A+HQ W+ +LEAA+       EG E +                      P MPWPEPDF+++ +VA +GA VGSGLD +GSV  HT+E GTVVVAYER A
Sbjct:    1 MLGLLECIPREPVYVAWPVLPAEEDGTXXXXXXXXXXXXXXXXXXXXGSRSAPPNE--LPPLLKAMSGLLRCLAATEWLAGALTLLTRWAHSRGAQTAAGQQ-AASRWGAILVSGSGRRVLERLMRLHRNVFMEFSRAKAEHQTWLRTLEAANQTAPPSAEGKEQTTDXXXXXXXXXXXXXXXXXXCPPEMPWPEPDFFRINVVAQDGALVGSGLDSDGSVAVHTVECGTVVVAYERAA 236

[Close]

BLAST of mRNA_H-elongata_contig129190.2143.1 vs. uniprot
Match: A0A6H5LD86_9PHAE (DUF913 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD86_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.620e-25
Identity = 66/138 (47.83%), Postives = 86/138 (62.32%), Query Frame = 0

Query:    1 LLCLLESVPREPVYVAWPFSTPGTESVGDAGGTDY---------DSGSVARSVLISPNRQPMPPLLKGFAALLRSLAVTEWLAGSLTLLMRWAHSRETRSGGGQQNPSSWWGKMLLTGSGRSVVERLMKLHRHVLMEV 129
            +L +LE +PREPVYVAWP      +   D+               S S  RS   +P    +PPLLK  + LLR L  TEWLAG+LTLL RWAHSR  ++  GQQ  +S WG +L++GSGR V+ERLM+LHR+VL+E+
Sbjct:  670 MLGVLECIPREPVYVAWPVLPAEEDETADSXXXXXXXXXXKGHSSSSSGPRSA--APTE--LPPLLKAMSGLLRCLTATEWLAGALTLLTRWAHSRGAQTAAGQQ-AASRWGAILVSGSGRRVLERLMRLHRNVLVEI 802

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig129190.2143.1 vs. uniprot

BLAST of mRNA_H-elongata_contig129190.2143.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G2U2_ECTSI	6.790e-53	48.12	UBA domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5LD86_9PHAE	3.620e-25	47.83	DUF913 domain-containing protein n=1 Tax=Ectocarpu...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 82..213
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 60..81
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..59

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig129190	contig	H-elongata_contig129190:395..1436 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig129190.2143.1	mRNA_H-elongata_contig129190.2143.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig129190 395..1436 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig129190.2143.1 ID=prot_H-elongata_contig129190.2143.1|Name=mRNA_H-elongata_contig129190.2143.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=213bp
LLCLLESVPREPVYVAWPFSTPGTESVGDAGGTDYDSGSVARSVLISPNR
QPMPPLLKGFAALLRSLAVTEWLAGSLTLLMRWAHSRETRSGGGQQNPSS
WWGKMLLTGSGRSVVERLMKLHRHVLMEVSRARADHQHWVESLEAADVEG
DENSPVQHHRPSPCMPWPEPDFYKLLIVAHNGAAVGSGLDMEGSVPAHTL
EFGTVVVAYERLA