mRNA_H-elongata_contig129180.2142.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129180.2142.1
Unique NamemRNA_H-elongata_contig129180.2142.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig129180.2142.1 vs. uniprot
Match: A0A6H5J745_9PHAE (MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J745_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.480e-11
Identity = 46/114 (40.35%), Postives = 62/114 (54.39%), Query Frame = -3 
Query:    2 PKSSSLTAGAFLLCLG---LMPCARRAMFAVAKESISVATLPTIETGEVFSVEWDFLTDSEVSGTTGDLHPFEIELRWCGGESV---DCGSSE-CGSSYLSLCKREGG--CMDS 316
            PK  +  + +  LC G   L+P A   + A+ + +   A    +  G   +V W + TD+   GTTGDL PFEIELR CGG+     +CG  E CG+ YL+LC  E G  CMDS
Sbjct:   45 PKVVTTCSPSAALCCGILLLLPTAITRVAALTEITNVAAPRSNLTAGTYHTVGWVYSTDTGAWGTTGDLRPFEIELRSCGGDDAQQAECGLGELCGNEYLALCDLERGAACMDS 158
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129180.2142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J745_9PHAE1.480e-1140.35MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CC... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129180contigH-elongata_contig129180:600..1019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129180.2142.1prot_H-elongata_contig129180.2142.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129180 608..928 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929768.2507207-UTR-H-elongata_contig129180:599..6071622929768.2507207-UTR-H-elongata_contig129180:599..607Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129180 600..607 +
1691679150.2936814-UTR-H-elongata_contig129180:599..6071691679150.2936814-UTR-H-elongata_contig129180:599..607Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129180 600..607 +
1622929768.2827382-UTR-H-elongata_contig129180:928..10191622929768.2827382-UTR-H-elongata_contig129180:928..1019Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129180 929..1019 +
1691679150.3114321-UTR-H-elongata_contig129180:928..10191691679150.3114321-UTR-H-elongata_contig129180:928..1019Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129180 929..1019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929768.263933-CDS-H-elongata_contig129180:607..9281622929768.263933-CDS-H-elongata_contig129180:607..928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129180 608..928 +
1691679150.3028772-CDS-H-elongata_contig129180:607..9281691679150.3028772-CDS-H-elongata_contig129180:607..928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129180 608..928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129180.2142.1

>prot_H-elongata_contig129180.2142.1 ID=prot_H-elongata_contig129180.2142.1|Name=mRNA_H-elongata_contig129180.2142.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MQPPSLLHSERYELPHSELPQSTLSPPHQRSSISNGCKSPVVPDTSESVR
KSHSTEKTSPVSMVGSVATDIDSLATANIARRAHGINPRHNRNAPAVKEL
LLGLAP*
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mRNA from alignment at H-elongata_contig129180:600..1019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129180.2142.1 ID=mRNA_H-elongata_contig129180.2142.1|Name=mRNA_H-elongata_contig129180.2142.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig129180:600..1019+ (Himanthalia elongata Himel1 dioecious)
CCGAGTCCATGCAGCCGCCTTCCCTTTTACACAGCGAGAGGTATGAACTC
CCGCACTCAGAGCTTCCGCAGTCAACACTTTCGCCTCCACACCAACGGAG
CTCGATCTCAAACGGATGTAAATCGCCAGTGGTTCCTGACACTTCAGAGT
CTGTTAGAAAATCCCACTCAACGGAGAAGACTTCACCCGTTTCGATGGTG
GGTAGCGTGGCAACGGATATTGACTCCTTAGCGACGGCAAACATCGCGCG
CCGTGCACACGGCATCAACCCCAGACACAACAGAAACGCGCCAGCTGTCA
AGGAGCTGCTTTTAGGGTTAGCTCCATAATAACTTGGACGTTTCCGCCTG
AAGCCTGTTGATCTTCGAATACAGGATGTACTCCGTCTTCGAACGGTGGA
TGGCTCGGGTGCGTGTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig129180:600..1019+

>mRNA_H-elongata_contig129180.2142.1 ID=mRNA_H-elongata_contig129180.2142.1|Name=mRNA_H-elongata_contig129180.2142.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig129180:600..1019+ (Himanthalia elongata Himel1 dioecious)
ATGCAGCCGCCTTCCCTTTTACACAGCGAGAGGTATGAACTCCCGCACTC
AGAGCTTCCGCAGTCAACACTTTCGCCTCCACACCAACGGAGCTCGATCT
CAAACGGATGTAAATCGCCAGTGGTTCCTGACACTTCAGAGTCTGTTAGA
AAATCCCACTCAACGGAGAAGACTTCACCCGTTTCGATGGTGGGTAGCGT
GGCAACGGATATTGACTCCTTAGCGACGGCAAACATCGCGCGCCGTGCAC
ACGGCATCAACCCCAGACACAACAGAAACGCGCCAGCTGTCAAGGAGCTG
CTTTTAGGGTTAGCTCCATAAATGCAGCCGCCTTCCCTTTTACACAGCGA
GAGGTATGAACTCCCGCACTCAGAGCTTCCGCAGTCAACACTTTCGCCTC
CACACCAACGGAGCTCGATCTCAAACGGATGTAAATCGCCAGTGGTTCCT
GACACTTCAGAGTCTGTTAGAAAATCCCACTCAACGGAGAAGACTTCACC
CGTTTCGATGGTGGGTAGCGTGGCAACGGATATTGACTCCTTAGCGACGG
CAAACATCGCGCGCCGTGCACACGGCATCAACCCCAGACACAACAGAAAC
GCGCCAGCTGTCAAGGAGCTGCTTTTAGGGTTAGCTCCATAA
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