prot_H-elongata_contig12914.2140.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig12914.2140.1
Unique Name	prot_H-elongata_contig12914.2140.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	281

Homology

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BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: A0A6H5KKY5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKY5_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 9.050e-51
Identity = 87/153 (56.86%), Postives = 109/153 (71.24%), Query Frame = 0

Query:  130 FWSRPMEGMFTGEWALKRQIEGAIPTAPPEARWTH-LPMDLNLSHPWSQSEAKAFTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKEKLLRSKRQAACWVCGSGGDLICCDGCEGVYHVECAHLPQVPEGDWFCATCM 281
            FW RP++ +  GE ALKRQ++G + + PP AR    L  DLNL+ PW   EA  +TR M+E G+K+F+  Q K+ P RQ+CELVDRYY GWKQT+GY+ LKE +  SK+Q+AC  C +GGDLICCDGCE VYH EC  L  VPEGDWFC  C+
Sbjct:  820 FWCRPLKSLAGGESALKRQVQGGVSSIPPGARSKDKLSPDLNLARPWLPHEAAMYTRAMLEEGSKNFYAAQ-KALPGRQVCELVDRYYGGWKQTDGYRALKESIRLSKKQSACGGCHAGGDLICCDGCEAVYHPECVGLSVVPEGDWFCPACV 971

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BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: A0A7S4D894_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D894_HETAK)

HSP 1 Score: 99.4 bits (246), Expect = 4.660e-22
Identity = 52/119 (43.70%), Postives = 70/119 (58.82%), Query Frame = 0

Query:  169 LNLSHPWSQSEAKAFTRVMVENGTKDFHVVQQKSFP---DRQICELVDRYYAGWKQTEGYQQLKEKLL--RSKRQAACWVCGSGGDLICCDGCEGVYHVECAHLP--QVPEGDWFCATC 280
            L    PW  +EA AF R   E+  KD H V++       +R I EL+D YY  +K+TE Y+ LK++L+  R      C +C  GGDLICC+ C+ VYH+EC   P   +PEGDW+C TC
Sbjct:   12 LKRPRPWRDAEAAAFERACAEH-LKDLHRVRRAMSAAGFERSISELMDYYYNKFKKTERYKILKKELIKFRELNNDHCAICNDGGDLICCEACDDVYHMECLDPPLSALPEGDWYCPTC 129

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BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: A0A7S1C3G3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3G3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.140e-13
Identity = 49/127 (38.58%), Postives = 62/127 (48.82%), Query Frame = 0

Query:  158 PEARWTHLPMDLNLSHPWSQSEAKAFTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKEKLLRSKR--QAACWVCGSGGDLICCDGCEGVYHVECAHLP--QVPEGDWFCATC 280
            PEAR    P  + L+  WS +E+  F   +   G K F +V     P R   E V+ +Y  WK+   + Q K  L RS       C VCGSGGDL+CCD C   +HV C   P   +PE DW C  C
Sbjct:   45 PEARSNVPPPPVRLARQWSAAESALFELGLGRYG-KFFGLVAM-DIPHRTARECVEYFYGVWKKLPRHSQWKRGLGRSLEFHDDVCAVCGSGGDLLCCDSCSLAFHVSCLRPPLFDLPEEDWACPRC 169

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BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: D0NYY2_PHYIT (PHD-type domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NYY2_PHYIT)

HSP 1 Score: 76.6 bits (187), Expect = 8.090e-13
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 0

Query:  183 FTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKE-----------KLLRSKRQAA------CWVCGSGGDLICCDGCEGVYHVECAH--LPQVPEGDWFCATC 280
            F R M  +G K FH+V+++ FP+    ELV ++Y  WK+   Y++  +           K +  +R AA      C +C  GG L+CCDGCE  YH+ C    L  VPEGDWFC+ C
Sbjct:  118 FERAMDRHGKK-FHLVKRR-FPNVATRELVSKFYL-WKKAPEYEKWHDGQREKKRKREAKRIAQQRPAADQHLEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHC 231

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BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: W2PKE7_PHYPN (PHD-type domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=W2PKE7_PHYPN)

HSP 1 Score: 77.8 bits (190), Expect = 1.360e-12
Identity = 46/117 (39.32%), Postives = 63/117 (53.85%), Query Frame = 0

Query:  183 FTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKE-----------KLLRSKRQAA------CWVCGSGGDLICCDGCEGVYHVECAH--LPQVPEGDWFCATC 280
            F R M  +G K FH+V+++ FP     ELV ++Y  WK+T  Y++  +           K +  +R AA      C +C  GG L+CCDGCE  YH+ C    L  VPEGDWFC+ C
Sbjct:  110 FERAMDRHGKK-FHLVKRR-FPTVATRELVSKFYL-WKKTPEYEKWHDGQREKKRKREAKRIAQQRPAADQHMEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHC 223

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BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: A0A833WH57_PHYIN (Pleckstrin homology domain-containing proteinD n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WH57_PHYIN)

HSP 1 Score: 76.6 bits (187), Expect = 2.460e-12
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 0

Query:  183 FTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKE-----------KLLRSKRQAA------CWVCGSGGDLICCDGCEGVYHVECAH--LPQVPEGDWFCATC 280
            F R M  +G K FH+V+++ FP+    ELV ++Y  WK+   Y++  +           K +  +R AA      C +C  GG L+CCDGCE  YH+ C    L  VPEGDWFC+ C
Sbjct:   43 FERAMDRHGKK-FHLVKRR-FPNVATRELVSKFYL-WKKAPEYEKWHDGQREKKRKREAKRIAQQRPAADQHLEFCGICLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHC 156

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BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: G4YQJ2_PHYSP (PHD-type domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YQJ2_PHYSP)

HSP 1 Score: 74.7 bits (182), Expect = 3.480e-12
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 0

Query:  183 FTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKEKLLRSKR-----------------QAACWVCGSGGDLICCDGCEGVYHVECAH--LPQVPEGDWFCATC 280
            F + M  +G K FH+V+++        ELV ++Y  WK+T  Y+Q  E+    KR                 +  C +C  GG L+CCDGCE  YH+ C    L  VPEGDWFC  C
Sbjct:  121 FEKAMDRHGKK-FHLVKRRLGRQVTTRELVSKFYL-WKKTPEYEQWHERQREKKRAREAKRMARMRPAADQHREYCEMCLKGGKLLCCDGCERAYHLNCVRPSLLDVPEGDWFCPYC 235

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BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: A0A6A3MM28_9STRA (PHD-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MM28_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.860e-12
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 0

Query:  183 FTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKEKLLRSKRQAA-----------------CWVCGSGGDLICCDGCEGVYHVECAH--LPQVPEGDWFCATC 280
            F + M  +G K FH+V+++        ELV ++Y  WK+T  Y+Q  E+    KR                    C +C  GG L+CCDGCE  YH+ C    L  VPEGDWFC+ C
Sbjct:  108 FEKAMDRHGKK-FHLVKRRLGRQVTTRELVSKFYM-WKKTPEYEQWHERQREKKRSREAKRLARLRPAADQHREYCEMCLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHC 222

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BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: A0A6G0SHC3_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6G0SHC3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.160e-11
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 0

Query:  183 FTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKEKLLRSKRQAA-----------------CWVCGSGGDLICCDGCEGVYHVECAH--LPQVPEGDWFCATC 280
            F + M  +G K FH+V+++        ELV ++Y  WK+T  Y+Q  E+    KR                    C +C  GG L+CCDGCE  YH+ C    L  VPEGDWFC+ C
Sbjct:  108 FEKAMDRHGKK-FHLVKRRLGRQVTTRELVSKFYM-WKKTPEYEQWHERQREKKRSREAKRLARLRPAADQHREYCEMCLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHC 222

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BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Match: A0A329S0Z3_9STRA (PHD-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S0Z3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.510e-11
Identity = 45/117 (38.46%), Postives = 62/117 (52.99%), Query Frame = 0

Query:  183 FTRVMVENGTKDFHVVQQKSFPDRQICELVDRYYAGWKQTEGYQQLKE-----------KLLRSKRQAA------CWVCGSGGDLICCDGCEGVYHVECAH--LPQVPEGDWFCATC 280
            F R M  +G K FH+++++ FP     ELV ++Y  WK+   Y++  +           K +  +R AA      C VC  GG L+CCDGCE  YH+ C    L  VPEGDWFC+ C
Sbjct:  110 FERAMDRHGKK-FHLLKRR-FPTVGTRELVSKFYL-WKKAPEYEKWHDGQREKKRKREAKRIAQQRPAADQHLEFCGVCLKGGKLLCCDGCERAYHLNCVRPALLDVPEGDWFCSHC 223

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot

BLAST of mRNA_H-elongata_contig12914.2140.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KKY5_9PHAE	9.050e-51	56.86	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7S4D894_HETAK	4.660e-22	43.70	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A7S1C3G3_9STRA	3.140e-13	38.58	Hypothetical protein (Fragment) n=1 Tax=Bicosoecid...	[more]
D0NYY2_PHYIT	8.090e-13	38.46	PHD-type domain-containing protein n=1 Tax=Phytoph...	[more]
W2PKE7_PHYPN	1.360e-12	39.32	PHD-type domain-containing protein n=19 Tax=Phytop...	[more]
A0A833WH57_PHYIN	2.460e-12	38.46	Pleckstrin homology domain-containing proteinD n=1...	[more]
G4YQJ2_PHYSP	3.480e-12	36.75	PHD-type domain-containing protein (Fragment) n=1 ...	[more]
A0A6A3MM28_9STRA	8.860e-12	36.75	PHD-type domain-containing protein n=3 Tax=Phytoph...	[more]
A0A6G0SHC3_9STRA	1.160e-11	36.75	Uncharacterized protein n=4 Tax=Phytophthora TaxID...	[more]
A0A329S0Z3_9STRA	1.510e-11	38.46	PHD-type domain-containing protein n=2 Tax=Phytoph...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001965	Zinc finger, PHD-type	SMART	SM00249	PHD_3	coord: 240..281 e-value: 3.6E-10 score: 49.8
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 234..281 e-value: 2.9E-14 score: 54.5
IPR019787	Zinc finger, PHD-finger	PFAM	PF00628	PHD	coord: 241..281 e-value: 4.4E-7 score: 29.7
IPR019787	Zinc finger, PHD-finger	PROSITE	PS50016	ZF_PHD_2	coord: 238..281 score: 9.953
None	No IPR available	GENE3D	1.10.10.60		coord: 170..233 e-value: 6.6E-10 score: 40.7
IPR042163	PHD finger protein 12	PANTHER	PTHR46309	FAMILY NOT NAMED	coord: 218..280
IPR019786	Zinc finger, PHD-type, conserved site	PROSITE	PS01359	ZF_PHD_1	coord: 241..280
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 235..281
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 173..223

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig12914	contig	H-elongata_contig12914:5408..7305 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig12914.2140.1	mRNA_H-elongata_contig12914.2140.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig12914 5408..7317 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig12914.2140.1 ID=prot_H-elongata_contig12914.2140.1|Name=mRNA_H-elongata_contig12914.2140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=281bp
MLYRCGGDYYQARLKLLHMLRLWNAQFPNAMTGTKNLASARATAEKESAR
RIAEWRAIAGPKAEALPDLSKESPEDPEPEYLTRVTHWSKGEMMVSSKTA
AIVVHDANGCGGGGAVSGQKVWTTADEKEFWSRPMEGMFTGEWALKRQIE
GAIPTAPPEARWTHLPMDLNLSHPWSQSEAKAFTRVMVENGTKDFHVVQQ
KSFPDRQICELVDRYYAGWKQTEGYQQLKEKLLRSKRQAACWVCGSGGDL
ICCDGCEGVYHVECAHLPQVPEGDWFCATCM

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001965	Znf_PHD
IPR013083	Znf_RING/FYVE/PHD
IPR019787	Znf_PHD-finger
IPR042163	PHF12
IPR019786	Zinc_finger_PHD-type_CS
IPR011011	Znf_FYVE_PHD
IPR009057	Homeobox-like_sf