mRNA_H-elongata_contig102431.214.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102431.214.1
Unique NamemRNA_H-elongata_contig102431.214.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102431.214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102431contigH-elongata_contig102431:1754..2077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_004690.1
Exons1
Model size324
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.4251971-CDS-H-elongata_contig102431:1753..20771622929562.4251971-CDS-H-elongata_contig102431:1753..2077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102431 1754..2077 +
1691679071.3985195-CDS-H-elongata_contig102431:1753..20771691679071.3985195-CDS-H-elongata_contig102431:1753..2077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102431 1754..2077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102431.214.1prot_H-elongata_contig102431.214.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102431 1754..2077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102431.214.1

>prot_H-elongata_contig102431.214.1 ID=prot_H-elongata_contig102431.214.1|Name=mRNA_H-elongata_contig102431.214.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
WRITGVVDTHTNCSGWAAKGKPAALQGIVADAMRDNPQLSGVDIKRKLER
TGLKVADRTATRMKNVAKKAHQAALAGSYQQFPSLCALLQQRSPGTVAEV
EVSRSID*
back to top

mRNA from alignment at H-elongata_contig102431:1754..2077+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102431.214.1 ID=mRNA_H-elongata_contig102431.214.1|Name=mRNA_H-elongata_contig102431.214.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig102431:1754..2077+ (Himanthalia elongata Himel1 dioecious)
TGGCGGATCACGGGTGTAGTGGACACACACACCAACTGTTCCGGTTGGGC
GGCGAAGGGGAAGCCGGCTGCCCTACAGGGCATAGTCGCTGACGCCATGA
GGGACAACCCTCAGCTATCGGGTGTGGATATCAAGCGCAAGCTAGAGAGG
ACGGGACTTAAAGTGGCGGACCGCACAGCCACAAGAATGAAGAACGTCGC
AAAGAAGGCACACCAGGCGGCGTTGGCTGGGTCATACCAGCAATTCCCTT
CTCTCTGCGCGCTGCTTCAGCAGAGGTCCCCAGGAACCGTCGCCGAAGTA
GAAGTGAGCAGGAGTATAGACTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig102431:1754..2077+

>mRNA_H-elongata_contig102431.214.1 ID=mRNA_H-elongata_contig102431.214.1|Name=mRNA_H-elongata_contig102431.214.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig102431:1754..2077+ (Himanthalia elongata Himel1 dioecious)
TGGCGGATCACGGGTGTAGTGGACACACACACCAACTGTTCCGGTTGGGC
GGCGAAGGGGAAGCCGGCTGCCCTACAGGGCATAGTCGCTGACGCCATGA
GGGACAACCCTCAGCTATCGGGTGTGGATATCAAGCGCAAGCTAGAGAGG
ACGGGACTTAAAGTGGCGGACCGCACAGCCACAAGAATGAAGAACGTCGC
AAAGAAGGCACACCAGGCGGCGTTGGCTGGGTCATACCAGCAATTCCCTT
CTCTCTGCGCGCTGCTTCAGCAGAGGTCCCCAGGAACCGTCGCCGAAGTA
GAAGTGAGCAGGAGTATAGACTAATGGCGGATCACGGGTGTAGTGGACAC
ACACACCAACTGTTCCGGTTGGGCGGCGAAGGGGAAGCCGGCTGCCCTAC
AGGGCATAGTCGCTGACGCCATGAGGGACAACCCTCAGCTATCGGGTGTG
GATATCAAGCGCAAGCTAGAGAGGACGGGACTTAAAGTGGCGGACCGCAC
AGCCACAAGAATGAAGAACGTCGCAAAGAAGGCACACCAGGCGGCGTTGG
CTGGGTCATACCAGCAATTCCCTTCTCTCTGCGCGCTGCTTCAGCAGAGG
TCCCCAGGAACCGTCGCCGAAGTAGAAGTGAGCAGGAGTATAGACTAA
back to top