mRNA_H-elongata_contig12911.2139.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12911.2139.1 vs. uniprot
Match: R7QRG3_CHOCR (Cellulase n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QRG3_CHOCR) HSP 1 Score: 156 bits (394), Expect = 3.760e-44 Identity = 78/167 (46.71%), Postives = 104/167 (62.28%), Query Frame = 1
Query: 1 YYETTGESVIFGLGSYGSEEDGKLGKCYRFKIDTGANDIIAQVTNFGSDVAANQFDMQMGGGGFGVWNACADQTYHVVSTEEYTNSDDWPCEQETIEDISVSPLYSYGEESWGNRCGGQKYVEDCSNLPEYPTTLGDVP------DGEPTLIELCKTAFDWNVGVRI 483
Y + TG+ V+FG+GSYG++ + +GKCY+F ++ IIAQVTN+G++++ NQFDMQMGGGGFGVWNAC+ T + T SD+ PC DI+V P + G+ WG RCGG Y C +LP++P TL P EP L LCK +FDW G RI
Sbjct: 57 YKQQTGQDVLFGVGSYGAQNNLNIGKCYKFNLNPPTKPIIAQVTNWGAEISTNQFDMQMGGGGFGVWNACSGPT-------DKTASDNRPCNTNDYLDIAVRPQFVSGKSEWGRRCGGHIYRTGCRSLPKWPATLEYRPRPAGSSTNEPNLRTLCKRSFDW--GARI 214
BLAST of mRNA_H-elongata_contig12911.2139.1 vs. uniprot
Match: A0A2V3ID67_9FLOR (Cellulase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID67_9FLOR) HSP 1 Score: 114 bits (284), Expect = 1.040e-27 Identity = 66/165 (40.00%), Postives = 93/165 (56.36%), Query Frame = 1
Query: 19 ESVIFGLGSYGSEEDGKLGKCYRFKIDT--GANDIIAQVTNFGSDVAANQFDMQMGGGGFGVWNACADQTYHVVSTEEYTNSDDWPCEQETIEDISVSPLYSYG--EESWGNRCGGQKYVEDCSNLPEYPTTLGDVPD----------GEPTLIELCKTAFDWNV 471
E++ FG+GSYGS G LGKC++F +DT + ++ QVTN G D+ NQ DMQMG GGFG++N CA T N D C ++ + D V+ G +++G RCGGQK E CS +PE P+ +G + EP+L+ +C+ AFDW V
Sbjct: 60 ENIFFGMGSYGSGT-GNLGKCFKFYLDTLGSSTAVVFQVTNEGVDIRNNQVDMQMGAGGFGIFNVCAGPT-------NKNNGD--ACARDVVTDNIVAYPQFDGTPHDAFGERCGGQKTREQCSYVPEQPSQIGQPGEIQQRPVFQNVREPSLVTMCQRAFDWQV 214
BLAST of mRNA_H-elongata_contig12911.2139.1 vs. uniprot
Match: A0A7S4WF25_9DINO (Cellulase n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4WF25_9DINO) HSP 1 Score: 91.7 bits (226), Expect = 1.290e-18 Identity = 57/165 (34.55%), Postives = 81/165 (49.09%), Query Frame = 1
Query: 1 YYETTGESVIFGLGSYG--SEEDGK--LGKCYRFKIDTGANDIIAQVTNFGSDVAANQFDMQMGGGGFGVWNACADQTYHVVSTEEYTNSDDWPCEQETIEDISVSPLYSYGEESWGNRCGGQKYVEDCSNLPEYPTTLGDVPDGEPTLIELCKTAFDWNVGVRI 483
+++ TGE V FG+G++G E D + LG CYR ++ A I+AQ N GSDVA NQFD+Q+G GG G++N C T S ++ G +WG + GG C+ LP YP + + TL LC+ + W+ GVRI
Sbjct: 223 FHDETGEDVFFGVGTFGVSKEADAQQGLGACYRMLVEGVAKPIVAQAINTGSDVAGNQFDLQIGAGGAGIFNTCVGGT---------------------------SSMFPGGLAAWGCQYGGVDSRSACAALPMYPRSEQPMRAAGDTLPALCE--YSWDQGVRI 358
BLAST of mRNA_H-elongata_contig12911.2139.1 vs. uniprot
Match: A0A0W0YUL1_9GAMM (Cellulase n=4 Tax=Legionella sainthelensi TaxID=28087 RepID=A0A0W0YUL1_9GAMM) HSP 1 Score: 88.2 bits (217), Expect = 1.200e-17 Identity = 60/157 (38.22%), Postives = 79/157 (50.32%), Query Frame = 1
Query: 13 TGESVIFGLGSYGSE-----EDGKLGKCYRFKIDTGANDIIAQVTNFGSDVA-ANQFDMQMGGGGFGVWNACADQTYHVVSTEEYTNSDDWPCEQETIEDISVSPLYSYGEESWGNRCGGQKYVEDCSNLPEYPTTLGDVPDGEPTLIE-LCKTAFD 462
TG+ V FG+G++ E D LG C+R G DIIAQV N G D+ NQFD+QMG GG G +NACA D ++S +YS + +WG GG + DCSNLPEYPT + +G+ ++ LCK FD
Sbjct: 64 TGQDVHFGVGTFMGEGDQVGTDKHLGSCFRLVFTDGQKDIIAQVVNTGYDMNNPNQFDLQMGAGGMGAFNACAG-------------------------DPNIS-MYSGNKFAWGLVYGGIQNEIDCSNLPEYPTVINS--NGQTNNLQMLCKYGFD 192
BLAST of mRNA_H-elongata_contig12911.2139.1 vs. uniprot
Match: UPI001244C0C4 (endoglucanase n=1 Tax=Legionella longbeachae TaxID=450 RepID=UPI001244C0C4) HSP 1 Score: 85.9 bits (211), Expect = 8.320e-17 Identity = 56/157 (35.67%), Postives = 78/157 (49.68%), Query Frame = 1
Query: 13 TGESVIFGLGSYGSE-----EDGKLGKCYRFKIDTGANDIIAQVTNFGSDVA-ANQFDMQMGGGGFGVWNACADQTYHVVSTEEYTNSDDWPCEQETIEDISVSPLYSYGEESWGNRCGGQKYVEDCSNLPEYPTTLGDVPDGEPTLIE-LCKTAFD 462
TG+ V FG+G++ E D LG C+R G D+IAQV N G D+ NQFD+QMG GG G +NAC + D+++S +YS + WG GG + DCSNLP+YP + +G+ ++ LCK FD
Sbjct: 64 TGQDVHFGVGTFMGEGDQVGTDKHLGSCFRLVFSDGQKDLIAQVVNTGYDMNNPNQFDLQMGAGGMGAFNAC-------------------------VGDLNIS-MYSGSKSQWGLVYGGIQNEVDCSNLPKYPMVVSS--NGQTNDLQMLCKYGFD 192
BLAST of mRNA_H-elongata_contig12911.2139.1 vs. uniprot
Match: A0A378IH44_9GAMM (Cellulase n=3 Tax=Legionella TaxID=445 RepID=A0A378IH44_9GAMM) HSP 1 Score: 83.2 bits (204), Expect = 7.920e-16 Identity = 57/157 (36.31%), Postives = 75/157 (47.77%), Query Frame = 1
Query: 13 TGESVIFGLGSYGSE-----EDGKLGKCYRFKIDTGANDIIAQVTNFGSDVA-ANQFDMQMGGGGFGVWNACADQTYHVVSTEEYTNSDDWPCEQETIEDISVSPLYSYGEESWGNRCGGQKYVEDCSNLPEYPTTLGDVPDGEPTLIE-LCKTAFD 462
TG+ V FG+G++ E D LG C+R DIIAQV N G D+ NQFD+QMG GG G +NAC + D +S +YS + WG GG + DCSNLPEYP + +G+ ++ LCK FD
Sbjct: 64 TGQDVHFGVGTFMGEGDQVGTDKHLGSCFRLVFKDDQKDIIAQVVNTGYDMNNPNQFDLQMGAGGMGAFNAC-------------------------VGDPKIS-MYSGSKSQWGLVYGGIQNEVDCSNLPEYPMVVSS--NGQTNNLQMLCKYGFD 192
BLAST of mRNA_H-elongata_contig12911.2139.1 vs. uniprot
Match: A0A7S0A4L0_9DINO (Cellulase n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A4L0_9DINO) HSP 1 Score: 81.6 bits (200), Expect = 3.860e-15 Identity = 52/154 (33.77%), Postives = 74/154 (48.05%), Query Frame = 1
Query: 25 VIFGLGSYG----SEEDGKLGKCYRFKIDTGANDIIAQVTNFGSDVAANQFDMQMGGGGFGVWNACADQTYHVVSTEEYTNSDDWPCEQETIEDISVSPLYSYGEES-WGNRCGGQKYVEDCSNLPEYPTTLGDVPDGEPTLIELCKTAFDWNV 471
V FG+G+YG + G LG+C + + +IIAQ N G DV+ NQFD+QMG GG G++N CA +D S+ P G +S WG++ GG + C++LP YP + L+ LC+ AFD V
Sbjct: 186 VYFGVGTYGVDLGKDPMGGLGQCVQIHVKGLEREIIAQSINTGHDVSVNQFDLQMGAGGVGLFNTCAG------------------------DDFSMYP----GPKSVWGHQYGGLDHKSQCADLPPYPRDSAPMKAAGDNLVNLCEYAFDKGV 311
BLAST of mRNA_H-elongata_contig12911.2139.1 vs. uniprot
Match: A0A1Y2ACG3_9FUNG (Cellulase n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2ACG3_9FUNG) HSP 1 Score: 56.6 bits (135), Expect = 2.210e-6 Identity = 33/92 (35.87%), Postives = 43/92 (46.74%), Query Frame = 1
Query: 115 IIAQVTNFGSDVAANQFDMQMGGGGFGVWNACADQTYHVVSTEEYTNSDDWPCEQETIEDISVSPLYSYGEESWGNRCGGQKYVEDCSNLPE 390
I+ QVTN GSDV +NQFD+Q+ GGG G+++AC TN P G WG + GG +EDC + PE
Sbjct: 369 IVVQVTNTGSDVGSNQFDLQIPGGGVGIFDAC-------------TNMYGLPA----------------GSNGWGKKYGGISSIEDCDSFPE 431
BLAST of mRNA_H-elongata_contig12911.2139.1 vs. uniprot
Match: A0A1Y2BF31_9FUNG (Cellulase n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2BF31_9FUNG) HSP 1 Score: 55.8 bits (133), Expect = 4.090e-6 Identity = 32/92 (34.78%), Postives = 43/92 (46.74%), Query Frame = 1
Query: 115 IIAQVTNFGSDVAANQFDMQMGGGGFGVWNACADQTYHVVSTEEYTNSDDWPCEQETIEDISVSPLYSYGEESWGNRCGGQKYVEDCSNLPE 390
I+ QVTN G+DV +NQFD+Q+ GGG G+++AC TN P G WG + GG +EDC + PE
Sbjct: 375 IVVQVTNTGADVGSNQFDLQIPGGGVGIFDAC-------------TNMYGLPA----------------GSNGWGKKYGGVSSIEDCDSFPE 437
BLAST of mRNA_H-elongata_contig12911.2139.1 vs. uniprot
Match: A0A1Y1X422_9FUNG (Cellulase n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1X422_9FUNG) HSP 1 Score: 55.8 bits (133), Expect = 4.090e-6 Identity = 32/92 (34.78%), Postives = 44/92 (47.83%), Query Frame = 1
Query: 115 IIAQVTNFGSDVAANQFDMQMGGGGFGVWNACADQTYHVVSTEEYTNSDDWPCEQETIEDISVSPLYSYGEESWGNRCGGQKYVEDCSNLPE 390
++ QVTN GSDV +NQFD+Q+ GGG G+++AC TN P G WG++ GG + +EDC PE
Sbjct: 372 MVVQVTNTGSDVGSNQFDIQIPGGGVGIFDAC-------------TNMYGLPA----------------GSNGWGDKYGGIRSIEDCDTFPE 434 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12911.2139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12911.2139.1 >prot_H-elongata_contig12911.2139.1 ID=prot_H-elongata_contig12911.2139.1|Name=mRNA_H-elongata_contig12911.2139.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp YYETTGESVIFGLGSYGSEEDGKLGKCYRFKIDTGANDIIAQVTNFGSDVback to top mRNA from alignment at H-elongata_contig12911:3119..4824- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12911.2139.1 ID=mRNA_H-elongata_contig12911.2139.1|Name=mRNA_H-elongata_contig12911.2139.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1706bp|location=Sequence derived from alignment at H-elongata_contig12911:3119..4824- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12911:3119..4824- >mRNA_H-elongata_contig12911.2139.1 ID=mRNA_H-elongata_contig12911.2139.1|Name=mRNA_H-elongata_contig12911.2139.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig12911:3119..4824- (Himanthalia elongata Himel1 dioecious)back to top |