mRNA_H-elongata_contig1291.2137.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1291.2137.1
Unique NamemRNA_H-elongata_contig1291.2137.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1291.2137.1 vs. uniprot
Match: A0A6H5JCB9_9PHAE (ENTH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JCB9_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 4.400e-33
Identity = 69/86 (80.23%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    1 PDVAGRQKRAAGLVATTVRDRLNSARQRASRAYREAKSLMSSEMEGVVLKATRPDDLPVKPKHLEALMRPTAEMPKEFNVYLPVVR 258
            P  A +  RA  +  +++RDRLN ARQRAS AYREAKSLMSSEMEGVVLKATRPDDLPVKPKHLEALMRPT EMPKEFNVYLPVVR
Sbjct:  222 PPKASKMGRAKAMSMSSMRDRLNRARQRASSAYREAKSLMSSEMEGVVLKATRPDDLPVKPKHLEALMRPTVEMPKEFNVYLPVVR 307          
BLAST of mRNA_H-elongata_contig1291.2137.1 vs. uniprot
Match: A0A7S3XNF0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNF0_HETAK)

HSP 1 Score: 66.6 bits (161), Expect = 1.100e-11
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   61 RLNSARQRASRAYREAKSLMSSEMEGVVLKATRPDDLPVKPKHLEALMRPTAEMPKEFNVYLPVVR 258
            RL +   +A  A RE K L+SSE+E V+LKATRP DLPVK KHL+AL+   +  P+EF+VY PV++
Sbjct:    2 RLRALADQARAAARELKGLVSSELEAVLLKATRPTDLPVKDKHLDALLFCCSSTPQEFDVYTPVLK 67          
BLAST of mRNA_H-elongata_contig1291.2137.1 vs. uniprot
Match: A0A7S2LGQ7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LGQ7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.060e-9
Identity = 30/74 (40.54%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   37 LVATTVRDRLNSARQRASRAYREAKSLMSSEMEGVVLKATRPDDLPVKPKHLEALMRPTAEMPKEFNVYLPVVR 258
            +V  +    + +A++R  +  RE K ++SSE+E V+LK+TRPDD PVK KH+E L+  T ++P   ++Y P++R
Sbjct:  221 VVRDSTASAMAAAKERTGKYVREVKGMLSSELEQVLLKSTRPDDTPVKAKHMERLIGITYQLPGHLDLYDPILR 294          
BLAST of mRNA_H-elongata_contig1291.2137.1 vs. uniprot
Match: A0A7S1UKU7_9STRA (Hypothetical protein n=3 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UKU7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.550e-8
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   46 TTVRD----RLNSARQRASRA----YREAKSLMSSEMEGVVLKATRPDDLPVKPKHLEALMRPTAEMPKEFNVYLPVVR 258
            +TVRD     L +AR+ +S+     YRE K L SSE+E V+LKATRPDD PVK KH+E L+  T ++   +++Y  V+R
Sbjct:  195 STVRDVAVGSLKAARETSSKLTHNIYREVKGLTSSELEQVMLKATRPDDTPVKGKHVERLVGVTYQVSARYDLYTGVLR 273          
BLAST of mRNA_H-elongata_contig1291.2137.1 vs. uniprot
Match: A0A7S4S5P7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S5P7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.000e-8
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 PDVAGRQKRAAGLVATTVRDRLNSARQRASRAYREAKSLMSSEMEGVVLKATRPDDLPVKPKHLEALMRPTAEMPKEFNVYLPVVR 258
            PDVA  +  A   + T V+D+       +S  YRE K L SSE+E V+LKATRPDD PVK KH+E L+  T ++   +++Y  V+R
Sbjct:  250 PDVATVRDAATSSI-TAVKDKSTKI---SSGIYREIKGLTSSELEQVMLKATRPDDQPVKGKHVERLVGVTYQISGRYDIYDAVLR 331          
BLAST of mRNA_H-elongata_contig1291.2137.1 vs. uniprot
Match: A0A7S4VB79_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VB79_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.250e-8
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 PDVAGRQKRAAGLVATTVRDRLNSARQRASRAYREAKSLMSSEMEGVVLKATRPDDLPVKPKHLEALMRPTAEMPKEFNVYLPVVR 258
            PDVA  +  A   + T V+D+       +S  YRE K L SSE+E V+LKATRPDD PVK KH+E L+  T ++   +++Y  V+R
Sbjct:  250 PDVATVRDAATSSI-TAVKDKSTKI---SSGIYREIKGLTSSELEQVMLKATRPDDQPVKGKHVERLVGVTYQISGRYDIYDAVLR 331          
BLAST of mRNA_H-elongata_contig1291.2137.1 vs. uniprot
Match: A0A1Z5K193_FISSO (ENTH domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K193_FISSO)

HSP 1 Score: 57.8 bits (138), Expect = 8.480e-8
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   97 YREAKSLMSSEMEGVVLKATRPDDLPVKPKHLEALMRPTAEMPKEFNVYLPVVR 258
            YRE K L SSE+E V+LKAT+PDD PVK KH+E L+  T ++  +F++Y  V+R
Sbjct:  218 YREVKGLTSSELEQVMLKATKPDDTPVKGKHVERLVGVTYQIGPKFDIYDAVLR 271          
BLAST of mRNA_H-elongata_contig1291.2137.1 vs. uniprot
Match: B7G2T5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2T5_PHATC)

HSP 1 Score: 57.8 bits (138), Expect = 8.500e-8
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   97 YREAKSLMSSEMEGVVLKATRPDDLPVKPKHLEALMRPTAEMPKEFNVYLPVVR 258
            YRE K L SSE+E V+LKATRPDD PVK KH+E L+  T ++   +++Y  V+R
Sbjct:  246 YREVKGLTSSELEQVMLKATRPDDTPVKGKHVERLVGVTYQISPRYDIYDAVLR 299          
BLAST of mRNA_H-elongata_contig1291.2137.1 vs. uniprot
Match: B8BYK3_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYK3_THAPS)

HSP 1 Score: 57.0 bits (136), Expect = 1.580e-7
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   88 SRAYREAKSLMSSEMEGVVLKATRPDDLPVKPKHLEALMRPTAEMPKEFNVYLPVVR 258
            S  YRE K L SSE+E V+LKATRPD+ PVK KH+E L+  T ++  ++++Y  V+R
Sbjct:  241 SNIYREVKGLTSSELEQVMLKATRPDETPVKTKHVERLVGVTYQISGKYDIYDAVLR 297          
BLAST of mRNA_H-elongata_contig1291.2137.1 vs. uniprot
Match: A0A448ZTH1_9STRA (ENTH domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZTH1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.580e-7
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   97 YREAKSLMSSEMEGVVLKATRPDDLPVKPKHLEALMRPTAEMPKEFNVYLPVVR 258
            YRE K L SSE+E V+LKATRPDD PVK KH E L+  T ++   +++Y  V+R
Sbjct:  220 YREVKGLTSSELEQVMLKATRPDDTPVKGKHAERLVGVTYQISARYDIYDAVLR 273          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1291.2137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JCB9_9PHAE4.400e-3380.23ENTH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S3XNF0_HETAK1.100e-1154.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2LGQ7_9STRA5.060e-940.54Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1UKU7_9STRA4.550e-846.84Hypothetical protein n=3 Tax=Grammatophora oceanic... [more]
A0A7S4S5P7_9STRA6.000e-844.19Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4VB79_9STRA6.250e-844.19Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5K193_FISSO8.480e-853.70ENTH domain-containing protein n=2 Tax=Fistulifera... [more]
B7G2T5_PHATC8.500e-853.70Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
B8BYK3_THAPS1.580e-750.88Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A448ZTH1_9STRA1.580e-753.70ENTH domain-containing protein n=1 Tax=Pseudo-nitz... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1291contigH-elongata_contig1291:195..452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue6.1e-28
Seed eggNOG ortholog2880.D7FQ31
EggNOG OGs2ECB5@1,2SI7J@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929767.5479755-CDS-H-elongata_contig1291:194..4521622929767.5479755-CDS-H-elongata_contig1291:194..452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1291 195..452 -
1691679149.969575-CDS-H-elongata_contig1291:194..4521691679149.969575-CDS-H-elongata_contig1291:194..452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1291 195..452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1291.2137.1prot_H-elongata_contig1291.2137.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1291 195..452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1291.2137.1

>prot_H-elongata_contig1291.2137.1 ID=prot_H-elongata_contig1291.2137.1|Name=mRNA_H-elongata_contig1291.2137.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
PDVAGRQKRAAGLVATTVRDRLNSARQRASRAYREAKSLMSSEMEGVVLK
ATRPDDLPVKPKHLEALMRPTAEMPKEFNVYLPVVR
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mRNA from alignment at H-elongata_contig1291:195..452-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1291.2137.1 ID=mRNA_H-elongata_contig1291.2137.1|Name=mRNA_H-elongata_contig1291.2137.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at H-elongata_contig1291:195..452- (Himanthalia elongata Himel1 dioecious)
CCCGACGTTGCTGGCCGGCAGAAGCGTGCGGCCGGGCTGGTCGCAACCAC CGTAAGGGATCGACTGAACAGCGCCCGTCAGCGGGCGAGCCGCGCATACC GAGAGGCTAAGAGCCTCATGTCGTCCGAGATGGAGGGCGTCGTGCTGAAG GCGACTCGACCGGATGACCTGCCTGTGAAGCCCAAGCACCTGGAGGCGCT CATGCGGCCCACGGCGGAGATGCCGAAGGAATTCAACGTCTACCTTCCTG TGGTGCGT
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Coding sequence (CDS) from alignment at H-elongata_contig1291:195..452-

>mRNA_H-elongata_contig1291.2137.1 ID=mRNA_H-elongata_contig1291.2137.1|Name=mRNA_H-elongata_contig1291.2137.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig1291:195..452- (Himanthalia elongata Himel1 dioecious)
CCCGACGTTGCTGGCCGGCAGAAGCGTGCGGCCGGGCTGGTCGCAACCAC
CGTAAGGGATCGACTGAACAGCGCCCGTCAGCGGGCGAGCCGCGCATACC
GAGAGGCTAAGAGCCTCATGTCGTCCGAGATGGAGGGCGTCGTGCTGAAG
GCGACTCGACCGGATGACCTGCCTGTGAAGCCCAAGCACCTGGAGGCGCT
CATGCGGCCCACGGCGGAGATGCCGAAGGAATTCAACGTCTACCTTCCTG
TGGTGCGTCCCGACGTTGCTGGCCGGCAGAAGCGTGCGGCCGGGCTGGTC
GCAACCACCGTAAGGGATCGACTGAACAGCGCCCGTCAGCGGGCGAGCCG
CGCATACCGAGAGGCTAAGAGCCTCATGTCGTCCGAGATGGAGGGCGTCG
TGCTGAAGGCGACTCGACCGGATGACCTGCCTGTGAAGCCCAAGCACCTG
GAGGCGCTCATGCGGCCCACGGCGGAGATGCCGAAGGAATTCAACGTCTA
CCTTCCTGTGGTGCGT
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